genome.fa.s9.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  172  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51951787--51951845	28	2.1	29	83	3	75	57	15	0	27	1.38
51953048--51953114	31	2.2	29	80	15	73	38	8	0	52	1.33
51954289--51954345	29	1.9	30	89	10	91	29	10	12	47	1.74
51961057--51961612	278	2.0	280	91	2	902	27	7	19	44	1.77
51972827--51973055	80	3.0	77	75	10	195	44	9	12	34	1.74
51981509--51981562	26	2.1	26	85	0	72	38	3	1	55	1.28
51991601--51991665	32	2.0	32	100	0	130	27	15	18	38	1.91
51994729--51994768	21	1.9	21	90	10	64	55	0	0	45	0.99
51995613--51995795	92	2.0	90	81	5	215	30	26	20	22	1.98
51996753--51996794	11	3.7	11	81	6	57	64	0	0	35	0.94
52003930--52003969	16	2.5	16	91	0	71	35	5	32	27	1.79
52004055--52004094	16	2.5	16	79	0	53	35	5	30	30	1.79
52003887--52004135	125	2.0	125	98	0	480	24	19	21	35	1.96
52004264--52004348	32	3.0	26	69	24	73	50	2	0	47	1.14
52004264--52004424	58	2.7	59	84	10	195	50	1	1	47	1.17
52010747--52010789	6	7.2	6	79	10	52	2	16	0	81	0.79
52011670--52011729	27	2.2	29	82	8	72	55	6	0	38	1.27
52020657--52020723	34	1.9	35	96	3	127	49	8	10	31	1.68
52028287--52028481	30	6.6	29	76	6	169	42	3	22	32	1.69
52028275--52028484	60	3.5	58	81	5	224	41	3	22	31	1.72
52028276--52028494	30	7.3	29	72	10	138	42	4	22	31	1.74
52030457--52030530	33	2.2	33	90	0	112	29	8	17	44	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52031371--52031451	23	3.6	22	83	3	90	37	28	22	12	1.90
52031369--52031492	23	5.4	23	76	8	76	40	23	23	12	1.89
52033315--52033344	7	4.3	7	91	0	51	46	0	16	36	1.47
52033375--52033401	11	2.5	11	100	0	54	18	0	18	62	1.32
52035377--52035454	39	1.9	39	82	7	93	35	2	5	56	1.35
52039530--52039597	30	2.2	31	84	2	84	39	5	4	50	1.47
52042101--52042142	15	2.5	18	81	18	63	61	0	2	35	1.09
52042102--52042148	16	2.9	15	87	9	58	57	0	2	40	1.11
52042284--52042317	14	2.4	14	90	0	50	26	0	2	70	1.01
52043417--52043465	20	2.4	22	90	10	77	40	0	0	59	0.98
52043641--52043680	4	10.0	4	100	0	80	25	0	0	75	0.81
52044216--52044274	31	1.9	31	86	10	86	54	23	0	22	1.45
52045121--52045178	29	2.0	29	83	6	73	46	8	15	29	1.75
52045721--52045817	32	2.8	36	70	16	98	42	1	8	48	1.40
52045725--52045817	31	2.8	32	79	11	116	40	1	8	49	1.40
52046497--52046537	14	2.8	15	81	7	57	56	9	0	34	1.32
52046690--52046753	28	2.2	30	83	10	80	53	0	0	46	1.00
52046690--52046758	27	2.4	29	79	11	72	53	0	0	46	1.00
52048330--52048372	2	21.5	2	95	0	77	48	2	0	48	1.14
52049718--52049767	24	2.0	25	85	11	68	28	10	10	52	1.67
52049924--52050009	18	4.8	18	73	2	75	22	12	33	31	1.91
52054503--52054537	17	2.0	18	88	5	54	22	5	0	71	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52055322--52055363	22	2.0	21	85	4	57	59	0	0	40	0.97
52055326--52055355	16	1.9	16	93	6	53	60	0	0	40	0.97
52055842--52055879	15	2.4	16	86	8	60	34	13	0	52	1.40
52057241--52057669	114	3.9	113	83	5	468	18	28	25	27	1.98
52057480--52057663	102	1.8	102	87	2	280	19	30	23	26	1.98
52060610--52060659	24	2.0	25	85	11	68	28	10	10	52	1.67
52060816--52060901	18	4.8	18	73	2	75	22	12	33	31	1.91
52069883--52069942	24	2.5	24	81	2	77	11	13	43	31	1.80
52069909--52069949	19	2.1	20	86	4	57	7	12	43	36	1.70
52077080--52077117	19	2.0	19	85	10	51	76	0	0	23	0.79
52077743--52077784	4	10.5	4	80	10	50	71	0	2	26	0.98
52080345--52080380	17	2.1	17	90	10	56	66	2	0	30	1.06
52080465--52080498	13	2.6	13	85	0	50	61	2	2	32	1.26
52080711--52080735	2	12.5	2	100	0	50	52	0	0	48	1.00
52084781--52084822	15	2.7	16	82	14	52	38	0	0	61	0.96
52084771--52084827	16	3.6	17	77	13	59	38	0	1	59	1.08
52085189--52085219	15	2.1	15	100	0	62	32	0	29	38	1.57
52085907--52085960	25	2.2	25	93	6	92	44	3	3	48	1.38
52086206--52086267	31	2.0	31	87	0	88	37	8	8	46	1.63
52087748--52087778	8	3.8	8	95	4	53	48	0	0	51	1.00
52088282--52088324	18	2.3	18	84	4	59	51	9	0	39	1.34
52099305--52099357	23	2.3	23	78	9	56	66	3	1	28	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52099548--52099588	14	2.9	14	89	10	57	78	7	0	14	0.96
52102012--52102081	17	4.1	16	75	14	68	27	32	18	21	1.97
52103428--52103469	12	3.5	12	100	0	84	26	28	19	26	1.98
52108107--52108382	153	1.8	153	83	1	374	36	17	21	24	1.94
52121027--52121223	99	2.0	99	82	2	243	50	13	13	23	1.76
52121393--52121428	14	2.6	14	90	0	54	41	5	22	30	1.76
52126250--52126296	17	2.7	17	80	9	51	23	34	19	23	1.97
52140264--52140549	153	1.9	153	86	1	412	37	18	21	22	1.95
52151265--52151340	38	2.0	38	100	0	152	28	10	36	23	1.88
52158367--52158436	24	2.9	24	78	2	77	50	4	5	40	1.46
52159745--52159840	41	2.3	41	92	0	156	36	29	5	29	1.79
52169444--52169478	15	2.3	15	90	0	52	48	0	0	51	1.00
52172041--52172072	2	16.0	2	100	0	64	50	0	0	50	1.00
52172386--52172572	96	1.9	97	83	5	245	32	23	11	33	1.90
52176674--52176714	13	3.3	13	80	10	50	51	12	0	36	1.40
52180352--52180384	15	2.3	15	89	5	50	18	6	0	75	1.00
52204185--52204295	20	5.4	21	81	10	115	18	16	7	57	1.61
52204185--52204272	20	4.4	20	88	2	124	19	15	6	57	1.60
52204186--52204273	40	2.2	40	95	0	158	18	15	6	59	1.58
52214670--52214714	19	2.4	19	81	7	56	37	0	4	57	1.19
52215521--52215571	16	3.3	15	78	10	50	15	7	1	74	1.13
52215514--52215573	21	2.8	22	85	7	61	15	8	1	75	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52215523--52215553	16	1.9	16	93	0	53	16	6	0	77	0.97
52217363--52217437	36	2.1	36	100	0	150	34	8	29	28	1.85
52223767--52223867	44	2.3	44	96	0	193	33	8	15	41	1.79
52242733--52242807	24	3.1	24	86	0	96	54	8	9	28	1.60
52244740--52244806	24	2.8	24	90	0	98	53	5	8	31	1.56
52250462--52250496	18	2.0	17	88	5	52	31	5	0	62	1.18
52251202--52251232	14	2.1	15	94	5	55	25	25	0	48	1.52
52256158--52256196	18	2.2	17	90	4	60	17	38	0	43	1.50
52262076--52262208	43	3.1	43	87	2	187	30	27	16	26	1.97
52268541--52268578	16	2.4	16	86	0	58	15	28	0	55	1.41
52269164--52269194	14	2.1	15	94	5	55	25	25	0	48	1.52
52273659--52273711	17	3.4	17	65	20	51	32	18	1	47	1.60
52273647--52273721	30	2.5	30	95	2	134	34	13	2	49	1.56
52274477--52274523	24	2.0	24	83	4	60	40	10	10	38	1.75
52277195--52277236	9	4.6	9	80	16	50	54	0	0	45	0.99
52281881--52281924	21	2.0	23	91	8	74	31	18	13	36	1.90
52285438--52285464	3	9.0	3	100	0	54	33	0	0	66	0.92
52294060--52294115	20	2.8	20	88	0	76	10	19	26	42	1.84
52298119--52298206	31	2.8	31	84	6	99	30	13	6	48	1.68
52298490--52298596	30	3.5	31	74	11	114	55	7	8	28	1.57
52298802--52298906	18	5.7	18	70	11	70	32	3	2	60	1.29
52298802--52298906	56	1.9	55	82	3	131	32	3	2	60	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52298926--52298976	24	2.2	22	82	10	57	31	1	0	66	1.03
52299224--52299331	54	2.0	54	100	0	216	27	22	9	40	1.84
52311727--52311755	14	2.0	15	93	6	51	27	24	0	48	1.51
52316992--52317036	21	2.1	21	87	0	63	60	0	11	28	1.31
52327836--52327916	19	4.2	19	87	9	92	23	0	24	51	1.48
52327856--52327973	19	5.9	19	79	13	112	22	0	25	51	1.48
52327835--52327995	63	2.5	65	80	9	188	22	0	26	50	1.49
52327875--52327999	44	2.8	43	85	8	171	22	0	25	52	1.48
52327895--52328019	25	5.2	25	75	20	106	21	0	25	52	1.47
52327939--52328064	26	4.9	26	85	5	141	20	0	24	54	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182