genome.fa.s9.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  38  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14436461--14436609	56	2.7	56	81	4	174	13	39	16	30	1.87
14445902--14445958	29	2.0	29	85	0	78	36	7	5	50	1.52
14446148--14446222	30	2.5	31	88	2	116	56	12	5	26	1.57
14448109--14448155	17	2.8	17	96	0	85	53	6	0	40	1.27
14448277--14448316	20	2.0	20	90	0	62	52	0	27	20	1.46
14448747--14448781	17	2.1	17	89	10	54	34	17	14	34	1.90
14450639--14450699	24	2.5	26	84	7	74	26	0	8	65	1.20
14450640--14450699	25	2.5	23	82	12	68	26	0	8	65	1.21
14450791--14450867	29	2.7	29	84	9	97	14	1	11	72	1.18
14450831--14450864	17	2.1	17	94	5	61	14	0	11	73	1.10
14450823--14450871	17	2.8	17	76	14	55	12	0	10	77	0.99
14450822--14450905	29	2.7	29	75	17	71	15	0	16	67	1.23
14452060--14452161	51	2.0	51	84	0	132	44	8	2	44	1.50
14455203--14455243	22	2.0	20	85	9	55	51	2	0	46	1.14
14457178--14457232	25	2.2	24	78	15	58	50	3	3	41	1.37
14463102--14463133	3	10.7	3	100	0	64	65	0	0	34	0.93
14463654--14463699	14	3.2	14	80	17	58	71	2	2	23	1.08
14463837--14463873	18	2.0	19	89	5	58	29	0	2	67	1.04
14465291--14465331	3	13.7	3	100	0	82	34	0	0	65	0.93
14465743--14465782	21	1.9	21	85	10	55	60	5	0	35	1.19
14488680--14488744	29	2.3	30	76	10	73	41	10	0	47	1.38
14492464--14492521	19	3.0	18	83	16	64	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14492464--14492570	28	3.8	28	75	13	94	56	0	0	43	0.99
14492476--14492566	18	4.9	18	72	9	76	57	0	0	42	0.99
14492464--14492567	9	11.3	9	68	18	63	55	0	0	44	0.99
14493758--14493827	30	2.3	30	83	13	83	38	0	0	61	0.96
14502804--14502862	31	2.0	31	83	6	77	54	0	0	45	0.99
14504809--14504864	28	2.0	28	100	0	112	21	46	10	21	1.81
14509980--14510005	13	2.0	13	100	0	52	92	7	0	0	0.39
14514919--14514961	20	2.2	19	83	4	50	30	6	2	60	1.35
14515469--14515553	43	2.0	44	82	15	106	37	7	0	55	1.27
14531721--14531776	23	2.4	24	76	8	62	39	1	3	55	1.28
14537229--14537313	39	2.2	39	85	4	109	10	32	4	51	1.57
14544810--14544835	5	5.2	5	100	0	52	0	38	19	42	1.51
14545675--14545714	18	2.3	19	79	16	50	42	5	5	47	1.47
14552473--14552584	50	2.3	50	79	8	117	29	8	17	44	1.77
14557162--14557189	14	2.0	14	100	0	56	64	14	7	14	1.48
14568341--14568427	30	3.2	26	74	15	93	25	11	6	56	1.59
14568318--14568479	57	2.8	56	78	11	164	26	16	11	46	1.80
14568678--14568754	29	2.7	29	81	0	100	55	9	3	31	1.49
14568724--14568789	34	1.9	34	84	9	89	65	6	1	27	1.25
14568729--14568805	13	5.8	13	70	8	57	62	6	1	29	1.28
14572015--14572046	3	10.7	3	100	0	64	65	0	0	34	0.93
14583418--14583455	15	2.4	17	86	8	53	47	7	7	36	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14589476--14589517	18	2.3	18	84	11	59	33	2	2	61	1.21
14589559--14589596	18	2.1	19	85	5	51	42	0	7	50	1.31
14590149--14590358	107	2.0	107	89	1	323	36	17	6	40	1.76
14602009--14602070	22	3.0	20	81	6	63	67	11	8	12	1.41
14602438--14602477	15	2.5	17	73	19	50	55	0	10	35	1.34
14603250--14603286	18	2.1	18	89	0	56	24	8	13	54	1.66
14604948--14604986	17	2.2	19	86	9	55	51	5	0	43	1.24
14608417--14608538	34	3.4	34	67	26	97	36	4	4	54	1.38
14608389--14608583	77	2.5	77	97	0	363	42	3	3	50	1.35
14609960--14610004	22	2.0	22	86	0	63	26	20	33	20	1.97
14613898--14613938	21	2.0	21	85	0	55	29	24	12	34	1.91
14627460--14627493	17	2.1	15	89	10	50	52	5	0	41	1.25
14628408--14628450	18	2.4	18	100	0	86	79	11	0	9	0.95
14635594--14635624	5	6.4	5	92	7	55	80	0	0	19	0.71
14638034--14638092	29	2.0	30	83	3	75	52	15	1	30	1.52
14640835--14640871	15	2.6	15	87	8	51	64	0	0	35	0.94
14648982--14649011	10	3.0	10	95	0	51	33	10	20	36	1.86
14649922--14649996	31	2.5	31	87	10	102	20	12	21	46	1.82
14650654--14650688	18	2.0	18	88	5	54	37	2	0	60	1.12
14653178--14653261	29	2.9	30	78	5	91	44	2	4	48	1.36
14653482--14653529	15	3.1	14	76	23	51	66	0	2	31	1.03
14666362--14666474	56	2.0	56	100	0	226	36	1	15	46	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14666651--14666724	17	4.4	17	79	3	60	43	1	4	51	1.29
14667451--14667530	16	5.5	15	71	16	62	56	2	2	38	1.26
14667463--14667531	35	2.0	35	82	0	84	57	2	2	36	1.28
14667451--14667533	3	26.7	3	75	7	58	56	2	2	38	1.25
14668512--14668548	16	2.2	17	90	9	58	43	0	0	56	0.99
14668666--14668721	29	1.9	29	88	0	85	50	14	12	23	1.77
14670583--14670656	35	2.2	35	83	9	93	54	1	8	36	1.39
14675469--14675499	2	15.5	2	100	0	62	48	0	0	51	1.00
14676136--14676215	20	3.9	20	76	13	74	58	3	0	37	1.16
14684597--14684637	11	3.7	11	80	0	55	26	9	2	60	1.40
14684597--14684638	22	1.9	22	90	0	66	26	9	4	59	1.48
14687955--14687995	21	2.0	20	86	13	57	41	2	0	56	1.13
14697550--14697607	30	1.9	31	85	3	82	63	3	5	27	1.31
14714170--14714225	26	2.2	24	79	14	60	48	10	7	33	1.65
14718436--14718539	37	2.7	38	76	5	93	31	26	19	22	1.97
14718642--14718680	13	3.1	13	85	7	62	20	25	0	53	1.45
14718642--14718675	6	5.5	6	86	6	50	20	29	0	50	1.49
14724742--14724795	3	18.0	3	88	0	81	29	1	3	64	1.21
14727261--14727322	29	2.1	29	87	0	88	41	19	16	22	1.89
14727788--14727934	55	3.2	43	75	18	111	30	36	15	17	1.91
14727809--14727935	55	2.6	46	74	20	125	30	37	14	16	1.89
14727826--14727972	55	2.7	55	88	0	204	29	34	15	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14731992--14732037	24	1.9	24	90	0	74	65	0	2	32	1.05
14733853--14733887	18	1.9	18	88	0	52	14	5	11	68	1.37
14734560--14734615	22	2.5	22	76	0	67	60	5	10	23	1.50
14734849--14734891	22	2.0	21	81	4	50	65	9	4	20	1.40
14747953--14748009	28	2.0	28	89	0	87	17	8	29	43	1.79
14748053--14748126	30	2.5	30	84	0	85	27	14	28	29	1.95
14749847--14749894	5	9.4	5	93	2	69	0	33	6	60	1.22
14759642--14759723	4	20.5	4	82	5	103	24	2	2	70	1.11
14762850--14762904	24	2.2	25	75	9	60	69	9	3	18	1.30
14765723--14765776	24	2.2	25	83	9	67	12	42	3	40	1.61
14765839--14765872	3	11.3	3	93	0	59	29	35	2	32	1.73
14767557--14767605	6	8.2	6	88	0	53	16	46	0	36	1.47
14767955--14767989	18	1.9	18	88	0	52	8	48	0	42	1.33
14772887--14772921	18	2.0	18	88	5	54	51	0	0	48	1.00
14773392--14773444	26	2.0	26	82	7	63	58	13	0	28	1.35
14779672--14779724	21	2.5	21	77	17	65	50	11	15	22	1.75
14780915--14781110	59	3.3	59	75	8	193	38	5	27	29	1.78
14781087--14781467	30	12.7	30	81	8	365	36	3	21	38	1.72
14781102--14781467	60	6.1	60	86	3	488	36	3	21	38	1.71
14781112--14781472	90	4.0	90	84	3	458	36	3	21	37	1.72
14783239--14783277	20	2.0	20	85	10	53	15	12	48	23	1.79
14783427--14783511	11	7.5	11	75	12	73	54	1	2	42	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14783427--14783501	6	13.0	6	71	23	63	54	0	2	42	1.14
14783429--14783501	17	4.6	16	80	13	89	56	0	2	41	1.14
14783899--14784791	68	13.1	68	89	4	1372	28	19	17	34	1.95
14783899--14784791	136	6.6	136	95	1	1567	28	19	17	34	1.95
14792860--14792888	4	7.2	4	100	0	58	48	0	27	24	1.51
14796514--14796715	59	3.4	58	73	7	183	37	4	28	29	1.77
14796688--14797027	30	11.4	30	81	6	388	36	2	21	38	1.69
14796688--14797040	90	3.9	90	86	4	428	37	2	21	38	1.68
14798805--14798843	20	2.0	20	85	10	53	15	12	48	23	1.79
14798993--14799068	6	13.0	6	74	20	72	53	0	2	43	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182