genome.fa.s9.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  11  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4275762--4275829	28	2.5	28	78	2	66	44	2	1	51	1.25
4293465--4293522	3	19.3	3	89	0	80	0	27	32	39	1.57
4301932--4301986	18	3.0	19	89	7	87	25	12	0	61	1.31
4302529--4302587	18	3.3	17	84	11	73	38	1	3	55	1.26
4303932--4303965	14	2.4	14	85	0	50	23	0	5	70	1.09
4304628--4304672	22	2.0	22	83	8	56	13	11	11	64	1.50
4304637--4304689	23	2.3	22	83	6	61	13	11	13	62	1.55
4305760--4305992	72	3.2	72	98	0	439	40	10	25	23	1.86
4313811--4313835	2	12.5	2	100	0	50	52	0	0	48	1.00
4316150--4316178	2	14.5	2	100	0	58	51	0	0	48	1.00
4328720--4328753	16	2.0	17	88	11	52	11	23	17	47	1.81
4333034--4333067	18	1.9	18	94	5	61	41	0	8	50	1.34
4333114--4333148	18	2.0	18	88	5	54	48	11	8	31	1.69
4333172--4333216	18	2.6	17	79	6	54	33	13	6	46	1.69
4337627--4337669	21	2.0	22	90	4	70	11	0	11	76	1.02
4337751--4337812	30	2.1	30	93	0	106	22	4	14	58	1.56
4339444--4339486	18	2.4	19	80	11	54	48	0	2	48	1.14
4339617--4339671	28	2.0	28	89	3	85	50	10	12	25	1.73
4344120--4344164	22	2.0	22	95	0	81	28	8	28	33	1.87
4352019--4352097	35	2.3	35	93	0	131	21	16	11	50	1.76
4353283--4353307	2	12.5	2	100	0	50	48	0	0	52	1.00
4357932--4357971	16	2.6	14	88	11	53	55	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4362390--4362688	147	2.0	147	100	0	598	34	8	20	37	1.83
4365259--4365741	241	2.0	241	97	0	912	37	18	17	26	1.93
4371269--4371309	14	2.7	15	82	17	50	36	0	4	58	1.20
4374790--4374832	15	2.8	16	82	13	54	34	0	0	65	0.93
4374789--4374834	24	1.9	24	86	0	65	36	0	0	63	0.95
4374822--4374872	23	2.2	23	85	3	66	62	0	0	37	0.95
4381754--4381782	12	2.5	12	94	5	51	68	0	0	31	0.89
4385539--4385645	51	2.1	50	81	8	119	37	13	5	43	1.67
4385893--4385932	19	2.1	19	100	0	80	50	5	10	35	1.58
4397320--4397361	21	2.0	21	95	4	77	45	4	16	33	1.69
4414358--4414396	21	1.9	19	85	10	51	33	0	5	61	1.18
4416429--4416466	18	2.1	18	85	14	51	36	0	7	55	1.29
4416460--4416486	9	3.0	9	100	0	54	22	0	0	77	0.76
4418700--4418755	23	2.5	22	77	8	67	58	10	0	30	1.32
4419272--4419313	17	2.4	17	92	4	66	21	26	2	50	1.61
4419249--4419299	24	2.1	24	85	7	68	19	27	1	50	1.58
4426441--4426521	29	2.7	30	84	5	101	48	13	4	33	1.64
4427990--4428030	14	3.1	14	86	6	50	41	4	2	51	1.36
4440965--4441007	15	2.7	15	82	7	50	25	2	0	72	0.97
4441056--4441100	2	22.5	2	100	0	90	48	0	0	51	1.00
4446097--4446132	16	2.2	16	90	0	54	30	16	0	52	1.44
4446787--4446846	20	3.1	19	77	15	68	50	3	0	46	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4450403--4450476	29	2.5	30	84	10	98	62	1	0	36	1.04
4450405--4450448	23	2.0	22	95	4	79	61	0	0	38	0.96
4450406--4450453	22	2.2	23	88	7	73	62	0	0	37	0.95
4450403--4450478	14	5.1	15	73	15	68	63	1	0	35	1.03
4452971--4453011	16	2.6	16	78	21	50	31	2	0	65	1.05
4455719--4455758	19	2.1	19	100	0	80	27	35	5	32	1.79
4462265--4462310	15	2.9	16	83	6	58	36	13	10	39	1.79
4462676--4462714	6	6.5	6	90	0	51	0	38	10	51	1.36
4465189--4465246	24	2.4	25	73	5	64	48	1	3	46	1.29
4465518--4465584	28	2.3	28	80	10	73	37	0	5	56	1.24
4472990--4473039	25	2.0	26	92	4	84	54	2	2	42	1.23
4472989--4473051	26	2.4	26	81	7	83	52	3	3	41	1.33
4473617--4473666	23	2.2	24	85	7	68	58	4	2	36	1.29
4481452--4481517	20	3.3	20	81	8	89	31	4	18	45	1.69
4481447--4481526	40	2.0	42	92	5	137	33	5	17	43	1.71
4491582--4491647	29	2.2	29	78	7	71	43	7	4	43	1.53
4493782--4493834	21	2.6	21	76	11	56	64	7	0	28	1.21
4494760--4494786	9	3.0	9	100	0	54	33	0	66	0	0.92
4504726--4504761	18	2.1	18	89	5	56	44	0	13	41	1.44
4510147--4510189	21	2.1	20	83	12	52	44	2	0	53	1.13
4510165--4510230	30	2.2	29	84	7	80	56	1	0	42	1.08
4516706--4516759	27	2.0	27	82	10	65	66	1	0	31	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4517597--4517635	14	2.7	15	84	8	53	64	2	0	33	1.08
4521906--4521954	15	3.1	16	85	5	64	51	0	6	42	1.27
4546555--4546579	13	1.9	13	100	0	50	48	4	0	48	1.20
4556155--4556491	93	3.6	93	91	2	505	16	32	18	33	1.93
4567925--4567966	22	1.9	22	85	0	57	42	4	0	52	1.22
4570620--4570782	81	2.0	81	80	2	184	39	12	11	36	1.79
4575170--4575335	23	7.4	23	72	15	125	43	22	21	11	1.84
4576056--4576082	13	2.1	13	100	0	54	44	25	7	22	1.79
4576857--4576892	18	2.0	18	88	0	54	41	8	0	50	1.33
4580029--4580108	23	3.4	23	81	10	99	8	30	21	40	1.83
4585133--4585178	25	2.0	23	83	12	58	41	17	26	15	1.88
4585171--4585248	23	3.3	23	77	10	86	37	20	29	12	1.90
4587819--4587852	18	1.9	18	88	5	52	44	5	0	50	1.26
4589595--4589771	89	2.0	88	89	1	273	38	14	19	26	1.91
4595027--4595059	16	2.0	17	88	5	50	39	0	3	57	1.14
4595043--4595088	9	4.7	10	74	15	51	41	2	0	56	1.11
4595041--4595079	20	1.9	21	89	5	62	46	2	0	51	1.14
4600967--4600991	13	1.9	13	100	0	50	16	48	8	28	1.74
4605063--4605099	17	2.2	17	95	0	65	40	0	8	51	1.32
4605442--4605523	29	2.7	29	81	5	92	48	13	7	30	1.69
4620902--4620951	24	2.2	22	89	7	73	24	8	4	64	1.38
4637214--4637308	31	3.0	31	77	16	97	36	1	1	61	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4637210--4637304	32	2.9	32	80	16	92	36	2	1	60	1.16
4638442--4638481	20	2.0	21	85	5	55	2	12	7	77	1.07
4641476--4641698	83	2.7	83	93	2	367	35	14	18	31	1.91
4646148--4646210	19	3.3	20	76	12	62	38	0	3	58	1.14
4646396--4646581	92	2.0	92	98	0	363	46	11	13	27	1.79
4660688--4660729	22	1.9	22	85	9	59	59	9	0	30	1.29
4662857--4662891	4	8.8	4	93	0	61	48	22	2	25	1.64
4669598--4669660	31	2.0	31	82	11	76	30	9	6	53	1.58
4671236--4671376	70	2.0	70	95	0	255	33	21	15	29	1.95
4671641--4671675	17	2.2	16	90	10	54	31	0	8	60	1.27
4672231--4672306	40	1.9	40	91	0	125	48	3	3	43	1.40
4674972--4675133	24	6.5	24	77	7	144	17	30	26	25	1.98
4674972--4675133	51	3.2	51	81	2	177	17	30	26	25	1.98
4683786--4684134	24	14.3	24	89	4	511	17	34	24	23	1.96
4687930--4687955	6	4.3	6	100	0	52	84	15	0	0	0.62
4697139--4697241	30	3.6	29	73	15	90	40	2	2	53	1.31
4704404--4704467	25	2.5	25	73	16	60	39	7	0	53	1.30
4704502--4704534	13	2.4	14	90	5	50	42	6	0	51	1.26
4704840--4704888	25	2.0	25	84	8	64	34	4	8	53	1.50
4705855--4705879	13	1.9	13	100	0	50	48	8	20	24	1.76
4709418--4709445	2	14.0	2	100	0	56	50	0	0	50	1.00
4719408--4719450	21	2.0	21	90	0	68	23	4	11	60	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4719939--4719970	2	16.0	2	100	0	64	50	0	0	50	1.00
4720972--4721057	44	2.0	44	83	4	111	26	5	13	53	1.63
4724333--4724360	11	2.5	11	100	0	56	39	0	0	60	0.97
4724526--4724577	21	2.5	20	79	14	61	48	17	0	34	1.48
4724682--4724755	29	2.5	30	79	16	75	62	1	1	35	1.12
4725728--4725786	30	2.0	30	83	6	75	35	6	10	47	1.64
4726440--4726464	12	2.1	12	100	0	50	8	0	16	76	1.02
4744234--4744276	18	2.4	18	88	7	61	53	0	2	44	1.13
4750645--4750683	18	2.0	20	85	9	55	46	0	0	53	1.00
4751155--4751193	15	2.4	16	87	8	53	35	0	0	64	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182