genome.fa.s9.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  102  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33268725--33268757	17	1.9	17	88	11	50	27	0	6	66	1.15
33268938--33269036	50	2.0	49	81	9	114	40	14	11	34	1.81
33268952--33269107	50	3.1	50	77	8	154	35	16	12	36	1.85
33270278--33270321	19	2.4	19	88	11	65	68	6	11	13	1.39
33271262--33271323	26	2.4	26	91	5	99	46	8	19	25	1.77
33273205--33273233	14	2.0	15	93	6	51	62	0	34	3	1.12
33280349--33280413	15	4.3	15	67	7	51	23	21	26	29	1.99
33282448--33282546	39	2.5	39	98	0	189	25	5	16	53	1.63
33282592--33282685	32	2.9	32	93	0	152	31	11	17	39	1.85
33283695--33283733	14	2.6	15	84	12	53	58	5	15	20	1.55
33283695--33283733	15	2.6	14	92	8	60	58	5	15	20	1.55
33285890--33285937	18	2.7	17	80	6	51	70	0	20	8	1.12
33289114--33289210	39	2.5	39	91	3	162	26	5	14	53	1.61
33289256--33289350	32	3.0	32	87	0	136	31	14	18	34	1.92
33290512--33290633	48	2.5	48	91	0	190	53	16	7	22	1.68
33293782--33293919	50	2.7	50	78	9	136	36	15	12	35	1.86
33296012--33296150	48	2.9	45	80	14	129	49	12	10	26	1.74
33296074--33296152	28	3.3	24	64	29	60	53	12	8	25	1.67
33296109--33296147	19	2.0	19	85	5	51	51	10	12	25	1.71
33296027--33296158	48	2.8	48	88	0	183	52	12	9	25	1.69
33298168--33300868	216	12.5	216	82	3	3077	27	17	13	40	1.88
33306707--33306760	27	2.0	27	92	0	90	22	18	29	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33320574--33320702	48	2.7	48	91	1	197	52	12	7	27	1.66
33324145--33324179	18	1.9	18	88	0	52	71	2	17	8	1.23
33328955--33328995	21	2.0	21	86	9	59	21	24	29	24	1.99
33331523--33331660	50	2.7	51	80	11	158	36	11	16	35	1.85
33334197--33334286	25	3.5	25	72	19	78	17	8	1	72	1.16
33334197--33334260	29	2.3	29	87	10	91	17	7	1	73	1.14
33334188--33334261	30	2.5	31	78	17	84	14	10	1	72	1.17
33334222--33334293	25	2.8	25	83	8	92	18	9	2	69	1.28
33334253--33334310	19	3.0	20	85	7	75	17	12	3	67	1.36
33338457--33338506	13	3.9	13	76	12	50	80	0	6	14	0.90
33338451--33338499	24	2.0	25	88	4	73	79	2	6	12	0.99
33338463--33338503	19	2.0	20	86	9	57	80	0	7	12	0.90
33338458--33338506	9	5.2	9	82	7	53	79	0	6	14	0.91
33351341--33351420	32	2.5	32	87	0	106	31	7	18	42	1.78
33352406--33353515	216	5.1	216	83	2	1338	29	17	13	39	1.88
33353812--33353922	48	2.3	48	90	1	170	25	9	14	51	1.71
33354271--33354361	39	2.3	39	90	0	146	25	6	14	53	1.64
33354415--33354509	32	3.0	32	96	0	172	30	11	20	37	1.88
33355481--33358102	216	12.1	216	84	2	3149	28	17	13	40	1.88
33358399--33358511	48	2.3	48	89	1	163	23	9	13	53	1.68
33358870--33358960	39	2.3	39	94	0	164	25	6	14	53	1.64
33359014--33359108	32	3.0	32	96	0	172	30	11	20	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33360521--33360677	80	2.0	79	93	1	269	35	22	15	27	1.94
33361129--33365136	216	18.7	215	81	4	4349	28	18	13	39	1.89
33361134--33365136	431	9.3	426	81	5	4089	28	18	13	39	1.89
33361129--33365145	647	6.2	647	88	2	5861	28	18	13	39	1.89
33364991--33365304	172	1.8	172	89	2	497	26	22	13	37	1.91
33363529--33372109	804	10.3	804	68	16	2862	28	18	13	39	1.89
33365442--33366371	216	4.3	215	80	3	1048	29	18	13	38	1.89
33365442--33366371	431	2.2	432	82	3	1127	29	18	13	38	1.89
33366226--33366539	172	1.8	172	89	4	499	26	22	13	37	1.91
33366386--33367605	216	5.7	215	78	7	1263	28	19	13	39	1.89
33366677--33367605	430	2.2	432	83	3	1145	28	18	13	38	1.89
33367460--33367773	172	1.8	172	88	4	490	26	22	13	37	1.91
33367911--33368840	216	4.3	215	80	3	1026	29	18	13	38	1.89
33367911--33368840	431	2.2	432	82	3	1127	29	18	13	38	1.89
33368855--33370093	216	5.7	216	82	4	1435	27	18	13	39	1.89
33368885--33372123	431	7.6	431	71	13	1791	28	18	13	39	1.89
33370110--33372123	216	9.4	215	81	4	2144	27	18	13	39	1.89
33370149--33372130	647	3.1	644	86	3	2663	28	18	13	39	1.89
33375127--33375152	6	4.3	6	100	0	52	84	0	15	0	0.62
33375884--33375942	26	2.3	26	88	5	84	35	16	16	30	1.92
33380173--33380203	4	7.8	4	92	0	53	25	3	22	48	1.66
33383069--33383708	194	3.3	192	85	5	783	29	17	26	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33386617--33386681	15	4.3	15	82	0	67	27	27	21	23	1.99
33386605--33386681	30	2.6	30	82	0	91	27	25	22	24	2.00
33393106--33393237	48	2.8	46	86	9	155	51	13	9	25	1.71
33399642--33399772	48	2.7	48	85	1	181	51	14	9	25	1.72
33406290--33406343	28	1.9	28	85	7	74	70	0	16	12	1.17
33406287--33406330	16	2.6	16	86	13	54	70	0	18	11	1.16
33410215--33410309	20	4.7	20	76	10	95	48	15	7	28	1.72
33419598--33419627	12	2.5	12	94	0	51	40	0	0	60	0.97
33419952--33419983	16	1.9	16	93	6	55	87	0	0	12	0.54
33419952--33419984	9	3.6	9	95	4	57	87	0	0	12	0.53
33420999--33421053	26	2.1	26	100	0	110	32	7	32	27	1.84
33434671--33434711	12	3.0	14	82	13	50	2	31	0	65	1.05
33445122--33445152	15	2.1	15	93	0	53	25	29	25	19	1.99
33452436--33453451	214	4.7	216	81	5	1123	41	14	16	27	1.87
33452436--33453451	430	2.4	431	82	5	1229	41	14	16	27	1.87
33453329--33453561	124	1.9	124	91	1	387	40	16	14	28	1.88
33452470--33454421	984	2.0	980	83	3	2456	40	15	16	27	1.88
33453453--33463198	216	45.4	216	80	5	9748	40	14	17	28	1.88
33453453--33464365	432	25.5	430	80	6	11031	40	14	17	28	1.88
33459578--33459945	198	1.9	198	85	3	517	37	14	18	29	1.91
33462991--33464035	216	5.1	196	80	9	750	37	14	18	28	1.91
33463190--33464364	216	5.5	213	82	6	1275	38	14	17	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33473822--33473861	17	2.3	18	86	4	55	42	17	10	30	1.82
33479237--33479285	26	2.0	25	84	15	66	16	14	10	59	1.61
33479239--33479288	24	2.0	27	84	11	70	18	14	10	58	1.63
33483254--33483311	25	2.3	24	77	8	62	36	1	3	58	1.25
33493873--33493919	24	2.0	24	91	0	76	25	8	17	48	1.74
33495993--33496046	27	2.0	27	85	7	74	29	27	14	27	1.95
33496798--33496843	3	15.3	3	100	0	92	32	0	0	67	0.91
33503330--33503377	2	24.0	2	100	0	96	50	0	0	50	1.00
33509609--33509680	30	2.3	32	81	6	78	29	18	27	25	1.98
33509995--33510024	5	6.0	5	100	0	60	40	0	0	60	0.97
33510026--33510059	10	3.4	10	83	0	50	35	0	0	64	0.94
33511796--33511839	17	2.5	17	77	3	52	36	40	4	18	1.71
33512623--33513040	145	3.0	134	86	8	525	52	5	3	37	1.44
33512755--33512814	23	2.8	22	80	17	72	61	1	1	35	1.16
33512673--33513040	145	2.5	145	93	2	623	51	6	4	37	1.46
33512912--33512959	23	2.3	22	86	13	66	64	0	2	33	1.05
33513038--33513093	21	2.8	20	81	10	69	51	19	0	28	1.47
33514405--33514447	18	2.4	19	84	11	63	58	4	0	37	1.19
33516750--33516788	16	2.4	16	78	0	51	41	10	20	28	1.85
33516958--33517112	58	2.6	59	84	9	192	51	1	1	45	1.17
33517077--33517127	24	2.1	24	82	10	59	56	0	5	37	1.23
33523333--33523415	25	3.1	28	64	22	79	57	16	9	15	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33528195--33528241	13	2.9	18	67	29	50	25	4	0	70	1.05
33532858--33532892	6	5.8	6	89	0	52	65	0	34	0	0.93
33533736--33533762	3	9.0	3	100	0	54	66	0	0	33	0.92
33541916--33542016	36	2.8	35	89	1	148	32	15	25	25	1.96
33546786--33546884	36	2.8	36	90	0	162	33	16	26	24	1.96
33546858--33546912	28	2.0	28	96	0	101	30	18	29	21	1.97
33551687--33551784	35	2.8	36	87	3	153	33	16	26	23	1.95
33551758--33551812	28	2.0	28	92	0	92	32	18	27	21	1.96
33556561--33556688	36	3.8	35	82	11	162	34	16	26	22	1.95
33556633--33556687	28	2.0	28	92	0	92	32	18	27	21	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182