genome.fa.s445.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  100  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18328778--18328827	12	4.3	11	82	5	55	2	14	4	80	0.95
18329295--18329329	10	3.5	10	92	7	54	0	17	0	82	0.66
18330203--18330247	23	2.0	23	95	0	81	0	13	4	82	0.82
18330202--18330247	24	2.0	24	95	4	85	0	13	4	82	0.81
18330210--18330260	22	2.2	23	82	6	59	1	15	3	78	0.99
18330209--18330261	23	2.2	24	80	9	65	1	16	3	77	1.01
18330196--18330244	1	49.0	1	89	0	53	0	8	2	89	0.55
18331907--18331960	4	13.5	4	76	0	54	40	1	29	27	1.67
18331907--18331960	16	3.4	16	84	0	63	40	1	29	27	1.67
18333314--18333358	12	3.5	13	81	9	56	4	17	0	77	0.92
18333524--18333570	19	2.4	19	76	16	51	0	23	0	76	0.78
18335898--18335957	17	3.6	16	72	22	52	58	13	10	18	1.62
18336830--18337251	208	2.0	206	79	7	451	44	14	22	18	1.86
18343329--18343459	65	2.0	65	96	0	244	30	15	16	37	1.90
18347133--18347198	29	2.2	30	81	7	73	43	16	10	28	1.81
18350299--18350374	12	6.1	12	71	8	62	47	34	2	15	1.60
18356113--18356155	22	2.0	22	85	0	59	46	13	2	37	1.57
18356614--18356698	43	2.0	42	90	2	134	34	24	14	27	1.94
18357169--18357217	18	2.6	19	87	9	66	51	4	0	44	1.20
18366158--18366211	23	2.3	25	75	12	60	40	1	1	55	1.21
18366193--18366224	17	1.9	16	93	6	55	50	3	0	46	1.17
18366436--18366461	1	26.0	1	100	0	52	0	0	0	100	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18366579--18366632	22	2.5	22	78	6	56	38	0	0	61	0.96
18366580--18366623	17	2.5	17	77	3	52	34	0	0	65	0.93
18367518--18367578	30	2.0	30	87	0	86	37	0	16	45	1.47
18373414--18373572	81	2.0	81	93	0	273	47	10	16	25	1.78
18374368--18374428	18	3.4	18	72	20	65	50	6	13	29	1.66
18374581--18374608	13	2.2	13	100	0	56	21	0	35	42	1.53
18374570--18374616	7	7.0	7	76	9	53	25	0	31	42	1.55
18374570--18374623	20	2.7	20	82	0	63	24	0	31	44	1.54
18375669--18376089	143	2.9	143	77	4	357	41	12	12	33	1.81
18375719--18376159	143	3.1	143	76	4	406	41	12	13	33	1.81
18376862--18376901	21	1.9	21	89	0	62	20	22	25	32	1.98
18376812--18376941	61	2.1	61	83	8	158	30	19	20	30	1.97
18376948--18377044	40	2.4	40	78	10	108	31	11	20	36	1.88
18377190--18377395	112	1.8	112	82	6	265	34	13	13	38	1.84
18377455--18377483	8	3.6	8	100	0	58	13	10	0	75	1.04
18377755--18377817	26	2.3	29	78	13	78	30	20	12	36	1.90
18382909--18383008	18	5.6	17	73	16	62	6	16	1	77	1.02
18382976--18383020	15	3.1	15	77	6	56	2	15	0	82	0.77
18383464--18383507	11	4.0	11	82	5	54	4	15	0	79	0.89
18383471--18383507	14	2.5	15	87	12	51	5	16	0	78	0.93
18386437--18386540	35	3.0	35	84	4	138	48	8	11	31	1.70
18389595--18389633	13	3.2	13	82	14	55	46	20	7	25	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18391578--18391624	23	2.1	23	84	4	60	68	14	0	17	1.22
18393494--18393548	23	2.4	23	84	0	65	56	0	5	38	1.23
18393782--18393808	14	1.9	14	100	0	54	66	0	0	33	0.92
18395184--18395217	16	2.1	16	88	0	50	67	0	5	26	1.13
18397181--18397371	62	3.0	62	82	3	220	39	14	6	39	1.72
18408477--18408517	22	2.0	20	90	9	64	43	7	21	26	1.79
18408593--18408650	29	2.0	29	93	0	98	22	5	25	46	1.72
18408634--18408672	17	2.3	17	90	0	60	33	5	20	41	1.74
18410697--18410737	16	2.6	16	96	0	73	21	14	12	51	1.75
18410905--18411016	19	6.0	18	75	8	82	43	38	1	16	1.58
18411037--18411107	7	10.9	7	80	11	55	43	35	1	19	1.60
18411203--18411245	19	2.3	19	95	0	77	34	44	4	16	1.68
18411250--18411274	12	2.1	12	100	0	50	40	36	8	16	1.77
18411217--18411336	49	2.5	49	82	4	145	40	41	4	13	1.63
18411339--18411389	25	2.0	25	81	7	59	45	41	0	13	1.44
18429219--18429265	10	4.7	10	84	10	51	31	14	10	42	1.80
18429567--18429626	25	2.4	25	78	10	70	23	15	10	51	1.72
18435374--18435402	2	14.5	2	100	0	58	48	0	0	51	1.00
18435611--18435658	10	4.9	10	76	5	53	47	16	10	25	1.78
18435613--18435661	20	2.5	20	90	3	73	48	16	10	24	1.76
18438463--18438495	16	2.1	16	100	0	66	48	0	27	24	1.51
18439275--18439303	13	2.1	14	93	6	51	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18439273--18439313	15	2.8	15	78	17	50	60	0	2	36	1.10
18444770--18444834	27	2.4	27	92	7	107	27	9	20	43	1.82
18450790--18450839	17	2.9	17	80	11	57	20	12	20	48	1.80
18455492--18455535	23	2.0	22	86	4	61	6	15	0	77	0.97
18457943--18458009	34	1.9	35	87	3	100	16	11	26	44	1.82
18457977--18458015	20	1.9	21	94	5	71	17	12	28	41	1.87
18458048--18458142	41	2.3	41	81	10	106	17	4	28	49	1.65
18459812--18459846	18	1.9	18	88	0	52	0	8	5	85	0.73
18459993--18460055	26	2.2	28	83	10	76	23	0	6	69	1.11
18460046--18460075	3	10.0	3	100	0	60	33	0	0	66	0.92
18466293--18466333	22	1.9	21	85	5	55	29	0	29	41	1.56
18467263--18467455	97	2.0	97	91	2	316	22	21	13	42	1.88
18470303--18470342	21	2.0	20	85	5	53	30	12	15	42	1.83
18470399--18470436	19	2.0	20	89	5	60	78	2	15	2	0.97
18470269--18471988	746	2.4	724	83	8	2057	33	11	17	37	1.85
18478313--18478368	24	2.3	24	96	0	103	26	16	7	50	1.70
18479350--18479396	23	2.1	22	84	11	60	21	2	25	51	1.59
18477567--18480047	763	3.3	736	82	7	2838	31	12	16	38	1.87
18480837--18480910	7	10.4	7	74	11	62	45	33	0	20	1.51
18480895--18480941	19	2.5	19	77	19	53	46	34	0	19	1.50
18481330--18481400	26	3.0	23	72	27	67	59	2	5	32	1.35
18483022--18483080	26	2.3	24	77	8	64	50	6	28	13	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18485266--18485312	9	5.2	9	86	0	67	82	2	2	12	0.84
18487817--18487841	12	2.1	12	100	0	50	68	0	16	16	1.22
18492264--18492306	21	2.1	20	82	4	50	27	18	4	48	1.68
18498728--18498761	16	2.1	16	94	0	59	50	29	2	17	1.61
18498766--18498840	14	5.2	14	73	17	64	46	25	0	28	1.53
18498715--18498840	58	2.2	57	84	5	155	46	28	0	24	1.58
18498729--18498840	7	15.4	7	69	17	50	45	29	0	24	1.59
18500681--18500747	29	2.6	27	80	17	79	56	0	22	20	1.42
18500693--18500752	19	2.9	19	76	21	59	51	1	23	23	1.57
18500693--18500752	24	2.5	24	80	20	72	51	1	23	23	1.57
18501438--18501638	49	4.1	48	74	6	152	31	14	12	40	1.85
18501397--18501593	100	2.0	99	80	8	222	31	14	12	41	1.82
18501470--18501608	48	2.8	48	80	5	145	35	14	12	36	1.85
18503103--18503145	11	3.8	11	81	6	50	25	25	2	46	1.65
18504022--18504063	14	3.0	14	92	0	66	45	16	4	33	1.69
18510380--18510440	27	2.2	29	75	21	69	54	1	3	40	1.27
18510396--18510482	36	2.4	36	94	1	147	58	1	0	40	1.05
18514436--18514513	29	2.6	28	86	8	93	78	0	3	17	0.90
18514450--18514513	18	3.6	17	79	8	65	79	0	4	15	0.89
18514443--18514510	25	2.6	27	81	9	79	79	0	4	16	0.89
18514437--18514513	7	10.4	7	76	18	68	79	0	3	16	0.88
18524252--18524578	79	4.1	80	89	2	473	21	9	25	43	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18524252--18524581	159	2.1	158	87	3	439	22	9	25	43	1.82
18525548--18525604	24	2.4	24	93	0	96	38	8	7	45	1.62
18530552--18530602	21	2.5	21	81	9	52	54	13	7	23	1.65
18534749--18534792	22	2.0	22	82	8	54	13	6	13	65	1.44
18536075--18536107	16	2.1	16	88	11	50	9	6	6	78	1.08
18538543--18538577	13	2.6	13	90	4	52	74	11	5	8	1.22
18546465--18546506	18	2.4	18	88	4	59	35	0	2	61	1.09
18547757--18547909	76	2.0	76	100	0	306	32	15	9	42	1.79
18550644--18550685	13	3.0	14	83	16	52	47	0	2	50	1.14
18550674--18550737	23	2.8	23	76	9	60	48	0	4	46	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147