genome.fa.s445.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  77  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14308831--14308971	62	2.3	61	85	8	180	39	12	7	40	1.72
14308988--14309221	125	1.9	123	84	7	312	42	9	12	35	1.76
14308990--14309281	62	4.7	63	76	10	262	41	9	12	35	1.76
14314345--14314382	13	2.8	14	84	4	51	23	7	5	63	1.42
14315562--14316620	161	6.6	160	81	3	1063	33	9	14	41	1.79
14315580--14316640	320	3.3	319	81	4	1150	33	9	14	42	1.79
14320545--14320594	11	4.3	12	80	17	52	74	8	0	18	1.06
14320535--14320595	17	3.6	17	84	8	63	72	6	1	19	1.16
14320540--14320623	11	7.4	11	75	21	50	73	4	2	19	1.12
14320540--14320618	17	4.6	17	73	23	51	73	5	1	20	1.09
14320597--14320647	24	2.0	26	85	7	70	80	0	7	11	0.90
14321475--14321597	3	44.3	3	70	20	81	59	2	0	37	1.16
14321498--14321597	8	11.4	8	74	14	56	58	2	1	39	1.16
14321476--14321597	5	23.2	5	82	10	120	59	2	0	37	1.17
14321477--14321597	31	3.8	32	78	7	79	58	2	0	38	1.17
14321479--14321597	18	6.3	19	75	20	90	58	2	0	37	1.17
14321786--14321937	55	2.8	56	74	9	134	41	17	19	21	1.90
14322032--14322239	56	3.7	56	77	0	193	37	13	23	24	1.92
14322334--14322440	49	2.2	49	96	1	198	46	12	19	21	1.82
14332891--14332969	5	13.8	5	74	22	59	70	5	3	20	1.22
14332865--14332969	30	3.7	28	79	18	103	70	4	3	20	1.22
14333820--14333887	18	3.8	17	77	14	75	72	5	1	20	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14333814--14333887	30	2.5	28	81	16	87	71	5	2	20	1.18
14333820--14333896	19	4.2	18	69	12	59	72	5	2	19	1.15
14333788--14333887	12	8.8	11	70	16	62	71	4	3	22	1.17
14334722--14334846	3	44.3	3	68	17	72	64	2	1	32	1.16
14334742--14334775	11	2.9	12	91	8	61	58	0	5	35	1.22
14334758--14334843	5	17.2	5	73	13	70	61	3	1	33	1.20
14336141--14336190	25	2.0	26	88	11	77	54	12	0	34	1.38
14336893--14336927	3	11.7	3	100	0	70	31	0	0	68	0.90
14338543--14338581	21	1.9	21	94	5	71	23	10	5	61	1.48
14338566--14338598	13	2.4	14	90	10	50	27	0	6	66	1.15
14342310--14342350	20	2.0	20	90	9	66	31	7	24	36	1.83
14346189--14346402	93	2.3	92	88	1	302	43	9	9	37	1.69
14347264--14347304	2	20.5	2	89	0	64	43	0	4	51	1.23
14350368--14350413	18	2.6	18	82	6	58	26	6	2	65	1.28
14350589--14350640	23	2.2	24	83	10	63	28	1	3	65	1.21
14351631--14351688	7	8.7	7	73	17	52	10	1	12	75	1.11
14351732--14351807	36	2.1	36	90	0	116	53	13	5	27	1.60
14351768--14351886	45	2.5	44	81	11	114	53	12	7	26	1.65
14351927--14352107	19	8.9	20	76	14	90	53	6	3	36	1.44
14351950--14352056	19	5.6	19	82	8	103	55	7	1	35	1.39
14352048--14352111	21	3.1	21	93	2	103	51	6	4	37	1.48
14352193--14352297	19	5.7	19	73	23	91	55	10	5	28	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14352788--14352832	21	2.2	21	88	7	67	62	6	2	28	1.33
14353453--14353483	16	1.9	16	93	0	53	6	12	0	80	0.89
14353501--14353562	18	3.5	17	76	10	54	61	8	3	27	1.40
14353901--14353958	20	3.1	19	80	7	73	58	12	5	24	1.54
14354049--14354153	18	5.8	18	73	10	72	37	13	16	33	1.87
14354106--14354190	18	4.7	18	78	5	82	37	14	21	27	1.91
14354221--14354518	18	16.9	18	70	12	118	43	15	12	28	1.82
14354124--14354365	18	13.6	17	72	14	111	42	18	13	25	1.87
14354263--14354382	54	2.2	53	82	4	141	45	18	10	25	1.81
14356991--14357055	5	12.2	5	82	6	67	70	1	3	24	1.10
14356991--14357034	15	2.9	15	93	0	79	72	0	4	22	1.02
14357634--14357993	160	2.2	160	82	1	427	35	14	17	33	1.90
14357840--14358065	76	3.0	76	84	1	292	32	13	20	33	1.92
14358190--14358248	24	2.5	23	78	5	73	45	15	8	30	1.75
14358390--14358429	9	4.4	9	90	0	62	40	15	22	22	1.91
14359555--14359584	16	1.9	15	93	6	51	0	10	6	83	0.81
14362242--14362266	7	3.6	7	100	0	50	68	0	0	32	0.90
14365037--14365086	23	2.2	22	78	3	55	70	10	2	18	1.25
14365327--14365375	17	2.9	17	79	11	64	34	8	20	36	1.82
14365277--14365734	18	25.8	18	71	5	137	39	11	14	34	1.82
14365495--14365743	54	4.6	54	76	5	191	40	14	13	31	1.84
14365513--14365743	36	6.4	36	73	5	155	41	14	12	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14373455--14373538	24	3.3	24	70	17	71	58	10	5	25	1.54
14373494--14373533	12	3.0	13	82	17	55	55	12	7	25	1.63
14373494--14373531	15	2.8	14	84	15	53	55	13	7	23	1.64
14373511--14373553	19	2.3	19	80	8	52	60	11	2	25	1.43
14373615--14373673	20	3.0	19	82	7	73	54	8	5	32	1.53
14373663--14373750	19	4.6	19	79	10	76	51	6	6	35	1.55
14373681--14373760	19	4.2	19	80	6	90	51	6	6	36	1.52
14373753--14373841	23	3.7	23	72	11	88	46	11	6	35	1.66
14373759--14373873	50	2.3	50	92	0	203	46	13	7	33	1.71
14373777--14373853	23	3.2	23	67	18	66	48	12	7	31	1.70
14374088--14374162	7	10.1	7	77	16	71	77	2	2	17	1.00
14374098--14374166	12	6.0	11	76	20	61	78	1	2	17	0.95
14374088--14374162	15	5.1	14	76	17	71	77	2	2	17	1.00
14374099--14374169	30	2.3	30	86	13	101	78	1	2	16	0.94
14374099--14374162	19	3.4	18	78	19	69	79	1	3	15	0.93
14374860--14374893	15	2.3	15	94	0	59	23	8	8	58	1.56
14378963--14379010	25	2.0	24	83	4	60	31	0	2	66	1.03
14379476--14379515	20	2.0	20	90	0	62	17	5	30	47	1.69
14379485--14379532	20	2.5	20	90	6	73	14	4	27	54	1.59
14379567--14379605	13	3.0	13	84	0	51	17	7	20	53	1.68
14381294--14381326	15	2.1	16	88	11	50	0	42	6	51	1.26
14381810--14381844	17	2.2	17	90	10	56	17	0	2	80	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14381807--14381856	25	2.0	25	84	7	66	18	0	6	76	0.99
14382267--14382305	19	2.1	19	90	0	60	7	0	12	79	0.93
14382297--14382346	23	2.1	23	88	7	73	2	10	10	78	1.06
14382552--14383345	35	23.6	34	69	15	237	31	14	16	37	1.88
14382627--14382724	31	2.9	35	75	17	100	30	13	14	41	1.84
14382627--14382789	66	2.4	65	80	11	170	30	13	16	39	1.87
14382906--14382974	32	2.1	35	83	8	90	26	11	20	42	1.86
14382635--14383345	307	2.4	301	85	3	903	30	13	17	38	1.89
14383490--14383587	36	2.8	33	73	11	88	33	15	13	37	1.86
14384556--14384609	18	3.2	17	76	19	51	3	16	0	79	0.87
14384559--14384610	24	2.2	24	86	13	72	3	17	0	78	0.89
14384566--14384611	22	2.0	23	87	8	67	6	17	0	76	1.00
14384967--14385033	28	2.4	29	75	12	68	5	10	17	65	1.43
14385122--14385183	1	62.0	1	77	0	52	3	4	4	87	0.76
14385129--14385173	19	2.4	18	85	7	63	0	4	6	88	0.61
14388888--14388932	20	2.2	20	88	7	65	44	0	0	55	0.99
14388946--14389009	27	2.4	27	82	17	73	51	1	1	45	1.20
14389388--14389441	12	4.6	12	74	19	51	66	0	0	33	0.92
14395428--14395520	5	18.0	5	73	18	75	20	4	0	75	0.97
14395428--14395519	6	15.5	6	71	15	50	19	4	0	76	0.96
14395428--14395520	11	9.0	10	73	18	75	20	4	0	75	0.97
14395431--14395489	31	1.9	30	86	10	84	22	3	0	74	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14395428--14395519	36	2.4	37	80	14	98	19	4	0	76	0.96
14395428--14395520	43	2.2	41	82	14	111	20	4	0	75	0.97
14396543--14396611	5	13.6	5	71	19	54	13	5	2	78	1.05
14396616--14397135	116	4.5	113	82	7	591	44	8	13	34	1.73
14396628--14397135	57	8.7	58	87	4	625	43	8	13	34	1.74
14402330--14402428	42	2.4	42	88	3	157	25	17	22	35	1.95
14402461--14402578	41	2.9	41	89	1	173	24	18	22	33	1.97
14402461--14402614	42	3.7	41	87	2	173	22	18	24	33	1.97
14402461--14402614	41	3.7	41	85	4	166	22	18	24	33	1.97
14402622--14402672	1	51.0	1	80	0	57	90	5	0	3	0.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147