genome.fa.s445.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  66  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12423247--12423849	182	3.3	177	87	9	837	33	12	8	46	1.71
12423247--12423836	117	4.9	116	83	10	724	33	12	8	45	1.72
12423862--12423894	10	3.3	10	87	12	50	81	0	0	18	0.68
12423862--12423899	19	2.0	19	85	10	51	78	0	2	18	0.86
12423939--12423980	22	1.9	22	90	0	66	76	7	9	7	1.17
12424849--12424882	17	1.9	18	88	5	52	79	2	2	14	0.97
12424910--12425014	16	6.6	16	69	20	60	64	7	0	27	1.20
12424878--12425005	35	3.6	34	73	19	95	62	6	0	30	1.25
12428265--12428297	17	1.9	17	93	0	57	30	21	15	33	1.94
12430338--12430532	93	2.1	93	94	0	338	31	15	19	32	1.93
12435296--12435357	21	2.9	22	73	11	65	37	1	19	41	1.61
12435738--12435776	14	2.6	15	88	8	53	12	2	5	79	1.00
12438630--12438675	21	2.2	21	100	0	92	34	0	17	47	1.48
12441629--12441689	30	2.0	30	84	6	79	34	1	4	59	1.29
12442756--12442808	11	5.2	11	80	8	51	77	0	5	16	0.96
12442948--12443081	44	3.1	43	80	3	151	38	16	14	29	1.89
12443058--12443338	49	5.8	49	86	3	336	38	18	13	29	1.89
12443048--12443338	97	3.0	97	82	7	347	38	18	13	29	1.89
12443058--12443338	146	1.9	146	86	5	399	38	18	13	29	1.89
12454408--12454450	14	2.9	15	75	6	52	18	9	4	67	1.36
12456255--12456311	8	6.8	8	90	7	78	75	0	0	24	0.80
12456255--12456330	9	8.2	9	83	15	77	75	1	0	23	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12456255--12456320	17	3.9	17	82	9	73	74	0	0	25	0.82
12462716--12462964	65	3.8	65	77	5	225	23	21	11	43	1.85
12462700--12463031	130	2.6	129	79	3	335	23	21	11	43	1.84
12462812--12463031	65	3.4	64	76	11	207	23	20	10	45	1.82
12463320--12463353	7	4.6	7	89	10	50	17	0	0	82	0.67
12464204--12464287	28	3.1	28	70	16	77	22	5	0	71	1.07
12464270--12464312	16	2.8	15	75	6	50	18	2	0	79	0.85
12465331--12465378	22	2.2	22	100	0	96	41	14	8	35	1.76
12465479--12465516	20	2.0	20	89	5	60	68	2	2	26	1.16
12467537--12467677	76	1.9	76	87	3	212	44	6	17	31	1.73
12467831--12467886	25	2.1	28	83	9	73	30	14	7	48	1.70
12468346--12468392	22	2.1	23	84	4	60	6	23	2	68	1.24
12477457--12477506	22	2.3	22	82	3	57	62	4	6	28	1.37
12479322--12479384	21	3.0	22	76	17	62	46	1	1	50	1.20
12479314--12479368	21	2.8	20	78	13	60	47	0	1	50	1.11
12480663--12480810	74	2.0	75	89	2	226	44	10	15	29	1.79
12485003--12485045	18	2.6	16	75	13	50	65	2	9	23	1.34
12489202--12489623	41	10.1	41	83	4	454	42	20	12	24	1.86
12489202--12489623	84	5.1	83	84	3	474	42	20	12	24	1.86
12489954--12489993	21	1.9	21	94	0	71	40	15	5	40	1.68
12490032--12490089	21	2.7	22	89	2	91	43	18	3	34	1.68
12491300--12491383	6	13.8	6	73	23	70	2	16	0	80	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12491289--12491383	22	4.7	20	77	16	90	2	17	0	80	0.82
12491302--12491383	11	6.8	11	78	17	76	2	15	0	81	0.79
12491309--12491379	9	7.8	9	76	14	74	1	15	0	83	0.73
12491289--12491376	35	2.5	35	82	10	101	2	17	0	80	0.81
12491289--12491376	19	5.2	16	75	16	79	2	17	0	80	0.81
12491309--12491383	36	2.0	38	85	14	104	1	16	0	82	0.73
12491445--12491482	18	2.1	18	100	0	76	26	26	10	36	1.89
12491773--12491802	13	2.3	13	94	0	51	3	23	0	73	0.98
12492272--12492322	23	2.5	20	77	20	59	49	19	5	25	1.71
12495043--12495086	5	8.8	5	82	9	54	79	2	4	13	0.98
12497864--12498279	140	2.9	142	79	5	464	42	12	11	33	1.79
12497865--12498322	144	3.2	140	76	6	420	42	13	11	33	1.79
12500276--12500437	74	2.3	70	88	6	227	45	8	14	31	1.74
12500334--12500544	37	5.9	37	67	15	158	46	10	12	30	1.76
12500334--12500544	107	2.0	107	97	0	395	46	10	12	30	1.76
12500668--12500706	5	7.8	5	97	0	69	56	0	2	41	1.13
12502120--12502189	35	2.0	35	91	0	113	32	12	20	34	1.90
12508740--12508776	18	2.0	19	89	5	58	48	16	0	35	1.46
12511969--12511998	14	2.1	14	93	0	51	33	40	10	16	1.82
12513809--12513838	14	2.1	14	93	0	51	33	40	10	16	1.82
12517228--12517268	9	4.8	9	77	22	52	75	0	0	24	0.80
12520138--12520175	15	2.6	15	83	4	51	81	2	15	0	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12521281--12521325	19	2.2	20	92	7	74	44	0	6	48	1.29
12522577--12522629	17	3.2	17	76	12	56	50	3	1	43	1.30
12522591--12522636	18	2.5	19	82	13	60	52	4	2	41	1.33
12522649--12522787	31	4.5	31	73	8	113	41	5	10	42	1.61
12522643--12522805	62	2.6	61	84	5	211	43	5	11	39	1.63
12528021--12528071	22	2.3	23	86	6	70	33	9	15	41	1.80
12532046--12532113	20	3.3	21	75	17	70	50	5	4	39	1.47
12532021--12532113	21	4.5	20	70	16	55	46	5	6	41	1.52
12532268--12532307	16	2.3	18	87	12	57	70	0	0	30	0.88
12545031--12545097	33	2.1	32	85	2	89	49	5	23	20	1.71
12545156--12545182	2	13.5	2	100	0	54	48	0	0	51	1.00
12550042--12550111	33	2.2	31	80	12	79	51	5	4	38	1.45
12550447--12550483	5	7.4	5	93	0	65	0	2	18	78	0.87
12555154--12555203	22	2.3	22	80	10	59	66	2	2	30	1.14
12555241--12555285	22	2.0	22	82	0	54	44	0	0	55	0.99
12555400--12555456	30	1.9	30	92	0	96	31	14	5	49	1.65
12571137--12571166	2	15.0	2	100	0	60	0	50	0	50	1.00
12577283--12577324	3	13.7	3	95	5	75	30	2	0	66	1.04
12579329--12579372	23	2.0	22	86	4	61	50	9	2	38	1.47
12580563--12580611	8	6.1	8	78	0	53	36	0	2	61	1.08
12580601--12580652	22	2.5	22	93	6	90	50	0	0	50	1.00
12581210--12581243	2	17.5	2	93	6	61	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12589701--12589750	21	2.3	23	83	13	70	54	4	6	36	1.44
12590902--12590952	26	2.0	26	92	0	84	33	9	5	50	1.59
12595447--12595676	115	1.9	120	90	6	371	49	13	9	28	1.72
12595774--12595916	70	2.0	71	94	2	252	51	13	16	18	1.77
12596039--12596082	21	2.2	20	87	4	61	29	4	0	65	1.12
12596248--12596348	21	4.7	20	73	17	69	60	0	0	37	1.10
12598093--12598132	16	2.5	17	84	12	57	65	0	0	35	0.93
12601927--12603154	614	2.0	611	96	0	2251	31	22	14	31	1.94
12606030--12606068	20	1.9	21	94	5	71	25	20	5	48	1.70
12626957--12627011	21	2.6	23	74	25	59	45	3	0	50	1.19
12629833--12629880	15	3.1	15	80	11	51	39	4	0	56	1.19
12629832--12629880	17	3.0	17	82	8	66	40	4	0	55	1.19
12630372--12630505	67	2.0	67	97	0	250	41	8	16	33	1.80
12632861--12632912	23	2.3	23	86	0	68	55	0	11	32	1.36
12636037--12636079	3	14.3	3	85	9	61	34	0	2	62	1.08
12643951--12643985	9	3.7	9	85	14	52	62	0	0	37	0.95
12660438--12660465	2	14.0	2	100	0	56	50	50	0	0	1.00
12663665--12663719	27	2.0	27	92	0	92	45	9	20	25	1.80
12664464--12664528	33	2.0	33	84	6	87	33	6	26	33	1.81
12664897--12664970	6	12.3	6	83	0	76	33	39	0	27	1.57
12664919--12664972	3	18.0	3	78	14	58	33	37	0	29	1.58
12664897--12664964	18	3.8	18	94	0	118	33	39	0	26	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12670249--12670503	104	2.4	105	81	4	309	41	7	17	34	1.76
12670263--12670589	104	3.2	104	79	6	308	39	6	17	36	1.76
12671005--12671038	9	3.9	9	88	7	52	52	0	2	44	1.16
12671014--12671132	23	5.1	23	70	15	68	46	0	0	52	1.06
12671014--12671163	41	3.7	41	77	11	143	46	0	0	53	1.05
12671074--12671167	36	2.5	37	87	8	127	47	0	0	52	1.00
12671070--12671167	38	2.6	39	74	11	105	47	0	0	52	1.00
12679868--12679905	14	2.6	14	80	19	51	31	2	0	65	1.06
12683149--12683199	24	2.1	24	96	0	93	11	7	27	52	1.65
12686965--12687380	60	6.9	60	84	7	508	33	12	7	46	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147