genome.fa.s445.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  112  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20149141--20149193	20	2.7	20	91	2	90	16	0	43	39	1.49
20149183--20149248	27	2.6	25	80	7	78	21	3	27	48	1.64
20149325--20149359	13	2.7	13	90	0	52	25	0	31	42	1.55
20154543--20154844	150	2.0	150	91	1	489	34	11	15	38	1.84
20162074--20162116	3	14.3	3	100	0	86	32	0	32	34	1.58
20162627--20162657	2	15.5	2	100	0	62	48	0	0	51	1.00
20162880--20162904	2	12.5	2	100	0	50	48	0	0	52	1.00
20169096--20169126	15	2.1	15	93	0	53	32	19	29	19	1.96
20175073--20175108	17	2.1	18	89	5	56	66	0	2	30	1.06
20175534--20175569	2	18.0	2	100	0	72	50	0	0	50	1.00
20178076--20178110	2	17.5	2	88	11	54	45	0	2	51	1.16
20179468--20179493	2	13.0	2	100	0	52	50	0	0	50	1.00
20192864--20192909	23	2.0	23	91	0	74	26	8	21	43	1.81
20194194--20194227	2	17.0	2	100	0	68	0	0	50	50	1.00
20198600--20198632	1	33.0	1	100	0	66	0	0	0	100	0.00
20199839--20199888	16	3.0	16	88	5	64	30	0	0	70	0.88
20199850--20199895	16	2.9	16	90	3	67	32	0	0	67	0.91
20199771--20199926	85	1.9	84	80	12	187	34	3	1	59	1.27
20200239--20200282	17	2.7	17	89	6	65	54	2	0	43	1.12
20201161--20201219	19	3.1	19	74	13	59	40	5	3	50	1.41
20203024--20203294	150	1.8	149	85	1	380	41	7	5	46	1.53
20203884--20203996	57	2.0	57	100	0	226	36	10	12	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20206324--20206365	22	2.0	21	85	4	57	45	9	14	30	1.77
20209441--20209490	22	2.3	22	82	0	64	48	6	6	40	1.52
20209494--20209747	22	11.7	22	66	18	106	54	3	7	34	1.45
20209564--20209690	64	2.0	64	81	9	152	56	3	7	33	1.42
20209657--20209741	33	2.6	33	77	1	82	54	1	8	36	1.38
20210064--20210399	22	15.3	22	69	12	104	51	5	8	35	1.54
20210137--20210750	22	28.1	22	70	10	197	48	5	9	36	1.59
20210760--20210889	22	6.0	22	74	7	95	43	8	6	41	1.60
20210775--20210876	43	2.3	44	83	5	118	45	6	6	41	1.58
20211404--20211578	22	8.0	22	77	2	109	45	9	8	37	1.66
20211762--20211867	22	4.9	22	72	6	81	47	4	8	39	1.55
20219172--20219257	33	2.6	33	83	0	118	40	17	15	26	1.89
20221539--20221571	3	11.0	3	100	0	66	66	0	0	33	0.92
20231044--20231076	14	2.4	14	94	0	57	48	0	3	48	1.17
20237142--20237166	13	1.9	13	100	0	50	56	12	8	24	1.62
20249763--20249821	17	3.5	17	79	4	66	27	3	30	38	1.73
20249764--20249830	34	2.0	34	82	11	84	28	4	28	38	1.76
20257399--20257449	26	2.0	26	84	3	68	39	11	0	49	1.40
20257634--20257806	88	1.9	90	91	2	287	27	9	5	57	1.54
20259311--20259371	2	30.5	2	100	0	122	50	0	49	0	1.00
20260395--20260436	18	2.2	20	87	8	61	50	14	7	28	1.69
20263526--20263567	11	3.8	11	84	6	50	80	2	2	14	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20263546--20263583	20	1.9	20	84	10	51	81	5	0	13	0.85
20266595--20266634	20	2.0	20	100	0	80	40	10	35	15	1.80
20269106--20269179	24	3.2	23	77	9	71	72	4	2	20	1.13
20270003--20270096	3	32.3	3	73	21	67	61	4	1	32	1.22
20270001--20270039	20	2.0	20	100	0	78	71	2	0	25	0.98
20270027--20270099	10	7.4	9	78	15	58	58	4	1	35	1.25
20270059--20270101	22	1.9	23	86	13	63	62	2	0	34	1.08
20270330--20270677	117	2.9	116	76	9	328	41	14	24	19	1.89
20271658--20271723	11	6.1	11	83	11	66	1	7	6	84	0.82
20271671--20271722	10	5.2	10	93	6	72	0	1	7	90	0.53
20271671--20271722	1	52.0	1	80	0	59	0	1	7	90	0.53
20274906--20274982	35	2.2	35	83	4	93	63	2	7	25	1.34
20276071--20276108	16	2.5	15	91	8	60	68	5	7	18	1.34
20276968--20277068	3	34.3	3	77	18	97	61	2	0	34	1.18
20276955--20277071	9	12.4	9	79	15	66	60	3	0	35	1.19
20277555--20277601	21	2.2	21	96	0	85	25	17	12	44	1.84
20285809--20285995	60	3.1	60	76	7	182	21	22	13	42	1.88
20285828--20286017	60	3.2	59	74	5	168	22	22	13	41	1.89
20286194--20286234	3	13.7	3	100	0	82	31	0	0	68	0.90
20286233--20286282	3	16.7	3	100	0	100	0	0	32	68	0.90
20286546--20286629	15	5.7	15	73	8	64	20	3	26	50	1.64
20289299--20289325	5	5.4	5	100	0	54	81	0	0	18	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20289590--20289653	27	2.4	26	82	12	76	37	7	3	51	1.47
20292339--20292383	21	2.1	22	84	12	58	35	0	2	62	1.08
20293838--20293892	23	2.5	21	77	13	58	54	0	0	45	0.99
20293929--20294001	31	2.4	31	90	0	110	36	8	8	46	1.64
20294473--20294521	23	2.2	23	85	7	66	63	4	4	28	1.31
20294473--20294535	21	2.9	23	81	9	71	60	3	3	33	1.28
20298333--20298382	25	2.0	26	88	4	75	76	0	16	8	1.02
20299777--20299972	43	4.5	43	76	10	166	28	9	19	42	1.83
20299868--20299962	47	2.0	47	83	0	118	27	9	17	45	1.80
20300109--20300211	43	2.4	42	82	6	118	35	14	16	33	1.89
20300209--20300378	44	4.0	42	77	10	159	28	11	22	37	1.90
20302035--20302068	12	2.7	13	86	9	52	73	5	2	17	1.16
20302021--20302068	25	1.9	25	83	8	62	72	6	2	18	1.15
20302245--20302296	17	3.1	17	70	10	52	55	1	3	38	1.29
20302316--20302355	21	1.9	22	90	10	66	80	5	5	10	1.02
20302442--20302482	12	3.2	12	80	12	55	31	41	14	12	1.83
20302959--20303008	24	2.0	24	84	3	64	40	42	2	16	1.59
20303810--20303840	16	1.9	16	93	0	53	61	3	3	32	1.28
20304215--20304292	7	10.9	7	69	20	54	55	30	0	14	1.40
20304210--20304271	22	2.8	22	97	0	115	56	33	0	9	1.32
20304215--20304292	15	5.4	14	73	18	54	55	30	0	14	1.40
20311278--20311319	19	2.2	20	91	4	68	85	0	14	0	0.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20312504--20312532	15	1.9	15	100	0	58	20	20	13	44	1.85
20313157--20313199	22	2.0	22	95	0	77	34	25	11	27	1.91
20313177--20313342	88	1.9	88	84	0	224	23	15	15	45	1.85
20313177--20313365	88	2.1	88	81	0	207	24	17	14	42	1.87
20315805--20315887	22	3.8	22	85	3	114	51	32	1	14	1.50
20315871--20315901	15	2.1	15	93	0	53	54	22	0	22	1.44
20317637--20317667	2	15.5	2	100	0	62	51	0	0	48	1.00
20317667--20317691	2	12.5	2	100	0	50	52	0	48	0	1.00
20318688--20318735	24	2.0	24	91	0	78	12	16	12	58	1.63
20320787--20320884	47	2.1	47	92	0	160	29	16	4	50	1.64
20321257--20321295	18	2.2	18	100	0	78	56	10	0	33	1.33
20321264--20321295	10	3.4	10	83	16	50	53	12	0	34	1.39
20325535--20326009	128	3.7	126	75	9	370	40	7	9	43	1.64
20330533--20330567	17	2.0	17	88	5	52	20	0	2	77	0.90
20330958--20331015	20	2.7	23	87	10	79	74	8	0	17	1.06
20330967--20331015	11	4.5	11	80	14	66	73	8	0	18	1.07
20330959--20331019	5	11.8	5	78	11	54	75	8	0	16	1.03
20331957--20332031	3	25.0	3	94	0	114	61	0	5	33	1.19
20332347--20332646	34	8.8	34	69	11	157	39	20	14	26	1.90
20332347--20332645	136	2.2	137	89	2	458	39	20	14	26	1.90
20332830--20332875	17	2.7	17	93	0	83	41	15	15	28	1.87
20340659--20340686	13	2.2	13	100	0	56	21	21	0	57	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20344110--20344149	15	2.7	15	100	0	80	57	12	5	25	1.55
20345509--20345537	3	9.7	3	100	0	58	65	0	0	34	0.93
20348770--20348826	20	2.8	20	81	7	71	19	22	26	31	1.98
20357086--20357167	41	2.0	41	86	9	114	17	14	28	40	1.88
20357202--20357266	20	3.2	20	73	16	62	21	21	26	30	1.98
20361715--20361750	17	2.1	17	89	0	54	27	0	11	61	1.30
20361892--20361979	43	2.0	43	91	0	140	44	3	13	38	1.61
20361897--20361994	43	2.3	43	85	1	126	45	4	10	39	1.57
20362683--20362719	19	1.9	19	94	0	65	29	13	0	56	1.37
20363212--20363309	51	1.9	51	87	0	142	35	9	13	41	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147