genome.fa.s445.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  81  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14990096--14990914	370	2.2	368	91	4	1325	38	22	17	22	1.93
14992109--14992168	11	5.6	11	82	11	54	1	15	0	83	0.73
14992092--14992181	30	2.8	31	81	8	101	3	14	1	81	0.88
14992090--14992180	14	6.6	14	76	17	59	3	14	1	81	0.88
14992092--14992166	10	7.6	10	77	12	75	2	13	0	84	0.74
14992092--14992179	31	2.7	32	81	10	108	3	13	1	81	0.87
14992092--14992180	42	2.2	40	82	6	106	3	13	1	82	0.86
14992092--14992165	9	7.8	9	74	12	60	2	13	0	83	0.74
14995878--14996498	161	3.9	160	93	2	1002	39	16	14	28	1.89
14996836--14996880	19	2.4	19	84	0	63	22	20	31	26	1.98
14996942--14997014	31	2.4	31	88	4	103	27	23	26	23	2.00
14997425--14997458	3	11.7	3	93	6	61	70	0	0	29	0.87
14997501--14997597	40	2.3	41	80	15	103	63	6	0	29	1.18
14999764--14999809	11	4.3	11	78	13	51	65	0	34	0	0.93
15000152--15000184	15	2.1	16	88	5	50	75	0	3	21	0.93
15000284--15000315	14	2.3	14	94	0	55	65	6	0	28	1.16
15000228--15000363	70	1.9	71	84	10	181	49	7	10	33	1.65
15000319--15000533	60	3.6	58	77	10	195	46	6	12	33	1.68
15004095--15004136	14	3.0	14	83	10	50	83	2	11	2	0.84
15006435--15006748	45	7.3	41	76	8	164	25	11	18	44	1.84
15007699--15007750	4	14.5	4	74	22	53	23	0	0	76	0.78
15007789--15007907	59	2.1	56	85	4	157	49	6	8	35	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15007890--15007921	14	2.3	14	94	0	55	65	6	0	28	1.16
15007834--15007969	70	1.9	71	85	7	188	47	5	11	35	1.62
15007993--15008117	54	2.3	54	89	5	207	46	9	11	32	1.72
15009109--15009155	11	4.7	11	75	20	50	65	6	0	27	1.16
15009112--15009146	18	2.0	18	94	5	63	62	5	0	31	1.18
15009111--15009154	10	4.6	10	78	21	58	65	6	0	27	1.17
15010147--15010200	13	4.0	13	76	9	54	55	0	1	42	1.10
15022062--15022103	2	21.0	2	90	0	66	45	0	2	52	1.13
15022223--15022256	15	2.2	16	94	5	61	67	0	2	29	1.05
15025148--15025179	3	10.3	3	93	6	55	65	0	0	34	0.93
15026426--15026475	21	2.4	21	84	15	61	38	4	0	58	1.17
15029086--15029122	2	18.5	2	94	0	65	54	0	0	45	1.00
15029707--15029774	30	2.3	30	86	0	91	32	16	7	44	1.75
15037553--15037595	16	2.7	16	82	7	52	39	6	16	37	1.75
15041166--15041207	21	2.0	21	100	0	84	19	38	19	23	1.93
15041514--15041547	6	5.7	6	100	0	68	67	32	0	0	0.91
15042840--15043313	153	3.0	159	90	4	735	39	16	15	28	1.89
15043346--15043378	1	33.0	1	100	0	66	100	0	0	0	0.00
15043329--15043378	12	3.8	14	89	7	54	88	4	0	8	0.64
15043713--15043758	20	2.3	20	84	0	56	17	21	28	32	1.96
15043776--15043814	20	2.0	20	100	0	78	5	20	30	43	1.73
15043782--15043826	20	2.2	20	84	0	54	11	22	33	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15043833--15043896	19	3.7	19	67	30	54	29	20	26	23	1.99
15044516--15044561	20	2.3	20	84	0	65	19	30	32	17	1.95
15044689--15045109	83	5.1	83	93	1	668	33	24	17	23	1.97
15044689--15045109	41	10.1	42	92	3	642	33	24	17	23	1.97
15048932--15048961	15	2.1	15	93	6	53	23	6	23	46	1.75
15049919--15050392	152	3.0	160	89	5	727	39	16	15	28	1.89
15050423--15050454	1	32.0	1	100	0	64	100	0	0	0	0.00
15050407--15050454	11	3.9	13	89	8	50	87	4	0	8	0.66
15050787--15050832	20	2.3	20	84	0	56	17	21	28	32	1.96
15050850--15050892	20	2.2	20	100	0	86	4	25	32	37	1.77
15050856--15050900	20	2.2	20	88	0	63	11	24	33	31	1.90
15050907--15050970	19	3.7	19	67	30	54	29	20	26	23	1.99
15051624--15051669	20	2.3	20	84	0	65	19	30	32	17	1.95
15055647--15055682	13	2.6	14	91	4	56	50	0	0	50	1.00
15058157--15058201	3	15.3	3	90	4	74	71	0	0	28	0.87
15058430--15058844	217	1.9	218	87	2	602	54	9	11	23	1.66
15058798--15058839	16	2.8	16	78	10	52	59	0	7	33	1.25
15060885--15060949	30	2.2	30	82	0	76	35	20	4	40	1.73
15067188--15067255	30	2.3	31	76	7	77	32	5	22	39	1.78
15069480--15069515	17	2.1	17	89	0	54	61	8	2	27	1.39
15069829--15069855	13	2.1	13	100	0	54	59	0	7	33	1.25
15070768--15072801	935	2.2	925	79	7	2249	52	6	10	30	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15072055--15072109	22	2.7	20	76	15	58	56	7	3	32	1.44
15072076--15072565	218	2.3	212	81	5	554	52	6	9	31	1.59
15071969--15072830	213	4.0	209	75	9	639	52	6	10	31	1.60
15072729--15072763	17	2.1	17	88	0	52	65	2	0	31	1.07
15072850--15073277	212	2.0	219	80	6	482	51	5	10	32	1.58
15074429--15074545	38	3.1	38	66	13	98	58	1	1	37	1.18
15080835--15080870	3	12.0	3	100	0	72	33	0	0	66	0.92
15084004--15084075	18	3.5	21	70	22	64	69	4	0	26	1.06
15084005--15084078	21	3.6	21	70	17	66	68	4	0	27	1.07
15084931--15084960	10	3.0	10	90	0	51	33	0	0	66	0.92
15088164--15088220	20	2.8	19	77	15	53	71	5	3	19	1.19
15088646--15088796	15	10.1	15	75	11	87	52	27	0	18	1.50
15088676--15088781	14	7.1	15	71	11	67	54	28	0	16	1.48
15088646--15088723	31	2.5	31	85	6	97	52	28	0	19	1.46
15090732--15090770	19	2.1	19	85	4	53	20	15	2	61	1.45
15094988--15095066	41	1.9	41	94	5	142	37	15	12	34	1.85
15095306--15095349	22	2.0	22	86	8	63	29	22	15	31	1.95
15095341--15095691	88	4.0	88	82	4	402	18	21	18	40	1.91
15095593--15095967	109	3.4	110	82	2	421	20	20	18	40	1.91
15095593--15095975	111	3.5	110	82	2	419	20	20	18	41	1.91
15097750--15097890	30	4.7	29	74	8	122	46	30	2	21	1.63
15097841--15097930	14	6.1	14	76	12	74	55	27	0	16	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15100823--15100847	7	3.6	7	100	0	50	48	12	0	40	1.40
15101880--15102234	59	6.0	57	81	13	409	34	13	7	43	1.73
15101880--15102234	116	3.0	116	86	8	468	34	13	7	43	1.73
15102196--15102273	39	2.0	39	100	0	156	30	10	7	51	1.64
15102152--15102330	99	1.8	96	90	8	290	32	11	8	47	1.70
15102080--15102373	156	1.9	155	94	2	518	33	12	7	46	1.70
15102235--15102373	57	2.4	59	86	10	212	34	12	6	46	1.68
15102454--15102492	8	5.4	8	80	20	50	79	7	0	12	0.93
15102454--15102504	21	2.5	20	87	12	77	80	5	1	11	0.97
15102454--15102506	13	3.9	13	82	5	61	81	5	1	11	0.94
15102840--15102885	20	2.3	20	92	3	76	23	21	28	26	1.99
15103017--15103064	25	1.9	25	83	8	62	41	16	8	33	1.78
15105680--15105725	21	2.2	22	88	7	69	39	2	0	58	1.10
15111462--15111488	14	1.9	14	100	0	54	74	3	0	22	0.98
15114941--15114985	15	3.0	15	93	0	81	24	26	2	46	1.64
15122169--15122228	8	7.8	8	88	7	97	76	0	13	10	1.01
15122169--15122228	15	3.9	16	93	4	97	76	0	13	10	1.01
15123235--15123568	41	8.1	41	89	4	487	23	16	23	35	1.95
15123826--15123872	21	2.4	20	80	20	55	27	2	2	68	1.13
15123812--15123957	4	35.8	4	67	20	56	27	2	3	67	1.18
15123826--15123946	19	6.9	17	68	25	58	29	2	3	64	1.22
15123897--15123939	17	2.3	19	84	11	54	32	2	2	62	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15124025--15124055	16	1.9	16	93	0	53	16	6	12	64	1.47
15124059--15124108	18	2.9	17	70	18	50	24	10	0	66	1.22
15124988--15125046	17	3.6	16	73	15	57	13	8	1	76	1.09
15125016--15125057	22	1.9	22	90	9	68	16	11	0	71	1.14
15125070--15125227	58	2.7	58	94	0	282	44	6	12	35	1.69
15126359--15126422	3	21.7	3	93	3	112	67	0	1	31	1.00
15128351--15128393	22	2.0	22	86	9	61	72	4	6	16	1.24
15128441--15128472	14	2.3	14	94	0	55	68	0	9	21	1.17
15129967--15130009	22	2.0	23	81	9	54	76	2	6	13	1.08
15130459--15130515	28	1.9	31	86	10	84	38	7	7	47	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147