genome.fa.s445.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  67  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12687386--12687477	35	2.6	35	78	13	100	72	2	8	16	1.19
12687386--12687449	18	3.8	17	76	17	53	75	0	9	15	1.05
12687563--12687587	5	5.0	5	100	0	50	0	40	40	20	1.52
12687873--12687924	20	2.7	19	85	5	68	26	17	25	30	1.97
12688803--12688869	1	67.0	1	78	0	71	1	2	5	89	0.63
12688803--12688870	35	1.9	36	90	3	111	2	2	5	88	0.70
12688876--12689413	42	13.0	42	92	3	846	36	22	18	22	1.95
12688876--12689413	125	4.3	126	91	4	846	36	22	18	22	1.95
12688876--12689413	83	6.5	83	92	4	833	36	22	18	22	1.95
12694498--12694847	60	5.9	60	83	9	432	33	12	7	46	1.71
12695528--12695576	25	2.0	24	88	4	71	57	18	4	20	1.57
12695852--12695930	34	2.4	33	77	12	83	68	3	6	21	1.28
12696673--12696730	21	2.8	20	84	10	71	51	3	36	8	1.49
12698815--12698852	18	2.1	18	95	0	67	50	15	13	21	1.78
12699991--12700036	2	23.5	2	78	12	51	47	2	2	47	1.26
12699988--12700035	16	3.1	16	85	5	64	45	2	4	47	1.33
12702813--12702872	27	2.3	26	85	2	75	31	5	0	63	1.16
12702826--12702872	21	2.2	22	84	3	60	31	6	0	61	1.21
12703723--12703779	22	2.5	22	76	21	64	31	0	0	68	0.90
12703770--12703836	22	3.0	22	72	12	64	49	2	1	46	1.26
12703812--12703848	15	2.5	15	86	0	56	51	0	0	48	1.00
12703985--12704019	18	2.1	16	89	10	52	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12706544--12706594	24	2.2	22	86	6	66	41	0	5	52	1.25
12708282--12708306	5	5.0	5	100	0	50	20	20	0	60	1.37
12709407--12709462	17	3.2	17	72	27	55	51	0	0	48	1.00
12709497--12709529	17	2.0	16	94	5	57	48	0	0	51	1.00
12709981--12710073	13	8.1	12	75	20	76	68	0	0	31	0.90
12709978--12710020	16	2.6	16	89	10	61	69	0	0	30	0.88
12709975--12710082	24	4.5	25	76	17	104	67	0	0	32	0.91
12709988--12710032	16	2.9	16	87	9	58	73	0	0	26	0.84
12710016--12710079	32	2.0	32	84	6	85	70	0	0	29	0.88
12709976--12710077	16	6.3	16	67	21	52	69	0	0	30	0.89
12710417--12710504	42	2.1	42	82	0	104	51	5	2	40	1.38
12719380--12719552	62	2.8	62	82	10	176	38	12	14	35	1.83
12723929--12723982	4	14.0	4	75	14	51	70	1	3	24	1.13
12723929--12723970	11	3.7	11	81	15	50	71	0	2	26	0.98
12724809--12724856	22	2.2	22	84	0	60	47	14	6	31	1.69
12724848--12724885	20	1.9	20	94	0	67	44	10	13	31	1.77
12724848--12724895	20	2.5	19	86	10	62	47	10	12	29	1.74
12724884--12725227	18	18.9	17	69	20	119	51	13	9	26	1.69
12724868--12725040	54	3.2	54	78	9	190	51	12	10	24	1.72
12724883--12725222	36	9.3	36	71	12	149	52	13	8	25	1.69
12724897--12725036	74	1.9	72	82	5	174	50	12	10	25	1.73
12724927--12725122	68	2.8	69	79	4	187	52	12	9	25	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12725110--12725192	43	1.9	43	80	4	96	49	15	8	26	1.73
12725887--12725952	34	1.9	34	93	0	114	25	37	12	24	1.90
12727860--12728246	59	6.5	58	82	8	440	35	13	7	42	1.73
12727945--12727983	16	2.4	16	86	4	51	41	0	7	51	1.31
12727860--12728245	119	3.3	117	86	5	510	35	13	7	43	1.73
12727860--12728245	178	2.2	177	89	5	584	35	13	7	43	1.73
12728282--12728355	5	14.4	5	78	13	71	81	2	4	12	0.94
12728268--12728333	14	4.6	14	79	7	62	80	3	6	10	1.00
12728268--12728355	28	3.1	26	78	18	79	79	2	5	12	1.00
12728285--12728344	19	3.1	18	79	15	66	83	3	3	10	0.88
12728303--12728355	11	4.9	11	84	9	65	81	1	3	13	0.92
12728267--12728370	27	4.0	25	75	18	79	76	1	5	15	1.05
12729311--12729400	6	14.5	6	72	17	51	75	2	5	16	1.09
12729444--12729516	25	3.0	25	78	9	64	67	5	6	20	1.35
12729593--12729745	41	3.8	40	94	3	261	36	23	15	24	1.94
12729593--12729745	81	1.9	82	94	1	272	36	23	15	24	1.94
12730742--12730826	17	5.3	16	75	22	54	14	7	0	78	0.94
12730768--12730824	8	7.0	8	88	4	87	12	1	0	85	0.66
12730770--12730823	7	7.9	7	80	15	60	11	1	0	87	0.63
12730750--12730824	33	2.2	34	83	6	91	13	4	0	82	0.80
12733053--12734047	501	2.0	501	97	0	1882	37	7	18	36	1.80
12735068--12735100	16	2.1	16	100	0	66	39	0	18	42	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12738962--12738992	16	1.9	16	93	0	53	6	22	3	67	1.28
12744504--12745134	60	10.7	57	84	6	685	35	13	6	44	1.70
12744504--12745135	59	10.7	59	84	5	755	35	13	6	44	1.70
12744505--12745136	177	3.6	173	87	4	843	35	13	6	44	1.70
12745150--12745229	11	7.4	11	80	13	78	78	2	3	15	0.99
12745160--12745229	5	13.4	5	81	11	79	80	2	2	14	0.95
12745261--12745289	8	3.6	8	100	0	58	75	10	0	13	1.04
12746376--12746419	11	3.8	12	82	11	56	72	4	0	22	1.02
12746353--12746427	25	3.1	25	83	7	84	69	5	4	21	1.25
12748597--12748640	6	7.3	6	87	7	63	61	2	0	36	1.09
12749065--12749110	23	2.0	24	86	4	67	84	6	6	2	0.84
12749165--12749198	17	1.9	18	88	5	52	79	0	11	8	0.94
12749809--12749839	2	15.5	2	100	0	62	51	0	0	48	1.00
12750693--12750740	3	16.0	3	86	0	51	0	39	0	60	0.97
12753799--12753836	19	2.0	19	100	0	76	31	15	10	42	1.81
12755968--12755999	14	2.4	14	94	5	57	43	9	0	46	1.35
12758498--12758549	26	2.0	26	85	7	70	55	0	0	44	0.99
12759750--12759791	14	3.0	14	75	10	50	61	0	0	38	0.96
12761237--12761264	13	2.2	13	100	0	56	57	0	0	42	0.99
12762532--12762580	25	1.9	26	83	4	64	38	12	6	42	1.67
12762796--12762832	16	2.3	16	90	0	56	5	5	2	86	0.78
12762790--12762832	22	1.9	23	90	4	70	6	4	2	86	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12763436--12763471	16	2.4	14	83	16	54	66	13	0	19	1.24
12763441--12763475	16	2.2	16	100	0	70	65	17	0	17	1.27
12765593--12765640	22	2.1	21	85	11	60	2	35	0	62	1.07
12766350--12766451	42	2.4	42	85	0	132	47	16	9	26	1.78
12766996--12767078	22	3.7	22	83	8	105	37	16	9	36	1.82
12767602--12767756	64	2.4	64	86	0	211	30	20	10	38	1.86
12768324--12768398	24	2.9	26	83	13	93	8	9	1	81	0.94
12768351--12768405	9	6.4	9	75	10	53	5	12	1	80	0.97
12768323--12768411	26	3.4	26	75	17	78	8	11	1	78	1.01
12769932--12769966	18	1.9	18	88	11	54	74	0	11	14	1.08
12778486--12778521	15	2.3	16	90	4	56	5	5	2	86	0.79
12778735--12778765	16	1.9	16	93	0	53	74	9	12	3	1.19
12778768--12778822	25	2.3	23	84	9	65	74	5	1	18	1.10
12780238--12780521	141	2.0	140	96	0	523	27	22	22	27	1.99
12789275--12789313	3	13.0	3	94	0	69	0	35	0	64	0.94
12793046--12793072	7	3.9	7	100	0	54	14	0	0	85	0.61
12794791--12795257	210	2.2	211	90	3	726	32	16	20	31	1.94
12797272--12797314	2	21.5	2	95	0	77	46	0	0	53	1.00
12804512--12804546	14	2.5	14	95	0	61	42	22	8	25	1.82
12806364--12806415	23	2.3	23	80	10	61	30	1	0	67	1.02
12815509--12815590	41	2.0	41	83	4	103	53	3	1	41	1.26
12815611--12815640	13	2.4	13	94	5	53	13	3	0	83	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12815611--12815640	6	4.8	6	92	8	51	13	3	0	83	0.77
12816017--12816060	20	2.3	19	92	4	70	31	0	0	68	0.90
12816017--12816062	10	4.7	10	81	5	58	34	0	0	65	0.93
12816096--12816134	12	3.2	12	78	7	51	61	0	0	38	0.96
12816541--12816592	18	2.7	19	70	8	52	51	0	0	48	1.00
12816535--12816609	31	2.4	33	78	13	86	48	1	0	50	1.09
12816537--12816603	32	2.1	33	83	13	86	46	1	0	52	1.09
12824855--12824897	21	2.0	22	86	13	63	30	9	13	46	1.75
12825043--12825093	25	2.0	26	85	7	70	23	7	3	64	1.37
12832426--12832530	52	2.0	52	83	3	131	42	7	22	26	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147