genome.fa.s445.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  35  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7219321--7219345	1	25.0	1	100	0	50	0	0	0	100	0.00
7222605--7223204	316	1.9	313	96	1	1101	37	17	14	30	1.90
7222605--7223204	157	3.8	157	97	1	1103	37	17	14	30	1.90
7223228--7223258	16	1.9	16	93	0	53	80	6	0	12	0.89
7223638--7223680	19	2.2	20	95	4	79	4	27	30	37	1.77
7223648--7223687	19	2.1	19	85	0	53	12	25	30	32	1.92
7223693--7223751	31	1.9	31	96	0	109	23	23	28	23	1.99
7224099--7224200	31	3.3	30	76	14	84	66	2	7	22	1.31
7224114--7224200	33	2.6	33	80	14	106	65	3	8	22	1.35
7224192--7224249	12	5.0	12	78	19	61	75	1	0	22	0.89
7224157--7224247	23	3.6	25	75	18	82	72	2	2	23	1.07
7224192--7224247	6	9.2	6	74	18	53	76	1	0	21	0.87
7224424--7224488	20	3.2	20	91	0	94	20	30	32	16	1.95
7225825--7225887	17	3.7	17	84	0	90	49	23	0	26	1.51
7226628--7226658	16	1.9	16	93	0	53	29	6	3	61	1.37
7227134--7227183	26	2.0	24	84	7	64	52	6	2	40	1.38
7227909--7228010	33	3.3	32	78	16	106	58	19	0	20	1.45
7229741--7229795	22	2.6	21	82	2	65	47	10	10	30	1.73
7229785--7229912	42	3.1	42	74	8	109	48	8	5	37	1.57
7234243--7234371	8	16.8	8	82	12	137	12	3	10	74	1.18
7235471--7235529	29	2.1	28	90	9	95	32	13	6	47	1.69
7235989--7236050	29	2.1	29	96	0	115	54	4	6	33	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7237887--7237942	27	2.1	27	86	0	76	33	14	0	51	1.42
7250954--7251020	14	4.9	12	72	24	53	29	0	2	67	1.06
7251389--7251489	47	2.2	44	83	10	123	33	3	3	58	1.35
7251462--7251494	17	1.9	17	93	0	57	27	9	6	57	1.53
7251731--7251765	18	1.9	18	94	0	61	25	5	5	62	1.40
7250965--7251888	464	2.0	469	89	4	1440	41	6	6	45	1.54
7270354--7270387	17	2.0	17	94	0	59	26	5	5	61	1.42
7269584--7270528	478	2.0	474	90	1	1491	42	6	6	44	1.55
7271574--7271633	32	2.0	29	81	12	68	46	0	1	51	1.10
7271801--7271831	8	3.9	8	91	0	53	64	12	0	22	1.27
7286499--7286546	15	3.1	16	82	14	57	81	2	10	6	0.95
7287355--7287784	51	8.5	51	78	8	244	36	12	13	38	1.82
7287355--7287784	102	4.2	102	77	7	394	36	12	13	38	1.82
7287353--7287778	152	2.8	151	78	7	443	36	12	12	38	1.81
7290784--7290875	22	4.2	22	70	5	60	44	4	13	38	1.63
7290870--7290938	22	3.1	22	70	0	66	53	4	4	37	1.41
7291004--7291068	22	3.0	22	82	6	78	47	3	9	40	1.51
7291017--7291210	22	9.1	22	69	13	77	46	6	9	37	1.62
7291251--7291331	41	2.0	41	85	4	110	58	3	2	35	1.29
7291250--7291341	22	4.3	22	71	21	63	56	4	4	34	1.39
7291299--7291340	21	1.9	23	85	9	61	59	0	4	35	1.19
7291359--7291489	11	12.2	11	68	11	65	48	5	6	39	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7291429--7291610	22	8.3	22	65	12	70	45	9	8	36	1.68
7291360--7291464	52	2.0	52	81	7	124	45	6	8	39	1.61
7291918--7292187	22	12.2	22	68	14	112	47	7	8	36	1.61
7291986--7292134	44	3.3	43	76	13	124	48	6	8	36	1.61
7292299--7292380	22	3.8	21	83	6	92	42	2	12	42	1.55
7292299--7292390	44	2.1	43	83	2	112	43	3	13	40	1.60
7292474--7292591	22	5.4	22	78	3	103	43	4	11	40	1.61
7292470--7292637	22	7.6	22	73	2	95	43	5	11	39	1.64
7292921--7293011	22	4.2	21	72	14	69	48	8	8	34	1.65
7292979--7293067	21	4.2	21	74	8	81	44	10	7	37	1.67
7296593--7297036	222	2.0	222	95	0	798	32	24	9	33	1.88
7297954--7297996	21	2.0	22	86	9	61	46	0	2	51	1.13
7303899--7303930	6	5.3	6	100	0	64	15	0	34	50	1.45
7307569--7307618	25	2.0	25	85	14	68	48	0	2	50	1.12
7307577--7307672	37	2.8	33	78	19	101	47	1	0	51	1.07
7307615--7307693	31	2.6	29	77	16	79	46	1	0	51	1.08
7308252--7308310	30	1.9	32	89	6	95	55	0	0	44	0.99
7308261--7308313	15	3.6	14	75	12	52	50	0	0	49	1.00
7308258--7308311	7	7.3	7	77	10	54	55	0	0	44	0.99
7309086--7309166	27	3.0	26	72	21	69	33	1	4	60	1.26
7310740--7310815	15	5.1	15	73	19	52	51	1	2	44	1.23
7310901--7310980	30	2.6	30	84	7	99	51	5	5	38	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7311317--7311354	14	2.6	15	88	12	53	0	28	0	71	0.87
7311317--7311363	10	4.7	10	84	7	51	0	31	0	68	0.90
7311321--7311355	9	3.8	9	88	7	52	0	31	0	68	0.90
7317324--7317383	26	2.3	26	91	0	93	48	5	20	26	1.70
7335252--7335282	3	10.3	3	92	0	53	29	0	3	67	1.06
7335757--7335795	21	1.9	21	89	5	62	56	12	17	12	1.67
7337036--7337100	32	2.0	32	100	0	130	35	12	9	43	1.74
7337046--7337111	32	2.2	29	84	12	82	33	12	6	48	1.65
7343522--7343588	34	2.0	34	82	11	84	71	1	8	17	1.19
7343540--7343671	40	3.3	40	80	9	137	72	0	9	17	1.14
7343621--7343675	17	3.2	16	77	12	56	78	0	7	14	0.96
7350751--7350782	16	2.0	16	100	0	64	18	18	25	37	1.94
7354371--7354414	22	2.0	22	86	0	61	43	9	11	36	1.72
7355582--7355610	9	3.3	9	95	4	51	20	0	0	79	0.74
7355581--7355610	8	3.6	8	91	8	51	23	0	0	76	0.78
7355582--7355619	17	2.3	17	90	4	60	21	0	0	78	0.74
7356812--7356901	41	2.2	42	80	6	103	44	16	13	25	1.84
7357006--7357094	41	2.2	41	95	0	160	34	12	10	42	1.76
7364941--7364967	8	3.4	8	100	0	54	0	11	0	88	0.50
7364931--7364968	19	2.0	20	84	5	51	0	15	2	81	0.80
7369806--7369844	20	2.0	20	94	0	69	23	5	10	61	1.48
7369836--7369884	15	3.4	14	82	5	53	26	0	12	61	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7371933--7371959	2	13.5	2	100	0	54	0	48	0	51	1.00
7374551--7374625	31	2.6	29	82	18	77	52	1	1	45	1.17
7375215--7375278	30	2.1	32	82	11	80	46	0	1	51	1.10
7375262--7375320	23	2.6	23	79	15	68	40	0	0	59	0.97
7375246--7375315	35	2.0	35	83	5	88	44	0	0	55	0.99
7375323--7375363	20	2.0	22	85	9	59	34	0	2	63	1.08
7377916--7377972	21	2.5	23	75	16	57	49	0	1	49	1.11
7378463--7378501	14	2.7	15	84	7	55	35	0	0	64	0.94
7382104--7382160	28	2.0	28	93	0	96	28	24	3	43	1.70
7384457--7384481	2	12.5	2	100	0	50	52	0	0	48	1.00
7386805--7386847	21	2.0	21	100	0	86	58	4	4	32	1.39
7387824--7387860	19	1.9	19	88	0	56	10	8	13	67	1.41
7388264--7388315	23	2.2	23	86	6	68	11	0	19	69	1.18
7388340--7388383	20	2.3	19	84	4	52	9	0	27	63	1.24
7388796--7388974	21	8.6	20	72	12	94	34	5	10	49	1.59
7388833--7388930	42	2.3	41	83	8	117	33	8	12	45	1.71
7389233--7389293	21	2.9	19	76	13	50	36	1	8	54	1.40
7388863--7389876	350	3.0	324	80	10	1157	34	7	10	47	1.67
7389495--7389621	21	6.1	20	78	14	125	34	8	9	47	1.67
7389498--7389648	63	2.4	63	81	9	184	36	9	9	44	1.70
7389744--7390014	21	12.7	21	66	17	62	31	9	9	49	1.66
7390204--7390255	21	2.5	20	84	9	68	28	5	13	51	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7390326--7390458	61	2.2	61	85	6	180	36	10	9	42	1.72
7390484--7390837	21	17.1	21	67	17	64	34	7	11	46	1.69
7390575--7390689	42	2.8	41	76	10	110	33	10	11	44	1.75
7390544--7390777	104	2.2	104	79	6	240	32	9	12	44	1.76
7390625--7390767	63	2.3	62	84	3	171	34	8	12	44	1.72
7390625--7390803	63	2.8	63	79	6	159	35	7	12	44	1.71
7390772--7390837	20	3.1	22	78	10	75	37	1	9	51	1.43
7390622--7390837	21	10.4	20	73	9	76	35	6	11	46	1.66
7391421--7391491	22	3.2	21	80	11	72	43	7	9	39	1.65
7391487--7391566	11	7.3	11	69	0	52	50	5	3	41	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147