genome.fa.s445.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  68  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12833015--12833129	31	3.7	31	83	4	151	29	19	23	27	1.98
12833482--12833637	52	3.0	51	85	4	179	42	7	23	26	1.80
12838318--12838374	28	2.0	28	82	0	69	52	7	3	36	1.46
12841421--12841502	30	2.7	31	80	3	103	26	18	26	28	1.98
12844009--12844033	13	1.9	13	100	0	50	32	20	8	40	1.81
12849241--12849283	2	21.5	2	100	0	86	48	0	0	51	1.00
12849383--12849431	20	2.5	20	93	0	80	57	4	0	38	1.18
12849523--12849563	11	3.2	13	80	16	50	39	2	2	56	1.26
12851129--12851162	11	3.3	11	84	16	54	26	0	0	73	0.83
12851608--12851651	2	23.0	2	84	9	56	43	0	0	56	0.99
12851629--12851671	11	3.7	12	82	14	54	27	0	4	67	1.10
12851611--12851670	6	10.2	6	84	10	61	35	0	1	63	1.05
12851771--12851797	7	3.9	7	100	0	54	25	0	0	74	0.83
12851870--12851913	20	2.2	20	84	4	63	52	0	2	45	1.13
12864944--12865820	356	2.5	355	87	2	1220	36	14	12	36	1.84
12866451--12866606	85	1.8	85	82	5	199	23	10	25	40	1.86
12872323--12872369	18	2.6	20	81	15	50	46	29	0	23	1.52
12875279--12875738	152	3.0	152	90	2	735	33	7	10	49	1.64
12879224--12879256	16	2.1	16	88	11	50	63	12	3	21	1.41
12880427--12880477	25	2.1	24	82	10	59	45	0	0	54	0.99
12880637--12880678	6	7.2	6	82	15	52	52	0	0	47	1.00
12880637--12880676	18	2.2	18	90	0	62	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12880637--12880672	11	3.2	11	88	7	54	50	0	0	50	1.00
12881112--12881171	24	2.5	24	80	0	66	56	1	5	36	1.31
12881570--12881612	16	2.5	18	81	7	54	6	6	2	83	0.88
12881576--12881657	20	4.2	19	74	10	67	14	8	1	75	1.09
12881608--12881648	22	1.9	22	90	5	66	21	7	0	70	1.11
12885708--12885747	14	2.7	15	88	7	55	35	0	2	62	1.09
12894776--12894804	15	1.9	15	100	0	58	27	0	6	65	1.18
12895074--12895103	13	2.2	14	94	5	53	83	0	3	13	0.77
12896622--12896653	3	10.7	3	93	0	55	0	37	0	62	0.95
12897306--12897361	28	2.0	28	96	0	103	46	7	16	30	1.73
12901071--12901154	28	3.1	26	75	13	71	47	4	1	46	1.31
12902163--12902234	26	2.9	23	76	15	72	27	0	4	68	1.08
12902174--12902234	26	2.4	25	84	7	88	29	0	3	67	1.07
12904171--12904217	16	3.0	16	84	6	60	14	2	6	76	1.08
12904217--12904369	4	37.8	4	73	16	77	30	0	3	65	1.11
12904305--12904368	26	2.5	26	85	7	78	32	0	3	64	1.10
12904401--12904476	34	2.3	34	84	6	93	14	5	3	76	1.11
12904416--12904476	32	1.9	32	83	12	81	11	6	4	77	1.12
12905304--12905344	16	2.4	18	80	16	59	19	0	2	78	0.87
12905370--12905449	5	15.4	5	69	25	51	13	5	3	77	1.07
12905369--12905441	6	11.7	6	71	18	51	13	5	2	78	1.04
12905368--12905452	13	6.8	12	70	22	50	14	4	3	77	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12905474--12905758	62	4.7	60	84	7	346	46	6	11	34	1.67
12905452--12905758	120	2.6	119	83	9	410	46	6	11	35	1.66
12905790--12905817	6	4.7	6	100	0	56	14	0	14	71	1.15
12916184--12916240	8	6.8	8	76	11	60	78	0	7	14	0.94
12916184--12916240	17	3.4	17	80	7	71	78	0	7	14	0.94
12916192--12916268	37	2.1	36	83	9	95	75	0	12	11	1.05
12916208--12916256	19	2.7	19	81	6	57	77	0	14	8	0.98
12916205--12916268	18	3.5	18	72	18	60	73	0	15	10	1.09
12917269--12917442	43	4.1	42	84	8	205	25	16	21	36	1.94
12917269--12917442	84	2.1	84	84	8	221	25	16	21	36	1.94
12917628--12917675	16	3.1	16	87	6	71	12	2	4	81	0.93
12917628--12917698	16	4.5	15	76	13	63	16	1	4	77	1.00
12917673--12917827	4	38.2	4	71	15	81	30	0	3	65	1.10
12917670--12917771	45	2.5	39	76	21	109	29	0	4	65	1.13
12917803--12917885	43	2.0	42	81	15	100	21	3	4	69	1.22
12918346--12918375	11	2.7	11	89	0	51	26	16	23	33	1.96
12918369--12918414	20	2.3	20	88	3	67	45	19	15	19	1.85
12918762--12918796	4	8.5	4	93	6	61	22	0	0	77	0.78
12918746--12918796	13	4.2	12	87	7	68	19	0	1	78	0.85
12918744--12918793	17	3.1	16	86	13	68	18	0	2	80	0.82
12918841--12918877	14	2.6	14	91	0	56	16	2	2	78	0.98
12918749--12918876	9	13.9	9	68	22	56	21	1	4	72	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12918818--12918891	5	14.4	5	78	13	71	16	2	2	78	0.98
12918818--12918888	11	6.8	11	78	15	71	15	2	2	78	0.98
12918894--12919195	58	5.2	58	82	6	344	45	6	11	36	1.67
12918925--12919195	58	4.6	58	85	7	350	43	6	13	36	1.69
12923585--12923624	21	1.9	21	85	10	55	10	15	0	75	1.05
12924566--12924730	34	4.9	34	81	1	143	33	13	18	35	1.89
12933796--12934936	186	6.1	186	81	6	1160	36	13	10	39	1.79
12933832--12934924	566	1.9	566	85	1	1483	36	13	10	39	1.79
12934849--12934977	63	2.1	63	85	4	172	34	8	10	47	1.68
12935502--12935554	25	2.1	25	92	0	88	20	3	28	47	1.68
12935513--12935567	25	2.2	25	90	0	83	21	3	27	47	1.68
12935520--12935573	25	2.2	25	82	0	63	22	1	27	48	1.61
12938775--12938844	35	2.0	35	82	0	86	35	17	11	35	1.85
12938915--12938973	18	3.2	18	80	9	57	62	5	6	25	1.41
12938934--12938981	18	2.6	18	87	9	62	68	4	6	20	1.28
12938951--12938984	10	3.5	10	84	8	52	73	0	5	20	1.04
12940584--12940613	11	2.6	11	94	5	51	66	0	3	30	1.07
12941334--12941374	22	1.9	21	85	14	57	80	2	2	14	0.92
12952414--12953086	47	14.0	47	83	5	758	28	13	22	35	1.92
12952414--12953086	97	7.0	95	84	5	825	28	13	22	35	1.92
12952419--12953042	242	2.6	240	88	3	880	28	13	22	35	1.92
12953231--12953270	18	2.2	18	91	8	64	70	2	5	22	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12955788--12956233	243	1.8	244	82	3	578	38	15	10	35	1.83
12959754--12959778	2	12.5	2	100	0	50	52	0	0	48	1.00
12960380--12960423	15	3.0	15	84	12	56	40	0	0	59	0.98
12960850--12960890	16	2.5	17	80	15	50	56	7	0	36	1.27
12962294--12962333	21	1.9	21	85	10	55	40	7	5	47	1.54
12965671--12965711	21	2.0	21	85	0	55	17	21	21	39	1.93
12965932--12966084	79	1.9	78	92	3	254	30	20	9	39	1.85
12978989--12979040	21	2.5	21	90	6	79	50	0	0	50	1.00
12978989--12979040	22	2.5	22	93	6	90	50	0	0	50	1.00
12985665--12985762	49	2.0	48	92	2	160	23	32	10	33	1.88
12997489--12997513	13	1.9	13	100	0	50	72	0	0	28	0.86
12999983--13000030	25	2.0	24	83	4	60	18	12	2	66	1.33
13001729--13001777	4	12.8	4	77	16	50	71	2	2	24	1.07
13001729--13001770	11	3.7	11	81	15	50	71	0	2	26	0.98
13002271--13002307	19	1.9	19	100	0	74	56	16	0	27	1.40
13002603--13002754	42	3.7	41	78	13	152	36	17	13	33	1.88
13002644--13002794	40	3.7	39	82	7	160	35	15	14	34	1.89
13002642--13002869	80	2.8	82	77	9	238	37	18	12	31	1.88
13002772--13002862	39	2.3	40	77	9	96	37	21	9	30	1.86
13003965--13004026	9	6.7	9	75	14	54	6	12	0	80	0.89
13003967--13004017	8	6.9	7	80	14	50	5	13	0	80	0.89
13004012--13004067	12	4.6	12	78	22	55	7	17	1	73	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13004315--13004375	19	3.1	19	71	19	52	13	18	0	68	1.20
13011903--13011959	2	28.5	2	85	0	78	50	7	0	42	1.29
13011909--13011951	16	2.7	16	100	0	86	51	9	0	39	1.34
13012880--13013016	21	6.4	21	74	10	73	37	5	10	47	1.60
13012881--13013020	63	2.2	64	82	8	162	36	5	10	48	1.59
13012894--13013016	42	2.9	42	76	11	99	38	4	9	47	1.58
13012942--13013027	43	2.0	43	86	4	120	38	4	8	48	1.54
13013461--13013720	22	11.8	22	73	6	177	38	3	5	52	1.41
13013559--13013700	11	12.9	11	71	7	92	37	2	5	54	1.36
13013498--13013720	88	2.5	88	80	7	238	39	3	5	51	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147