genome.fa.s445.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  101  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18551888--18551916	13	2.2	13	100	0	58	20	6	6	65	1.40
18552402--18552866	233	2.0	235	92	1	783	33	11	10	43	1.76
18552833--18553020	100	1.9	100	81	3	223	41	10	9	38	1.72
18554314--18554357	14	3.1	14	80	6	52	70	0	9	20	1.14
18554824--18554924	32	3.2	32	78	12	100	51	8	17	21	1.73
18554828--18555038	64	3.3	63	74	13	184	51	9	19	18	1.74
18554830--18555084	32	8.0	33	67	19	96	50	10	20	18	1.76
18555217--18555410	98	2.0	97	79	3	210	50	12	15	21	1.77
18555627--18555660	17	2.0	17	88	0	50	26	20	2	50	1.63
18555733--18555786	9	6.4	9	71	16	53	40	12	22	24	1.89
18555736--18555786	23	2.3	23	83	10	61	43	11	21	23	1.85
18555733--18555780	14	3.5	13	81	16	53	39	12	22	25	1.89
18556452--18556529	19	3.9	19	83	5	93	14	15	0	70	1.17
18556453--18556530	7	11.6	7	77	20	69	14	15	0	70	1.17
18560286--18560331	22	2.1	22	83	0	56	52	13	4	30	1.59
18560531--18560567	19	1.9	19	94	0	65	37	18	16	27	1.92
18560686--18560722	18	2.2	16	90	9	56	64	10	0	24	1.25
18567369--18567445	31	2.5	31	93	4	129	25	14	11	48	1.78
18574966--18575044	40	2.0	39	80	7	88	39	8	16	35	1.80
18575079--18575127	22	2.2	22	77	0	53	26	4	22	46	1.69
18575628--18575688	17	3.6	17	76	8	61	26	13	16	44	1.84
18575631--18575696	34	1.9	34	87	0	96	27	15	15	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18580084--18580131	21	2.3	20	79	13	53	43	0	16	39	1.48
18583651--18583685	16	2.2	16	89	0	52	34	14	8	42	1.76
18584003--18584434	223	1.9	223	97	0	810	32	10	16	40	1.83
18585824--18585894	36	2.0	36	91	0	115	21	11	19	47	1.80
18587411--18587471	19	3.5	17	76	12	61	55	8	3	32	1.45
18587425--18587474	19	2.5	20	87	9	66	60	8	2	30	1.37
18587411--18587471	16	3.6	16	76	18	61	55	8	3	32	1.45
18587594--18587633	14	2.7	15	84	7	55	65	2	0	32	1.06
18587601--18587641	13	3.2	13	80	19	50	68	2	0	29	1.03
18587595--18587644	14	3.6	14	76	17	52	68	2	0	30	1.01
18587637--18587703	27	2.6	27	76	9	68	76	2	11	8	1.13
18588236--18588274	16	2.4	17	86	4	53	74	20	0	5	1.01
18589283--18589351	17	4.1	17	77	7	68	31	8	17	42	1.80
18589327--18589434	17	6.4	17	73	4	83	35	14	18	31	1.91
18589293--18589437	34	4.3	34	70	11	100	33	14	17	34	1.90
18589326--18589526	69	2.9	69	82	2	235	35	17	16	30	1.93
18589464--18589522	17	3.4	17	72	4	55	40	22	11	25	1.88
18589464--18589591	52	2.5	52	79	3	134	39	17	12	31	1.87
18589345--18589557	69	3.1	69	78	3	216	35	16	16	30	1.92
18589626--18589686	18	3.4	18	75	4	61	45	9	9	34	1.70
18589637--18589687	17	2.9	17	79	2	57	47	9	9	33	1.70
18589915--18590201	45	6.3	45	77	10	219	42	10	9	37	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18589924--18590112	90	2.1	92	86	6	260	40	11	10	37	1.75
18590030--18590101	22	3.2	22	76	4	72	44	11	6	37	1.67
18590007--18590162	46	3.4	46	81	4	165	43	8	9	37	1.69
18590007--18590172	47	3.6	47	77	9	130	45	9	9	36	1.68
18591597--18591648	15	3.4	15	82	15	70	1	13	0	84	0.70
18591589--18591649	31	2.0	31	87	6	88	3	14	0	81	0.80
18591589--18591642	7	6.9	8	76	18	51	3	16	0	79	0.87
18591597--18591649	16	3.4	16	89	5	81	1	13	0	84	0.69
18591598--18591657	31	1.9	31	86	6	86	3	13	1	81	0.89
18591840--18591952	55	2.1	55	94	0	199	42	13	20	23	1.87
18597864--18597944	40	2.0	40	95	0	144	25	41	16	16	1.88
18598880--18598908	2	14.5	2	100	0	58	48	0	0	51	1.00
18599057--18599090	15	2.4	14	95	5	59	26	5	0	67	1.13
18599117--18599154	3	12.7	3	88	0	58	31	0	5	63	1.17
18600824--18600858	3	11.7	3	100	0	70	31	0	0	68	0.90
18601260--18601367	36	3.0	37	77	9	109	51	12	17	17	1.76
18609962--18610001	21	2.0	20	85	14	55	25	22	5	47	1.71
18610041--18610082	20	2.1	20	82	8	50	23	11	2	61	1.42
18610164--18610206	17	2.6	16	82	10	50	27	16	6	48	1.71
18612926--18612966	3	13.7	3	100	0	82	68	0	0	31	0.90
18612994--18613055	3	21.7	3	79	12	60	67	1	1	29	1.09
18624585--18624643	24	2.4	25	83	11	77	23	6	0	69	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18625073--18625174	53	1.9	53	81	0	123	35	12	3	48	1.60
18625220--18625275	3	20.0	3	77	17	50	30	1	0	67	1.01
18625220--18625265	11	4.3	11	80	5	58	32	2	0	65	1.05
18625220--18625274	14	3.8	14	76	21	51	30	1	0	67	1.01
18625220--18625275	15	3.5	17	79	18	59	30	1	0	67	1.01
18625221--18625262	21	2.0	21	85	0	57	30	2	0	66	1.04
18625210--18625282	33	2.1	33	87	7	101	32	2	0	64	1.08
18625303--18625352	3	16.7	3	100	0	100	32	0	0	68	0.90
18631640--18631672	12	2.8	12	95	0	57	42	0	24	33	1.55
18631640--18631687	15	3.1	15	90	6	69	41	2	22	33	1.66
18644636--18644680	16	2.7	15	86	13	54	86	4	6	2	0.76
18646185--18646219	3	11.7	3	100	0	70	34	0	0	65	0.93
18648097--18648125	14	2.1	14	100	0	58	44	27	6	20	1.77
18649166--18649249	27	3.2	27	72	14	68	16	4	4	73	1.17
18649256--18649294	17	2.2	17	86	4	51	30	2	0	66	1.05
18649646--18649780	11	11.6	11	76	9	99	5	0	13	80	0.91
18649719--18649823	13	8.6	12	79	7	81	0	2	17	79	0.91
18649719--18649784	13	5.0	13	81	15	82	0	0	18	81	0.68
18649637--18649775	17	8.2	16	72	19	72	5	1	12	80	0.94
18649646--18649823	6	30.2	6	73	12	100	4	2	14	78	1.00
18649852--18649930	37	2.2	36	82	11	90	59	12	11	16	1.61
18649877--18649955	36	2.2	37	88	6	117	53	11	17	17	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18649991--18650059	36	1.9	36	88	5	104	55	10	15	18	1.68
18650112--18650265	37	4.2	37	73	9	118	49	16	18	15	1.80
18650064--18650537	36	13.2	36	71	6	167	51	16	16	16	1.77
18650150--18650606	213	2.1	213	80	3	499	51	15	16	16	1.77
18649962--18650566	109	5.6	109	75	5	444	51	15	16	17	1.77
18650589--18650783	36	5.4	35	69	4	120	54	13	13	18	1.71
18650579--18650781	108	1.9	108	83	5	268	53	14	12	19	1.72
18650761--18650808	25	1.9	25	100	0	96	60	12	8	18	1.57
18650855--18650968	36	3.1	36	80	1	129	53	17	14	14	1.73
18651919--18651984	20	3.3	18	80	16	69	6	10	1	81	0.92
18651920--18651991	9	7.7	9	73	18	58	5	9	2	81	0.94
18670855--18670895	19	2.2	19	100	0	82	34	9	24	31	1.88
18671110--18671152	3	14.3	3	95	0	77	32	2	0	65	1.06
18675664--18675710	25	1.9	24	95	4	85	27	8	14	48	1.73
18677408--18677447	21	1.9	21	89	0	62	62	7	12	17	1.52
18678555--18678619	17	3.7	19	69	22	52	16	9	1	72	1.18
18683787--18683873	19	4.4	19	65	12	50	58	4	4	32	1.39
18683844--18683935	19	5.1	17	71	15	60	57	3	5	33	1.38
18683826--18683881	29	1.9	29	81	0	67	55	3	5	35	1.40
18684334--18684368	17	2.1	17	88	0	52	54	2	0	42	1.15
18684530--18684572	18	2.6	16	76	16	52	41	0	2	55	1.12
18686107--18686146	12	3.4	11	86	13	53	22	2	0	75	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18686282--18686325	19	2.2	20	84	11	56	22	0	6	70	1.11
18686812--18686848	15	2.5	15	91	4	58	29	2	0	67	1.04
18687964--18688011	20	2.4	20	96	0	87	29	10	12	47	1.74
18688181--18688231	3	16.7	3	91	4	84	29	1	0	68	1.00
18689479--18689537	25	2.4	25	78	16	68	8	20	1	69	1.23
18690279--18690326	24	2.0	24	91	0	78	18	39	22	18	1.92
18690716--18690784	22	3.1	22	80	2	75	23	23	18	34	1.96
18690921--18691433	32	16.2	32	72	10	165	31	13	18	37	1.89
18690840--18691313	64	7.4	63	74	10	286	30	13	18	37	1.89
18690854--18691407	32	17.3	32	70	17	144	31	13	17	37	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147