genome.fa.s445.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  26  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5476251--5476352	23	4.8	22	74	12	88	55	11	4	27	1.56
5476251--5476352	42	2.4	42	88	3	143	55	11	4	27	1.56
5476293--5476432	55	2.6	54	82	7	178	55	12	5	25	1.59
5476423--5476561	24	5.9	24	75	13	137	53	10	3	31	1.52
5476493--5476561	21	3.1	21	81	10	75	56	11	1	30	1.44
5476430--5476556	25	5.2	24	73	15	91	55	11	3	30	1.50
5477698--5478374	43	15.8	43	79	6	583	38	18	14	28	1.90
5477682--5478375	129	5.4	127	78	7	650	38	18	14	28	1.90
5482919--5483265	185	1.9	185	83	3	457	40	11	12	34	1.80
5483291--5483343	25	2.1	25	96	0	97	50	16	11	20	1.76
5491082--5491117	2	18.0	2	100	0	72	50	0	0	50	1.00
5491160--5491208	20	2.5	20	86	0	71	44	10	8	36	1.68
5491229--5491484	20	12.1	22	65	16	85	46	14	8	31	1.73
5491314--5491424	44	2.6	44	91	2	172	48	16	7	27	1.72
5491171--5491380	64	3.3	64	88	0	312	48	12	6	31	1.67
5491407--5491484	20	3.9	20	82	0	93	39	11	14	34	1.82
5491407--5491482	40	1.9	40	91	0	125	39	10	14	35	1.81
5491449--5491612	64	2.6	64	88	0	238	45	15	9	30	1.77
5491577--5491645	20	3.5	20	91	0	111	40	14	8	36	1.77
5492431--5492500	20	3.7	20	72	14	76	42	8	7	41	1.63
5492418--5492443	2	13.0	2	100	0	52	50	0	0	50	1.00
5492421--5492500	36	2.2	36	90	0	124	43	7	6	42	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5492637--5492669	12	2.6	13	90	4	50	63	0	3	33	1.10
5494204--5494231	14	2.0	14	100	0	56	50	0	0	50	1.00
5495008--5495823	236	3.5	234	76	9	791	45	12	9	32	1.74
5495261--5495694	221	2.0	220	83	3	548	47	12	8	31	1.71
5497761--5497802	19	2.2	19	83	8	50	76	4	0	19	0.96
5505959--5506003	20	2.2	20	88	4	63	44	6	6	42	1.57
5506951--5506991	22	1.9	21	85	5	55	53	9	4	31	1.55
5507327--5507358	13	2.5	13	94	0	55	53	12	0	34	1.39
5511215--5511262	17	2.5	20	80	12	57	39	0	0	60	0.97
5512179--5512218	13	3.0	13	82	7	53	30	0	0	70	0.88
5512254--5512296	20	2.3	18	84	15	52	67	2	2	27	1.15
5525641--5525702	31	2.0	31	87	0	88	40	4	14	40	1.67
5537066--5537100	18	1.9	18	88	0	52	62	0	0	37	0.95
5538678--5538718	19	2.1	20	86	13	59	24	0	7	68	1.15
5539608--5539648	18	2.3	18	91	0	64	34	2	0	63	1.08
5539946--5540015	29	2.3	31	85	4	90	51	1	1	45	1.18
5541409--5541473	33	2.0	33	87	6	96	38	4	12	44	1.63
5544047--5544088	2	21.0	2	100	0	84	50	0	0	50	1.00
5556840--5556881	22	1.9	22	85	0	57	54	9	30	4	1.53
5557279--5557348	16	4.3	16	71	15	54	41	0	1	57	1.08
5557266--5557339	34	2.3	31	81	11	87	45	0	1	52	1.09
5557834--5557890	22	2.6	22	88	0	87	45	10	7	36	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5557881--5557930	17	3.1	16	80	11	50	40	10	4	46	1.56
5558094--5558124	15	2.1	15	100	0	62	32	12	19	35	1.90
5561654--5561802	59	2.6	58	85	4	187	50	5	11	32	1.61
5561738--5561762	13	1.9	13	100	0	50	64	4	0	32	1.12
5561704--5561894	104	1.8	106	86	4	280	48	6	12	32	1.67
5561750--5561854	45	2.3	46	78	3	122	49	7	10	32	1.65
5571036--5571078	3	14.3	3	95	0	77	30	0	0	69	0.88
5574007--5574104	48	2.0	48	86	0	133	42	6	5	45	1.51
5575997--5576042	15	3.2	15	87	6	60	41	0	2	56	1.11
5578519--5578579	29	2.1	29	87	0	86	52	9	3	34	1.51
5580249--5580286	17	2.2	17	90	0	58	18	13	5	63	1.48
5580141--5580308	78	2.2	75	83	3	210	36	6	7	48	1.58
5580249--5580440	92	2.1	91	83	6	244	28	8	9	53	1.63
5581817--5582011	59	3.5	53	83	11	216	35	10	4	49	1.58
5582964--5583081	3	38.7	3	79	14	118	70	0	0	28	0.93
5583012--5583076	4	16.5	4	71	9	53	72	0	1	26	0.94
5584879--5585222	182	1.9	183	91	0	564	39	11	13	34	1.81
5585667--5586194	267	2.0	268	83	3	681	41	7	9	42	1.65
5588779--5588815	2	18.5	2	100	0	74	0	48	0	51	1.00
5592391--5592443	15	3.6	15	82	12	56	66	0	0	33	0.92
5594776--5594859	32	2.5	33	83	9	100	50	8	8	33	1.63
5595714--5595738	10	2.5	10	100	0	50	92	0	8	0	0.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5596138--5596194	22	2.6	22	79	17	66	52	3	3	40	1.35
5596382--5596423	3	14.0	3	100	0	84	66	0	0	33	0.92
5596430--5596544	22	5.2	22	68	7	72	49	5	9	35	1.58
5596482--5596545	22	2.9	22	76	0	74	48	4	10	35	1.59
5596574--5596632	22	2.7	22	81	5	66	45	3	11	38	1.58
5596662--5596742	21	3.8	22	78	4	85	51	6	7	34	1.55
5596822--5596881	22	2.7	22	77	10	59	53	11	8	26	1.65
5596845--5596940	22	4.4	22	80	2	95	46	7	8	37	1.62
5597018--5597073	11	5.1	11	76	8	51	50	1	5	42	1.35
5597014--5597073	22	2.7	21	84	5	66	50	1	5	43	1.34
5596989--5597189	44	4.7	43	70	7	120	45	5	5	42	1.53
5597043--5597261	22	10.1	22	72	5	88	46	7	6	39	1.58
5597142--5597182	11	3.7	11	83	0	55	56	2	2	39	1.26
5597110--5597189	11	7.3	11	71	0	52	50	6	5	38	1.50
5597120--5597261	44	3.2	44	73	2	124	47	7	7	36	1.61
5597208--5597276	22	3.1	22	81	8	77	49	8	4	37	1.54
5597815--5597908	21	4.5	21	77	7	93	32	7	12	46	1.70
5597811--5597908	42	2.3	42	87	3	135	32	7	13	46	1.70
5597716--5597938	104	2.1	104	78	7	229	33	8	13	45	1.73
5597815--5597944	63	2.1	62	82	7	156	33	6	12	46	1.68
5597878--5597928	21	2.4	21	90	0	75	33	1	13	50	1.53
5597855--5597975	21	5.8	21	72	13	74	34	6	12	46	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5598232--5598327	21	4.5	22	73	12	67	33	7	11	47	1.67
5598131--5598317	101	1.9	101	79	6	218	35	8	11	45	1.69
5598272--5598327	11	5.3	11	73	16	55	35	3	12	48	1.58
5598465--5598564	43	2.4	42	83	5	121	36	8	11	45	1.69
5598442--5598637	21	9.3	21	70	4	99	34	7	13	45	1.71
5598451--5598579	43	3.1	43	78	6	113	35	8	10	45	1.68
5598609--5598637	10	2.7	11	89	10	51	34	0	10	55	1.34
5598750--5598790	19	2.2	19	86	8	57	31	2	7	58	1.38
5598763--5598876	47	2.4	48	85	4	160	33	6	10	50	1.62
5598796--5598834	20	2.0	20	85	10	53	35	7	12	43	1.72
5598825--5598858	17	2.0	17	94	0	59	32	0	11	55	1.36
5598789--5598907	48	2.4	47	83	9	132	32	7	11	47	1.68
5599691--5599757	20	3.2	20	77	6	71	40	2	7	49	1.46
5600278--5600310	17	1.9	17	100	0	66	48	6	15	30	1.69
5600404--5600500	33	2.9	32	73	7	79	43	2	10	44	1.50
5600416--5600717	44	6.9	44	72	13	158	44	6	9	39	1.62
5600416--5600513	22	4.5	22	83	2	117	44	4	8	42	1.53
5600583--5600739	22	7.2	22	78	9	133	46	6	8	38	1.59
5600946--5600992	3	15.7	3	100	0	94	65	0	0	34	0.93
5601657--5601819	60	2.8	57	85	10	220	38	14	5	42	1.68
5601852--5601934	10	8.3	10	73	15	57	67	3	0	28	1.07
5601889--5601934	13	3.5	13	83	16	60	69	2	0	28	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5601832--5601933	19	5.6	19	71	18	58	68	2	0	27	1.10
5602439--5602483	10	4.1	10	79	20	54	51	8	2	37	1.46
5602439--5602483	24	1.9	23	95	4	81	51	8	2	37	1.46
5602756--5602816	17	3.5	17	82	10	79	63	1	4	29	1.24
5602760--5602854	49	1.9	48	85	10	129	60	2	6	31	1.34
5602743--5602866	49	2.6	47	79	11	128	62	2	4	30	1.29
5602878--5602934	21	2.7	19	79	15	60	73	5	3	17	1.16
5603124--5603400	42	6.5	41	79	12	251	38	19	15	26	1.92
5603161--5603400	84	2.8	84	88	3	322	37	19	15	27	1.92
5603124--5603406	126	2.2	125	83	10	342	39	18	15	26	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147