genome.fa.s445.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  17  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3755440--3755490	22	2.5	21	85	14	72	50	0	0	49	1.00
3755446--3755489	22	2.0	21	95	4	79	47	0	0	52	1.00
3755475--3755518	8	5.8	8	81	7	56	61	0	0	38	0.96
3763421--3763575	52	3.0	52	88	0	211	26	21	9	43	1.82
3763601--3763642	11	3.8	11	93	0	75	52	26	0	21	1.47
3763899--3763993	25	3.8	25	83	2	111	22	35	6	35	1.79
3763899--3763993	49	1.9	50	82	6	122	22	35	6	35	1.79
3770154--3770201	19	2.5	19	89	0	69	58	20	16	4	1.55
3784485--3784845	169	2.3	156	79	11	364	43	10	9	36	1.71
3784653--3785376	233	3.1	232	83	3	887	46	9	7	35	1.66
3785309--3785344	14	2.4	16	90	9	58	58	8	0	33	1.28
3786962--3787182	108	2.0	106	81	8	255	47	12	11	28	1.75
3787532--3787561	15	2.0	15	93	0	51	50	6	0	43	1.28
3789832--3789888	23	2.5	23	94	0	96	45	0	1	52	1.11
3790354--3790405	25	2.0	26	85	3	70	44	13	5	36	1.68
3791208--3791239	15	2.1	16	94	5	57	0	21	0	78	0.76
3791477--3791556	34	2.3	34	82	2	106	47	12	2	37	1.55
3793596--3793638	6	7.2	6	89	7	61	30	0	2	67	1.03
3793740--3793900	22	6.9	25	70	21	77	27	4	2	65	1.26
3793803--3793914	22	5.0	22	75	10	93	21	4	3	70	1.20
3793810--3793914	45	2.4	44	84	7	133	20	3	3	71	1.18
3794701--3794743	17	2.4	18	88	3	61	25	0	0	74	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3794796--3794888	30	3.0	30	65	11	80	41	4	13	39	1.65
3794794--3794979	62	3.1	61	78	9	227	43	5	12	39	1.65
3794958--3794994	18	2.0	19	89	5	58	45	5	5	43	1.49
3794882--3795060	92	2.0	92	92	3	299	45	6	9	38	1.63
3795006--3795342	119	2.8	115	84	8	379	42	5	12	39	1.66
3794973--3795338	58	6.1	57	75	12	263	43	5	11	39	1.64
3805737--3805784	1	48.0	1	80	0	51	89	0	4	6	0.58
3806750--3807001	41	6.1	40	81	3	198	25	19	20	34	1.96
3806750--3807001	82	3.0	80	80	5	245	25	19	20	34	1.96
3807016--3807064	9	5.9	8	79	15	55	85	8	4	2	0.79
3807014--3807061	15	3.3	14	80	13	53	85	8	4	2	0.80
3807014--3807064	24	2.1	24	89	7	77	86	7	3	1	0.77
3807067--3807209	43	3.3	43	89	1	207	23	14	20	41	1.89
3807228--3807261	8	4.4	8	92	3	52	88	8	0	2	0.62
3807401--3807461	7	9.3	6	83	13	68	21	1	1	75	0.98
3807401--3807461	13	4.6	13	80	15	56	21	1	1	75	0.98
3807400--3807459	20	3.0	20	83	13	79	23	1	1	73	1.01
3807408--3807670	28	9.2	27	66	26	84	25	3	3	67	1.23
3807490--3807702	4	53.2	4	70	16	63	26	3	2	67	1.22
3807579--3807743	26	7.2	25	72	19	98	27	4	3	65	1.26
3807661--3807738	21	3.8	20	77	14	79	24	6	1	67	1.21
3807671--3807747	41	1.9	41	89	7	122	22	6	2	68	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3808268--3808311	21	2.0	22	86	4	63	50	0	50	0	1.00
3808427--3808456	11	2.7	11	94	0	51	10	50	20	20	1.76
3808572--3808623	3	18.0	3	81	15	65	28	0	0	71	0.87
3808571--3808678	29	3.6	29	77	16	105	25	0	0	73	0.96
3808570--3808677	5	21.8	5	68	23	52	25	0	0	73	0.96
3808570--3808681	26	4.3	26	72	18	92	25	0	0	73	0.95
3808570--3808663	35	2.7	33	76	11	98	24	1	1	73	0.96
3808584--3808668	44	1.9	45	86	11	122	25	1	1	71	1.00
3808626--3808681	22	2.4	25	79	11	73	21	1	0	76	0.87
3808698--3808981	155	1.9	151	88	6	430	44	4	9	41	1.58
3808863--3809067	60	3.4	62	86	8	264	44	5	10	39	1.61
3810083--3810112	10	3.1	10	95	4	53	63	0	0	36	0.95
3817045--3817084	20	2.0	20	85	9	55	32	2	0	65	1.06
3820803--3820885	42	2.0	41	85	2	112	32	6	13	48	1.67
3820845--3821160	154	2.1	154	84	3	413	38	6	9	45	1.62
3822311--3822347	14	2.6	15	87	12	60	62	0	37	0	0.96
3825866--3825956	47	2.0	46	95	4	166	37	4	19	38	1.72
3825943--3825978	19	1.9	19	88	5	56	52	0	5	41	1.24
3826247--3826295	19	2.5	21	87	9	68	59	4	2	34	1.28
3826368--3826413	22	2.1	22	84	8	58	50	15	4	30	1.63
3826842--3826896	19	2.9	19	76	7	60	61	0	0	38	0.96
3837336--3837382	21	2.2	21	85	7	60	19	17	19	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3837374--3837414	21	2.0	21	90	9	66	12	31	12	43	1.79
3837936--3838520	161	3.7	159	77	5	495	41	14	9	34	1.79
3837933--3838546	320	1.9	320	79	5	688	41	14	9	34	1.78
3838278--3838611	160	2.1	160	81	6	374	43	15	8	32	1.77
3838569--3838654	43	2.0	43	97	0	163	34	19	11	33	1.88
3838611--3839216	160	3.8	157	78	6	603	39	15	9	35	1.80
3838117--3839134	523	1.9	523	79	4	1104	40	15	9	34	1.79
3839566--3839598	17	1.9	17	93	0	57	39	6	15	39	1.72
3842948--3843009	19	3.5	19	65	17	51	22	11	20	45	1.83
3843212--3843256	7	6.4	7	80	19	58	24	2	0	73	0.95
3843332--3843401	3	23.3	3	94	0	122	31	1	1	65	1.10
3850202--3850276	35	2.1	35	97	0	141	49	24	2	24	1.63
3850313--3850371	17	3.6	17	80	15	63	76	13	0	10	1.02
3850326--3850371	18	2.4	20	82	17	62	76	13	0	10	1.03
3850346--3850421	29	2.5	31	82	8	93	67	18	1	13	1.30
3850410--3850463	25	2.2	25	86	6	74	70	9	1	18	1.23
3850237--3850707	235	2.0	236	94	2	840	62	17	1	18	1.42
3850548--3850596	15	3.2	15	85	2	62	73	14	0	12	1.10
3851749--3851790	18	2.3	19	83	4	59	64	4	7	23	1.38
3851804--3851860	9	6.3	9	72	8	53	64	3	1	29	1.20
3851988--3852138	8	17.5	8	66	14	61	68	4	4	22	1.27
3852034--3852137	26	3.9	26	75	8	93	70	1	5	22	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3851988--3852071	17	5.0	16	77	17	64	69	5	2	22	1.22
3852187--3852270	35	2.3	36	81	6	98	73	1	8	16	1.13
3852486--3852567	38	2.1	39	82	6	96	24	2	9	63	1.37
3852486--3852573	39	2.2	40	80	9	92	27	2	9	61	1.38
3852708--3852746	14	2.6	15	88	8	53	20	2	0	76	0.90
3852708--3852747	15	2.7	15	81	14	55	20	2	0	77	0.88
3852708--3852755	15	3.2	15	79	8	53	18	2	0	79	0.84
3855208--3855233	12	2.2	12	100	0	52	38	0	0	61	0.96
3855203--3855251	20	2.4	21	83	13	66	34	0	0	65	0.93
3855948--3856001	23	2.4	24	85	14	71	20	0	5	74	1.02
3861460--3861504	22	2.0	22	82	0	54	73	0	22	4	1.01
3863313--3863614	81	3.7	79	78	4	300	22	14	22	39	1.91
3863282--3863657	121	3.0	120	76	9	303	23	13	21	41	1.89
3863292--3863634	41	8.4	41	78	7	297	22	13	20	42	1.88
3863882--3864073	4	47.8	4	66	17	78	24	4	2	69	1.17
3863941--3864039	33	2.9	32	75	8	90	21	6	3	69	1.24
3863876--3864073	26	7.8	26	67	19	98	24	4	2	69	1.16
3863985--3864067	17	4.8	17	73	10	62	25	4	2	67	1.23
3863901--3864074	21	8.0	21	71	14	77	25	4	1	68	1.16
3863888--3864069	43	4.2	43	75	12	156	24	4	2	68	1.19
3864413--3864449	19	1.9	19	88	0	56	27	2	16	54	1.56
3870166--3870215	25	2.0	26	84	4	66	66	0	0	34	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3888660--3888765	52	2.0	52	81	0	122	32	29	6	32	1.83
3894917--3895087	93	1.8	93	82	6	222	40	9	7	42	1.64
3894917--3895098	92	2.0	92	81	6	217	42	9	7	41	1.64
3898957--3899002	23	2.0	22	87	4	65	56	4	0	39	1.19
3899415--3899461	23	2.0	23	84	8	60	70	2	10	17	1.26
3899467--3899493	3	9.0	3	100	0	54	66	0	0	33	0.92
3901811--3901852	16	2.7	16	85	14	61	50	2	0	47	1.14
3904745--3904787	18	2.4	17	81	11	50	44	34	2	18	1.63
3904829--3904942	19	6.0	19	69	16	67	45	38	1	14	1.55
3904834--3904961	7	19.2	6	72	21	62	46	36	1	14	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147