genome.fa.s445.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  60  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11480512--11480584	36	2.0	37	82	12	89	54	0	1	43	1.08
11494132--11494159	2	14.0	2	100	0	56	50	0	0	50	1.00
11494188--11494251	31	2.1	31	96	0	119	17	15	10	56	1.67
11500996--11501041	25	2.0	25	87	12	71	30	0	2	67	1.03
11500995--11501038	12	3.9	11	82	11	54	29	0	2	68	1.02
11500996--11501048	22	2.4	23	84	12	67	33	0	1	64	1.05
11506842--11507164	105	3.1	105	81	5	366	27	12	29	30	1.92
11507087--11507242	78	2.0	78	92	2	260	28	12	30	28	1.93
11514736--11515139	221	1.8	221	85	1	567	47	20	10	21	1.80
11514469--11515640	470	2.6	467	84	6	1485	46	20	10	22	1.80
11514953--11515405	249	1.8	249	82	3	590	46	21	9	22	1.81
11522883--11522922	2	20.0	2	94	0	71	52	47	0	0	1.00
11531663--11531729	33	2.0	33	85	0	89	55	1	0	43	1.09
11532997--11533048	22	2.4	22	83	6	61	59	3	5	30	1.39
11534280--11534336	30	1.9	30	85	0	78	45	0	1	52	1.11
11534309--11534363	23	2.5	22	91	8	87	50	0	0	49	1.00
11535715--11535756	21	2.0	22	86	13	61	38	9	0	52	1.34
11541877--11541955	40	2.0	39	81	16	92	53	10	2	34	1.48
11543244--11543305	31	1.9	34	83	9	85	43	8	9	38	1.67
11544172--11544360	97	2.0	96	80	9	215	46	6	5	41	1.52
11546230--11546255	12	2.2	12	100	0	52	34	0	0	65	0.93
11546246--11546300	24	2.3	24	90	6	85	34	3	3	58	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11546495--11546532	18	2.1	18	95	0	67	26	13	10	50	1.73
11547344--11547450	17	6.0	17	72	14	56	65	3	3	27	1.27
11547343--11547428	28	3.2	26	79	12	86	66	4	4	24	1.30
11547651--11547708	27	2.1	28	87	3	82	31	3	5	60	1.35
11547679--11547727	10	4.8	10	76	2	53	38	2	2	57	1.22
11547679--11547727	21	2.4	20	86	3	62	38	2	2	57	1.22
11547834--11547908	27	2.7	27	82	10	80	29	2	2	65	1.20
11555070--11555107	2	19.0	2	100	0	76	50	0	0	50	1.00
11556010--11556088	15	4.9	15	75	13	61	24	2	2	70	1.11
11556001--11556071	22	3.2	23	86	11	96	21	1	4	73	1.08
11556015--11556064	19	2.6	19	78	9	57	22	2	4	72	1.12
11556011--11556088	7	11.0	7	74	14	63	24	2	2	70	1.12
11556152--11556204	12	4.7	12	73	19	51	35	3	1	58	1.27
11556156--11556242	21	4.2	22	77	11	103	31	4	4	59	1.38
11556168--11556265	41	2.3	41	84	8	115	29	6	4	60	1.40
11556168--11556276	44	2.5	41	81	10	103	29	6	3	60	1.39
11557170--11557816	58	10.9	58	74	10	531	45	6	12	35	1.68
11557192--11557814	59	10.5	58	73	11	351	44	6	13	35	1.69
11557255--11557814	59	9.5	57	73	14	396	43	6	13	36	1.70
11568208--11568248	9	4.7	9	84	6	57	78	0	14	7	0.96
11568209--11568250	17	2.5	16	85	11	57	73	0	16	9	1.08
11569192--11569237	22	2.1	22	83	0	56	32	21	8	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11569237--11569493	42	6.1	42	85	3	313	26	14	19	38	1.91
11569237--11569469	126	1.9	125	88	0	358	27	13	18	40	1.88
11569817--11569901	15	5.9	15	76	15	74	24	2	1	71	1.04
11569893--11569917	13	1.9	13	100	0	50	40	4	0	56	1.18
11569987--11570081	21	4.5	21	74	11	70	28	4	4	63	1.32
11569987--11570094	42	2.5	41	82	8	110	27	4	3	63	1.31
11570945--11570979	12	2.9	12	84	16	54	14	0	0	85	0.59
11570942--11570980	17	2.4	17	87	12	55	15	0	0	84	0.62
11570945--11570981	13	3.0	13	88	11	60	16	0	0	83	0.64
11571004--11571338	62	5.5	61	81	11	332	44	6	13	35	1.69
11571069--11571461	119	3.3	119	84	7	487	44	7	12	35	1.71
11573730--11573773	23	1.9	23	85	0	61	20	4	2	72	1.13
11574956--11575003	20	2.4	20	75	0	51	56	4	4	35	1.38
11575054--11575088	18	2.0	18	88	5	54	11	5	11	71	1.30
11575279--11575325	18	2.7	17	80	6	58	34	0	4	61	1.15
11575318--11575386	8	7.8	9	72	13	54	36	2	1	59	1.21
11575318--11575421	36	2.8	36	80	12	97	38	1	1	57	1.21
11575339--11575397	27	2.2	25	82	11	73	38	1	0	59	1.08
11575346--11575405	20	3.2	19	75	20	63	41	1	0	56	1.09
11575336--11575421	38	2.4	35	85	14	113	38	1	1	59	1.13
11580569--11580947	207	1.8	208	87	4	570	36	6	11	46	1.65
11587287--11587342	27	2.1	27	86	6	78	14	7	10	67	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11588392--11588450	20	3.0	20	94	0	100	18	30	28	22	1.97
11588490--11588514	13	1.9	13	100	0	50	20	0	0	80	0.72
11588494--11588559	22	3.2	20	76	16	57	19	4	4	71	1.22
11588744--11588776	11	2.8	12	86	9	50	18	0	0	81	0.68
11589089--11589150	31	2.0	31	90	6	99	20	25	24	29	1.99
11589191--11589218	11	2.5	11	100	0	56	14	46	21	17	1.84
11589588--11589648	25	2.4	25	91	0	95	9	0	4	85	0.74
11589586--11589648	14	4.8	14	83	13	80	9	0	4	85	0.72
11589602--11589645	11	3.7	11	90	9	61	13	0	6	79	0.92
11589613--11589680	29	2.4	29	87	7	95	13	1	7	77	1.03
11589658--11589973	159	2.0	158	96	0	587	30	13	16	39	1.87
11593250--11593282	1	33.0	1	100	0	66	100	0	0	0	0.00
11593682--11593717	10	3.8	9	89	10	54	83	0	13	2	0.76
11593657--11593725	19	3.7	20	78	16	76	75	0	17	7	1.02
11594950--11595443	42	12.0	41	90	6	718	22	17	22	37	1.94
11594950--11595443	83	6.0	82	91	4	750	22	17	22	37	1.94
11595490--11595552	9	7.6	9	79	16	66	82	7	0	9	0.84
11595451--11595545	1	95.0	1	79	0	91	88	6	0	5	0.63
11595450--11595552	16	6.4	16	82	9	120	86	7	0	5	0.71
11595661--11595719	20	3.0	20	94	0	100	18	30	28	22	1.97
11595759--11595783	13	1.9	13	100	0	50	20	0	0	80	0.72
11595763--11595828	22	3.2	20	76	16	57	19	4	4	71	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11596015--11596047	11	2.8	12	86	9	50	18	0	0	81	0.68
11596361--11596433	31	2.4	31	90	4	112	21	26	24	27	2.00
11596775--11596803	5	5.8	5	100	0	58	20	41	37	0	1.53
11596918--11596944	10	2.7	10	100	0	54	14	0	7	77	0.97
11596884--11596924	1	41.0	1	92	0	55	4	0	2	92	0.44
11596884--11596934	15	3.5	15	91	2	77	7	0	3	88	0.63
11596889--11596954	25	2.7	24	88	4	105	10	0	4	84	0.75
11596913--11596980	31	2.3	30	87	10	95	11	1	7	79	0.99
11596960--11597276	159	2.0	159	97	0	598	29	13	16	40	1.87
11597692--11597792	13	7.2	13	74	19	80	78	2	0	17	0.94
11597714--11597785	17	4.2	17	78	15	67	76	1	1	20	0.94
11597704--11597787	24	3.6	22	77	16	80	78	1	1	19	0.88
11597704--11597791	41	2.2	41	86	11	121	78	1	1	19	0.88
11597692--11597793	21	4.7	23	69	24	71	77	2	0	18	0.95
11598338--11598378	21	1.9	22	85	5	57	29	19	0	51	1.47
11598611--11598671	3	20.3	3	90	6	97	65	1	0	32	1.02
11599183--11600292	357	3.1	353	77	8	1077	44	13	22	18	1.85
11599008--11600311	477	2.7	474	79	5	1328	44	13	22	18	1.85
11598889--11600311	120	11.9	119	76	5	889	44	13	22	19	1.85
11600240--11600348	56	1.9	56	87	3	157	40	14	24	20	1.90
11600242--11600367	56	2.2	56	83	5	148	41	15	23	20	1.90
11600133--11600467	175	1.9	176	82	4	417	42	12	23	20	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11600297--11600707	120	3.4	120	77	5	316	43	13	23	20	1.87
11601751--11601832	42	2.0	42	85	0	110	21	15	15	46	1.84
11605941--11605979	20	2.0	20	90	10	62	41	7	5	46	1.55
11606419--11606464	3	16.0	3	86	8	69	65	2	0	32	1.05
11606928--11606959	17	1.9	17	93	6	57	21	6	0	71	1.07
11607665--11607717	26	2.0	26	81	3	61	30	1	18	49	1.59
11608125--11608157	12	2.8	12	100	0	66	69	6	6	18	1.30
11608468--11608501	18	1.9	18	94	5	61	41	0	0	58	0.98
11608494--11608559	8	7.4	9	73	17	50	33	3	1	62	1.20
11608492--11608531	17	2.2	19	86	8	57	30	2	2	65	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147