genome.fa.s445.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  28  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5749626--5749674	25	1.9	26	91	4	82	46	2	10	40	1.49
5753071--5753137	6	11.2	6	91	0	107	20	0	49	29	1.50
5753070--5753137	18	3.8	18	96	0	118	22	0	48	29	1.51
5753480--5753604	18	6.9	18	72	13	105	32	36	4	26	1.78
5753484--5753526	21	2.0	21	95	0	77	25	44	2	27	1.66
5754543--5754581	18	2.2	18	85	0	51	61	5	28	5	1.39
5766128--5766168	22	1.9	22	90	5	66	31	0	0	68	0.90
5767348--5767383	16	2.2	16	95	5	63	11	0	5	83	0.80
5768459--5768512	4	14.2	4	77	11	60	72	1	0	25	0.95
5768467--5768509	15	2.9	15	80	13	54	72	2	0	25	0.97
5768661--5768711	21	2.4	21	80	0	57	37	15	5	41	1.72
5768698--5768793	21	4.7	20	77	12	70	37	2	11	48	1.51
5769114--5769207	22	4.3	21	73	15	66	38	9	8	43	1.68
5769868--5769906	17	2.2	18	86	4	53	35	28	2	33	1.71
5770102--5770171	22	3.2	22	73	16	65	34	5	5	54	1.48
5770100--5770192	21	4.3	20	76	9	69	35	7	7	49	1.59
5772124--5772166	20	2.1	21	91	4	70	39	6	4	48	1.51
5776912--5776945	13	2.6	13	95	0	59	44	5	0	50	1.26
5777554--5777597	19	2.3	19	88	4	61	29	0	2	68	1.02
5777619--5777672	12	4.5	12	78	19	51	61	1	0	37	1.07
5778141--5778310	11	15.7	11	68	8	62	41	7	4	47	1.52
5778115--5778169	26	2.1	26	82	0	65	40	5	3	50	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5778189--5778297	22	5.0	22	74	4	76	39	9	5	45	1.59
5778191--5778503	44	7.2	43	75	5	171	37	8	5	47	1.59
5778222--5778515	22	13.5	22	71	5	139	37	8	6	48	1.58
5778396--5778522	43	3.0	43	89	2	175	36	7	7	48	1.60
5778647--5778707	22	2.8	22	89	0	95	40	6	3	49	1.45
5778714--5778776	19	3.2	18	75	18	54	28	4	1	65	1.22
5778791--5778839	22	2.2	22	85	7	64	40	10	2	46	1.49
5780028--5780069	15	2.8	15	88	0	66	28	0	14	57	1.38
5783875--5783908	14	2.4	14	85	0	50	55	0	0	44	0.99
5784464--5784513	19	2.8	19	80	14	54	52	0	0	48	1.00
5784491--5784548	11	5.2	12	72	19	54	56	0	0	43	0.99
5784492--5784549	22	2.6	22	84	13	82	56	0	0	43	0.99
5785423--5785466	19	2.3	19	84	7	54	34	2	2	61	1.21
5785434--5785470	18	2.1	18	90	10	58	35	0	0	64	0.94
5785821--5785886	34	2.0	32	82	8	80	48	9	6	36	1.60
5785973--5786009	18	2.1	18	94	0	65	59	0	0	40	0.97
5786129--5786181	26	2.0	26	85	0	70	45	7	0	47	1.31
5801083--5801126	22	2.0	22	82	8	54	63	2	4	29	1.26
5802502--5802611	55	2.0	55	98	0	211	30	14	19	36	1.91
5805412--5805460	21	2.3	21	89	0	71	36	6	0	57	1.24
5805433--5805472	21	1.9	21	84	0	53	35	7	2	55	1.42
5811189--5811236	20	2.4	19	73	10	51	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5811322--5811370	17	3.1	15	85	14	55	26	0	0	73	0.83
5811327--5811367	9	4.9	9	85	11	52	26	0	0	73	0.84
5814291--5814329	19	2.1	18	86	13	53	53	0	2	43	1.14
5817514--5817576	15	4.1	16	67	19	53	46	0	0	53	1.00
5817505--5817570	30	2.2	30	83	5	80	46	0	1	51	1.10
5817515--5817574	31	1.9	32	90	6	97	45	0	0	55	0.99
5817527--5817595	30	2.3	29	76	13	77	43	1	2	52	1.25
5832149--5832417	134	2.0	134	90	1	423	40	24	10	24	1.86
5835849--5835891	22	1.9	22	85	4	59	37	6	18	37	1.78
5839724--5839766	6	7.3	6	84	5	52	53	0	0	46	1.00
5839873--5839936	22	2.6	25	71	16	62	60	0	0	39	0.97
5839880--5839946	19	3.3	20	77	10	66	58	0	0	41	0.98
5840480--5840944	242	1.9	243	87	3	691	32	14	19	33	1.92
5845798--5845828	16	1.9	16	93	0	53	29	0	16	54	1.42
5845726--5845858	68	2.0	68	93	0	230	38	3	15	43	1.62
5847841--5848132	8	37.6	8	75	10	207	20	2	28	49	1.60
5847842--5847913	15	4.7	15	82	1	72	15	1	29	54	1.50
5847841--5848141	31	9.7	31	76	11	217	20	1	27	49	1.60
5847841--5848141	39	7.7	39	73	12	174	20	1	27	49	1.60
5847948--5848125	23	7.6	22	73	14	110	23	1	25	50	1.57
5850307--5850353	26	1.9	26	83	12	64	14	4	8	72	1.24
5850378--5850410	10	3.5	10	84	16	52	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5852964--5852998	2	17.5	2	93	0	61	51	0	0	48	1.00
5856746--5856792	22	2.1	22	84	4	58	61	0	0	38	0.96
5876297--5876354	18	3.2	18	78	9	55	48	1	0	50	1.11
5876332--5876462	15	9.0	15	77	15	125	54	2	0	41	1.18
5876309--5876459	18	8.7	18	70	20	81	53	1	0	43	1.16
5876321--5876462	72	2.0	73	83	6	182	54	2	0	42	1.17
5876350--5876462	44	2.7	41	80	14	117	54	1	0	42	1.16
5876350--5876464	10	11.5	11	65	25	51	54	1	0	42	1.16
5876326--5876479	72	2.1	71	81	9	170	55	3	1	39	1.24
5876498--5876545	19	2.5	19	86	6	62	45	2	0	52	1.12
5876568--5876623	26	2.2	26	87	6	78	50	1	0	48	1.11
5876575--5876635	26	2.2	26	82	8	68	47	1	1	49	1.21
5876738--5876778	14	2.8	14	88	7	55	34	4	9	51	1.56
5880855--5880889	18	1.9	18	100	0	70	54	0	0	45	0.99
5881197--5881231	18	1.9	18	88	0	52	37	0	2	60	1.12
5884320--5884347	13	2.2	13	100	0	56	0	14	35	50	1.43
5885422--5885715	146	2.0	147	93	0	500	47	7	15	29	1.73
5889120--5889160	13	3.2	13	82	0	55	60	0	0	39	0.96
5890285--5890341	30	1.9	30	85	7	80	43	3	1	50	1.29
5890285--5890370	30	2.9	28	78	14	75	41	4	2	51	1.35
5899171--5899211	17	2.3	19	79	8	50	29	0	4	65	1.13
5901019--5901050	16	2.0	16	100	0	64	43	6	6	43	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5901097--5901163	14	4.7	15	72	10	52	61	0	0	38	0.96
5901525--5901565	17	2.5	17	80	11	50	78	4	7	9	1.10
5901769--5901809	11	4.0	11	84	15	52	65	0	0	34	0.93
5907722--5907753	10	3.2	10	95	0	55	21	0	0	78	0.76
5912227--5912251	13	1.9	13	100	0	50	40	0	8	52	1.31
5912349--5912389	20	2.0	21	85	4	57	51	0	0	48	1.00
5912366--5912406	12	3.2	12	83	10	55	65	0	0	34	0.93
5913248--5913286	13	3.1	13	85	7	53	61	0	0	38	0.96
5913368--5913401	14	2.3	15	90	5	52	44	0	0	55	0.99
5916831--5916878	24	2.0	25	87	4	71	27	18	2	52	1.57
5919554--5919595	18	2.3	19	87	4	59	30	0	2	66	1.04
5919633--5919672	13	3.1	13	81	0	53	57	0	0	42	0.98
5922417--5922455	2	20.0	2	94	5	71	51	0	0	48	1.00
5922737--5922791	28	2.0	28	82	7	67	36	3	0	60	1.15
5925652--5925814	84	1.9	84	92	0	272	43	19	15	21	1.88
5930802--5930846	21	2.0	22	83	8	56	37	6	2	53	1.40
5931206--5931273	35	1.9	35	82	11	86	64	4	0	30	1.13
5931290--5931342	24	2.2	24	96	0	97	50	13	3	32	1.59
5932923--5932955	12	2.8	12	86	4	50	63	0	3	33	1.10
5933206--5933259	26	2.1	26	86	6	74	42	5	7	44	1.55
5933188--5933259	25	2.8	24	83	8	72	43	5	9	41	1.61
5937861--5937914	20	2.6	21	85	11	67	75	0	14	9	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5937854--5937913	27	2.3	25	78	10	66	80	0	13	6	0.91
5939168--5939226	20	2.9	20	72	7	57	35	10	16	37	1.83
5939189--5939306	58	2.0	59	90	4	186	35	10	18	35	1.85
5942390--5942562	86	2.0	86	95	1	310	36	9	9	44	1.70
5944515--5944548	6	5.7	6	89	0	50	20	11	47	20	1.81
5946782--5946819	18	2.1	18	90	0	58	31	0	2	65	1.06
5947070--5947113	18	2.3	20	88	11	67	68	0	0	31	0.90
5948053--5948194	56	2.4	55	76	19	128	59	0	2	38	1.15
5951241--5951279	19	2.1	18	85	4	51	33	10	10	46	1.72
5952907--5952951	20	2.1	23	84	12	60	40	0	2	57	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147