Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  55  of  147  ( 17591 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10636540--10636599
13
5.2
13
75
17
53
65
0
0
35
0.93
10641772--10641822
19
2.8
18
77
19
52
39
0
1
58
1.09
10642560--10642705
74
2.0
74
81
8
172
37
8
9
43
1.69
10642599--10642664
21
3.2
21
70
10
55
37
9
12
40
1.74
10642701--10642781
34
2.3
36
78
6
94
46
9
2
40
1.50
10645455--10645672
121
1.8
121
92
2
375
43
16
8
32
1.78
10645576--10646177
144
4.3
139
87
5
799
41
17
9
31
1.82
10645576--10646145
280
2.0
274
86
7
790
41
17
10
31
1.82
10653287--10653341
29
1.9
28
85
3
74
34
0
0
65
0.93
10654474--10654518
13
3.5
13
84
0
63
28
2
0
68
1.01
10654462--10654506
13
3.1
15
78
21
51
26
4
2
66
1.22
10659482--10659525
22
2.0
22
87
12
65
36
6
0
56
1.26
10659451--10659524
31
2.4
31
84
4
96
37
5
0
56
1.22
10662440--10662592
75
2.0
75
98
0
297
46
15
16
21
1.84
10664547--10664592
20
2.4
19
80
16
51
45
0
2
52
1.13
10671367--10671408
20
2.0
21
82
13
52
42
0
4
52
1.22
10671462--10671497
13
2.8
13
91
0
54
25
0
0
75
0.81
10671653--10671708
29
2.0
29
82
10
71
62
14
1
21
1.40
10672415--10672463
20
2.4
20
83
10
55
40
0
0
59
0.98
10675464--10675503
16
2.5
17
88
8
57
35
0
2
62
1.09
10676618--10676658
3
13.3
3
84
5
55
34
31
0
34
1.58
10678450--10678487
3
13.0
3
84
15
53
63
0
0
36
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10678450--10678487
19
2.0
19
90
10
60
63
0
0
36
0.95
10689788--10689832
22
2.1
22
87
4
65
55
2
0
42
1.12
10689787--10689833
21
2.2
20
82
10
58
53
2
0
44
1.12
10690209--10690265
13
4.5
13
78
6
64
22
3
0
73
0.98
10690208--10690265
25
2.3
25
82
8
82
22
3
0
74
0.97
10690639--10690742
29
3.6
29
76
7
104
54
2
3
38
1.33
10690691--10690749
29
2.1
28
87
9
84
55
0
1
42
1.09
10691675--10691750
30
2.5
31
75
10
77
53
0
1
44
1.08
10694094--10694135
19
2.2
19
83
8
50
40
0
0
59
0.97
10703898--10703948
16
3.3
15
73
15
50
52
0
0
47
1.00
10705787--10705839
13
4.0
13
82
2
70
50
0
1
47
1.12
10705787--10705839
7
8.0
7
77
12
58
50
0
1
47
1.12
10705935--10705987
22
2.5
21
82
11
56
52
1
0
45
1.11
10709690--10709779
45
2.0
45
82
4
110
14
23
25
36
1.93
10717799--10717838
18
2.2
18
90
0
62
75
5
0
20
0.99
10728288--10728363
4
19.0
4
81
12
52
0
2
19
77
0.88
10728309--10728372
5
13.6
5
85
14
68
0
0
14
85
0.59
10728313--10728373
1
61.0
1
73
0
50
0
0
13
86
0.56
10728289--10728373
17
5.1
16
76
17
75
0
2
16
81
0.80
10728717--10728781
2
32.5
2
84
0
85
44
3
4
47
1.39
10731326--10731605
100
2.7
102
77
9
295
37
8
10
43
1.70
10732434--10732492
17
3.3
18
77
13
52
71
6
8
13
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10734434--10734461
7
4.0
7
100
0
56
71
0
0
28
0.86
10735683--10735750
30
2.3
29
80
14
86
55
0
0
44
0.99
10735683--10735757
28
2.6
29
85
12
100
54
0
0
45
0.99
10744122--10744159
14
2.7
15
84
8
53
55
0
0
44
0.99
10744755--10744788
18
1.9
18
88
5
52
58
0
5
35
1.22
10745600--10745967
203
1.8
199
81
5
463
41
8
3
45
1.53
10747120--10747208
44
2.0
44
91
2
144
39
13
12
34
1.82
10748280--10748308
4
7.5
4
92
7
51
20
0
0
79
0.74
10748284--10748335
18
3.3
15
75
17
52
25
0
3
71
1.03
10748343--10748394
18
2.9
18
75
13
54
13
5
1
78
1.01
10748328--10748394
15
4.4
14
73
19
55
13
7
1
77
1.04
10748376--10748417
22
1.9
22
85
9
59
14
14
2
69
1.30
10748430--10749063
57
10.8
58
85
6
778
44
8
12
34
1.72
10748430--10749063
179
3.6
173
86
6
880
44
8
12
34
1.72
10748432--10749063
238
2.7
233
91
2
1021
44
7
12
34
1.72
10753887--10754372
256
1.9
254
84
5
658
38
12
8
40
1.73
10756397--10756422
2
13.0
2
100
0
52
50
0
0
50
1.00
10756556--10756593
14
2.7
15
84
8
53
55
0
0
44
0.99
10758696--10758728
10
3.3
10
87
12
50
12
9
0
78
0.95
10773975--10774051
3
25.7
3
87
7
104
32
1
1
64
1.09
10776808--10776985
57
3.0
58
67
16
141
35
9
5
49
1.59
10776982--10777181
68
2.9
69
81
10
239
39
12
3
45
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10778119--10778218
27
3.8
27
74
18
95
63
1
3
33
1.17
10778105--10778218
50
2.3
50
82
10
137
64
0
2
31
1.13
10778417--10778665
45
5.6
44
79
5
261
41
20
12
25
1.87
10778976--10779010
16
2.2
16
89
0
52
40
17
20
22
1.92
10783240--10783407
83
2.0
83
86
4
232
33
13
5
47
1.66
10783411--10783454
16
2.6
17
85
7
54
54
0
2
43
1.12
10784381--10784481
27
3.9
25
74
20
91
62
0
3
32
1.20
10784364--10784481
51
2.3
50
81
10
123
62
0
5
31
1.22
10785570--10785599
3
10.3
3
92
7
53
30
0
0
70
0.88
10785625--10785690
10
7.0
9
76
13
62
0
22
0
77
0.77
10785622--10785682
14
4.8
13
77
16
58
0
19
0
80
0.72
10785626--10785690
4
17.0
4
79
17
50
0
23
0
76
0.78
10786657--10786703
21
2.2
21
82
14
53
25
2
2
70
1.10
10796702--10796767
15
4.2
14
79
16
60
21
1
4
72
1.10
10796706--10796768
25
2.5
25
79
7
74
22
1
4
71
1.13
10796782--10796880
4
23.5
4
71
19
51
27
0
4
68
1.07
10797468--10797516
19
2.5
20
80
3
55
34
22
20
22
1.97
10797889--10797954
17
4.2
16
74
20
68
15
6
0
78
0.93
10797877--10797966
6
17.6
5
70
22
55
17
6
0
75
1.01
10797889--10797963
23
3.3
23
77
15
84
16
8
0
76
1.02
10797836--10797963
21
5.6
22
70
19
84
20
4
3
71
1.17
10797895--10797980
40
2.2
40
81
8
104
15
9
1
74
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10797914--10797980
34
2.0
33
82
8
82
14
8
1
74
1.13
10797992--10798265
57
4.7
59
92
5
416
43
7
14
35
1.73
10802587--10802881
41
7.1
41
88
2
430
24
17
22
35
1.95
10802888--10802941
9
6.6
8
80
14
58
85
11
0
3
0.73
10803095--10803159
12
4.6
15
76
23
54
18
1
3
76
0.99
10803109--10803167
6
9.7
6
77
17
50
20
0
1
77
0.85
10803095--10803138
22
2.0
22
86
0
61
15
2
2
79
0.93
10803107--10803278
16
10.6
16
69
22
69
27
0
3
68
1.10
10804234--10804382
10
14.4
10
66
12
50
18
3
3
74
1.10
10804256--10804310
21
2.6
21
88
2
74
27
0
5
67
1.12
10804256--10804294
4
9.5
4
88
5
60
23
0
2
74
0.94
10804256--10804381
47
2.7
44
77
17
119
20
3
3
72
1.15
10804314--10804382
15
4.4
15
75
14
68
13
7
1
78
1.02
10804364--10804405
22
1.9
22
85
9
59
14
11
2
71
1.24
10804418--10804635
61
3.7
58
87
6
323
44
5
14
35
1.69
10804420--10804635
119
1.8
118
93
1
378
44
5
14
35
1.68
10804562--10804709
74
2.0
74
93
5
257
41
6
14
37
1.72
10804619--10804650
15
2.1
15
100
0
64
37
6
12
43
1.68
10804421--10804635
57
3.7
57
85
7
261
44
5
14
35
1.69
10807478--10807719
50
4.9
49
81
4
281
28
11
22
37
1.88
10807476--10807705
99
2.3
98
82
2
282
30
11
21
36
1.89
10807887--10807937
22
2.3
22
90
6
77
0
17
0
82
0.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10807886--10807938
26
2.1
24
89
6
79
0
16
0
83
0.66
10808077--10808120
23
1.9
23
90
0
70
40
15
18
25
1.90
10808162--10808187
11
2.4
11
100
0
52
92
0
0
7
0.39
10808835--10808903
21
3.2
20
70
18
50
26
2
2
68
1.18
10808954--10808987
13
2.5
14
85
9
52
67
0
2
29
1.05
10809232--10809278
18
2.7
18
83
9
53
63
0
4
31
1.13
10810070--10810097
3
9.3
3
100
0
56
32
0
0
67
0.91
10811163--10811224
3
20.7
3
100
0
124
32
0
0
67
0.91
10814128--10814167
15
2.8
13
82
17
53
37
2
0
60
1.11
10814111--10814276
64
2.6
64
84
8
230
39
9
3
48
1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147