genome.fa.s445.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  130  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23379663--23379728	34	2.1	31	81	15	75	30	0	0	69	0.88
23379932--23379975	17	2.5	18	82	14	56	81	0	0	18	0.68
23379948--23379973	10	2.6	10	100	0	52	92	0	0	7	0.39
23381463--23381541	37	2.2	37	84	6	99	53	12	16	17	1.73
23381463--23381575	36	3.1	36	83	5	122	52	9	16	21	1.72
23381479--23381575	36	2.6	37	85	1	124	51	9	16	22	1.73
23381883--23381950	22	3.1	22	79	8	75	36	13	16	33	1.87
23381957--23382264	127	2.4	127	79	3	296	39	12	13	34	1.83
23382405--23382442	9	4.3	9	86	3	51	5	2	2	89	0.64
23382520--23382567	18	2.7	18	93	0	78	43	12	18	25	1.85
23382691--23382717	6	4.5	6	100	0	54	44	18	18	18	1.87
23382763--23382945	86	2.1	86	79	5	192	32	14	17	35	1.90
23385816--23385868	23	2.3	22	80	6	61	56	11	1	30	1.45
23389634--23389677	22	2.0	22	86	4	63	77	2	6	13	1.07
23389858--23389908	15	3.5	15	76	5	52	45	0	0	54	0.99
23393692--23393722	3	10.3	3	100	0	62	0	67	0	32	0.91
23398092--23398117	3	8.7	3	100	0	52	30	0	0	69	0.89
23405431--23405503	29	2.5	30	82	6	87	53	6	4	35	1.47
23412051--23412118	33	2.1	33	100	0	136	17	14	23	44	1.86
23413345--23413372	4	7.0	4	100	0	56	25	0	25	50	1.50
23427901--23427957	21	2.7	21	88	0	78	57	0	3	38	1.16
23427924--23427967	21	2.0	20	83	12	52	59	2	4	34	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23441355--23441387	10	3.4	10	87	8	50	15	9	15	60	1.58
23445382--23445712	165	2.0	165	99	0	653	41	16	6	35	1.75
23446601--23446660	19	3.1	19	78	7	59	21	10	18	50	1.76
23446829--23446858	15	1.9	16	93	6	53	63	0	33	3	1.11
23452850--23452899	21	2.5	20	81	12	57	18	2	10	70	1.25
23453121--23453160	17	2.3	18	87	12	57	80	2	0	17	0.83
23458111--23458146	2	18.5	2	94	5	65	47	0	0	52	1.00
23459768--23459815	25	1.9	25	82	0	60	20	31	8	39	1.82
23467481--23467528	3	16.0	3	100	0	96	66	0	0	33	0.92
23467557--23467599	21	2.0	21	90	0	68	41	0	0	58	0.98
23470455--23470519	23	2.8	24	84	9	73	38	0	1	60	1.07
23470463--23470536	23	3.2	23	81	11	64	41	0	4	54	1.19
23471175--23471217	19	2.2	20	80	12	54	62	4	6	25	1.40
23475380--23475482	33	3.2	32	76	12	88	63	5	1	29	1.29
23475408--23475485	29	2.6	30	84	8	97	64	3	1	30	1.20
23476228--23476333	52	2.0	52	85	7	144	33	13	21	31	1.92
23482823--23482864	22	1.9	22	85	9	59	45	2	0	52	1.13
23485184--23485210	14	1.9	14	100	0	54	62	0	7	29	1.22
23485549--23485600	2	26.0	2	100	0	104	0	50	0	50	1.00
23485600--23485638	2	19.5	2	100	0	78	48	0	0	51	1.00
23489810--23489882	25	3.0	23	71	19	58	49	0	0	50	1.00
23494949--23494979	8	3.9	8	95	0	53	16	35	48	0	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23497823--23497864	16	2.6	16	84	3	57	73	0	2	23	0.94
23502209--23502286	29	2.6	29	82	8	77	48	0	3	47	1.20
23502226--23502286	28	2.2	28	77	16	72	50	0	3	45	1.17
23502228--23502301	27	2.7	27	78	14	80	48	0	2	48	1.15
23502295--23502330	18	2.0	18	94	0	63	41	0	5	52	1.24
23502273--23502339	18	3.7	18	69	20	50	46	0	4	49	1.22
23504626--23504742	3	40.3	3	75	10	82	60	4	5	29	1.37
23504630--23504655	5	5.2	5	100	0	52	61	0	0	38	0.96
23513628--23513673	24	1.9	24	82	8	58	52	4	19	23	1.64
23516400--23516444	21	2.2	20	84	7	56	22	4	2	71	1.15
23521754--23521786	16	2.0	17	88	5	50	39	6	12	42	1.67
23528576--23529351	387	2.0	387	97	0	1480	34	11	12	41	1.79
23530914--23530943	9	3.4	9	90	9	53	63	0	0	36	0.95
23530805--23531002	71	2.8	71	89	3	317	44	1	3	50	1.28
23531030--23531095	23	2.8	23	84	6	71	34	1	0	63	1.04
23531038--23531076	11	3.5	11	79	6	51	33	0	0	66	0.92
23531038--23531107	23	3.0	24	83	10	74	35	0	0	64	0.94
23531063--23531112	24	2.0	24	85	11	66	32	0	0	68	0.90
23532840--23532901	25	2.4	25	86	7	81	46	1	1	50	1.20
23532910--23532951	21	2.0	22	86	13	61	52	0	0	47	1.00
23540368--23540490	44	2.8	43	79	6	131	50	14	7	27	1.69
23541016--23541208	22	8.8	21	68	9	93	33	15	18	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23541016--23541320	44	6.9	43	73	5	209	32	16	19	31	1.94
23541016--23541271	88	2.9	87	77	6	255	33	15	18	32	1.93
23541284--23541338	22	2.6	21	74	5	56	32	18	20	29	1.96
23541284--23541365	43	1.9	43	82	5	103	32	15	18	32	1.92
23543020--23543053	17	2.0	17	94	0	59	44	17	17	20	1.87
23543873--23543997	62	2.0	63	83	7	157	32	9	15	43	1.79
23549235--23549269	15	2.3	15	95	0	61	51	5	17	25	1.67
23557481--23557519	18	2.1	20	86	13	57	28	10	0	61	1.28
23562397--23562438	12	3.5	12	81	12	59	66	0	0	33	0.92
23562397--23562438	16	2.3	20	84	15	56	66	0	0	33	0.92
23562391--23562448	24	2.4	25	82	8	84	62	0	1	36	1.06
23563965--23563991	11	2.5	11	100	0	54	0	0	7	92	0.38
23564045--23564093	3	16.3	3	100	0	98	32	0	0	67	0.91
23564628--23564664	14	2.6	14	86	0	56	64	0	2	32	1.07
23576830--23576956	34	3.6	34	68	6	92	29	13	19	37	1.90
23578229--23578266	7	5.4	7	87	12	51	10	2	0	86	0.66
23578229--23578289	13	4.2	13	73	20	50	14	1	1	81	0.84
23578240--23578291	24	2.5	19	77	22	59	19	0	1	78	0.84
23578301--23578348	3	16.0	3	95	0	87	31	0	2	66	1.03
23580618--23580647	14	2.1	14	93	6	51	50	0	0	50	1.00
23583368--23583407	21	1.9	21	85	10	55	35	0	2	62	1.09
23584369--23584455	39	2.3	39	77	15	94	49	0	1	49	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23584431--23584485	15	3.7	15	75	18	51	58	3	0	38	1.16
23585847--23585903	11	4.8	12	77	14	55	59	0	0	40	0.97
23585833--23585903	26	2.8	24	83	12	72	57	0	2	39	1.13
23585847--23585890	22	2.0	22	91	8	72	63	0	0	36	0.95
23585847--23585900	22	2.5	22	81	6	65	61	0	0	38	0.96
23597342--23597376	16	2.2	16	89	0	52	51	11	5	31	1.61
23598711--23598735	2	12.5	2	100	0	50	52	0	0	48	1.00
23598861--23598904	17	2.6	17	96	0	79	43	13	0	43	1.44
23605453--23605618	49	3.1	55	79	16	213	54	10	10	24	1.65
23605436--23605694	106	2.4	106	85	7	335	54	8	11	25	1.65
23605436--23605601	49	3.2	50	77	16	185	55	9	10	24	1.63
23610224--23610504	63	4.4	63	82	2	321	35	11	24	29	1.90
23610224--23610533	126	2.4	127	82	3	356	35	11	24	28	1.90
23610847--23610935	21	4.1	22	84	11	121	40	10	12	37	1.77
23611334--23611638	41	7.4	41	83	2	337	24	11	19	43	1.84
23611340--23611638	81	3.7	81	82	1	339	25	11	20	43	1.85
23612942--23613103	56	2.9	56	86	0	225	53	10	13	22	1.70
23622531--23622557	13	2.1	13	100	0	54	0	18	0	81	0.69
23627709--23627734	11	2.4	11	100	0	52	42	15	0	42	1.47
23629879--23629943	7	9.0	7	75	18	62	16	0	26	56	1.40
23629879--23629943	22	3.0	19	79	18	58	16	0	26	56	1.40
23629879--23629920	15	2.8	15	92	0	66	19	0	21	59	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23629917--23630108	14	13.2	14	66	14	52	18	3	29	48	1.63
23629918--23630231	29	10.9	29	72	10	153	19	2	28	49	1.63
23629925--23630171	58	4.3	58	79	6	173	19	2	27	49	1.62
23630053--23630125	14	5.0	15	70	18	55	23	2	24	49	1.63
23630030--23630171	57	2.5	57	83	4	178	21	2	25	50	1.60
23629961--23630230	58	4.6	57	75	9	197	20	2	27	49	1.63
23630639--23630699	3	20.3	3	82	0	77	32	6	1	59	1.33
23630805--23630830	7	3.7	7	100	0	52	84	0	0	15	0.62
23631849--23631901	23	2.5	21	76	11	54	9	1	9	79	1.02
23631920--23631953	5	7.0	5	86	6	52	76	0	2	20	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147