genome.fa.s445.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  83  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15274802--15274872	33	2.2	33	100	0	142	35	22	11	30	1.89
15282340--15282396	21	2.7	21	94	2	96	59	19	7	14	1.57
15282492--15282533	14	3.0	14	89	0	66	33	11	11	42	1.78
15282928--15283028	49	2.1	49	87	9	145	15	1	61	20	1.44
15282979--15283052	38	2.0	37	89	2	112	13	1	62	22	1.39
15282982--15283064	38	2.2	38	82	6	107	15	2	59	22	1.48
15283300--15283337	20	2.0	20	89	5	60	34	0	5	60	1.19
15283561--15283609	25	1.9	26	91	4	82	46	2	10	40	1.49
15286985--15287021	6	6.2	6	90	0	56	21	0	48	29	1.50
15286984--15287019	18	2.0	18	94	0	63	25	0	47	27	1.52
15287365--15287489	18	6.9	18	73	13	114	32	35	4	28	1.78
15287389--15287490	33	3.0	34	81	5	134	34	32	4	28	1.79
15290120--15290246	66	1.9	66	88	0	191	44	5	11	37	1.64
15293061--15293101	18	2.2	18	86	4	55	34	4	4	56	1.42
15293209--15293277	35	2.0	35	88	8	106	28	2	1	66	1.14
15293250--15293369	9	13.2	8	70	21	53	34	3	2	60	1.27
15293219--15293275	17	3.5	15	75	15	51	29	3	1	64	1.20
15293227--15293384	10	17.1	9	68	21	69	33	2	3	60	1.26
15293243--15293302	25	2.3	27	80	16	72	31	3	0	65	1.09
15293286--15293521	10	23.7	10	65	14	87	35	3	4	57	1.35
15296411--15296453	14	3.0	14	79	3	50	37	0	0	62	0.95
15297941--15297965	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15300657--15301253	296	2.0	296	98	0	1149	28	19	11	40	1.85
15301778--15301880	51	2.0	51	96	0	188	34	6	20	37	1.79
15305916--15305954	2	19.5	2	100	0	78	48	0	0	51	1.00
15307483--15307539	23	2.4	23	82	8	71	63	1	8	26	1.34
15310498--15310532	14	2.5	14	95	0	61	71	17	0	11	1.14
15312213--15312251	19	2.0	20	90	10	62	41	5	15	38	1.69
15312398--15312428	16	1.9	16	93	0	53	29	9	19	41	1.83
15312398--15312506	50	2.1	50	86	5	146	33	11	14	40	1.83
15315384--15315420	19	1.9	19	88	0	56	48	18	2	29	1.62
15323389--15323439	21	2.5	21	77	22	63	23	21	25	29	1.99
15324667--15324834	89	1.9	90	91	2	277	42	7	3	45	1.50
15326547--15326580	14	2.3	15	90	5	52	52	8	0	38	1.33
15326644--15326708	19	3.5	18	81	10	69	60	9	6	24	1.50
15326806--15326831	11	2.4	11	100	0	52	42	0	0	57	0.98
15332388--15332431	21	2.1	21	86	0	61	59	13	6	20	1.57
15333408--15333463	23	2.4	23	90	0	94	48	17	12	21	1.80
15333610--15333644	12	2.8	13	82	8	54	77	14	5	2	1.07
15335271--15335611	133	2.6	125	78	9	355	35	20	14	29	1.92
15335524--15335632	41	2.7	41	84	4	132	33	20	13	32	1.92
15335597--15335656	26	2.3	26	86	8	79	30	15	20	35	1.93
15335771--15335820	18	2.8	18	84	0	55	26	24	12	38	1.90
15336238--15336377	65	2.2	65	87	6	203	35	21	13	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15336364--15336418	22	2.5	21	80	8	65	36	27	9	27	1.87
15336097--15336567	87	5.4	87	70	13	324	36	21	12	29	1.90
15336474--15336708	127	1.9	127	86	3	339	34	19	11	33	1.88
15337362--15337762	146	2.7	145	84	4	477	33	17	10	38	1.84
15338773--15338825	21	2.5	21	84	0	70	22	5	13	58	1.56
15340517--15340549	15	2.2	15	100	0	66	30	6	27	36	1.81
15344657--15344699	19	2.3	19	88	8	61	39	2	0	58	1.11
15351299--15351333	17	2.1	17	88	0	52	45	20	0	34	1.51
15355785--15355819	12	3.0	12	87	4	54	91	0	8	0	0.42
15357038--15357078	19	2.1	20	86	4	57	43	2	0	53	1.13
15357034--15357103	31	2.2	32	76	18	76	45	2	0	51	1.16
15357354--15357389	16	2.2	17	90	9	58	58	0	0	41	0.98
15357354--15357394	16	2.7	15	85	14	57	60	0	0	39	0.96
15357536--15357577	18	2.4	18	88	4	59	45	2	0	52	1.13
15366396--15366444	16	3.1	16	81	0	53	44	6	6	42	1.54
15371259--15371304	23	2.0	23	91	0	74	47	21	6	23	1.74
15382489--15382522	5	6.8	5	96	0	59	0	35	2	61	1.11
15386095--15386123	2	14.5	2	100	0	58	0	48	0	51	1.00
15395104--15395293	102	1.9	101	84	5	222	38	10	8	41	1.71
15395255--15395294	22	1.9	20	90	10	62	35	10	10	45	1.71
15397606--15397659	25	2.2	25	86	6	74	48	0	1	50	1.11
15397612--15397671	26	2.3	27	77	8	70	50	1	3	45	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15397640--15397718	18	4.5	18	72	18	53	53	1	1	44	1.16
15397809--15397859	21	2.4	21	84	9	68	49	0	1	49	1.12
15397764--15397852	44	2.0	46	84	8	121	44	1	2	51	1.21
15398000--15398097	42	2.4	39	73	15	90	45	2	3	48	1.29
15398012--15398094	42	2.0	42	83	4	105	44	2	2	50	1.28
15398175--15398211	17	2.2	17	100	0	74	48	5	5	40	1.49
15402409--15402491	41	2.0	44	85	7	118	36	7	7	49	1.58
15402408--15402509	44	2.4	42	80	9	111	41	5	5	47	1.52
15402188--15403757	130	12.0	131	79	5	1311	42	9	8	39	1.68
15402556--15402635	43	1.9	43	82	10	103	31	7	8	52	1.60
15402680--15402704	13	1.9	13	100	0	50	40	12	0	48	1.40
15407994--15408075	43	2.0	41	85	4	110	50	7	20	21	1.73
15409715--15409852	21	6.8	20	72	16	81	20	2	29	47	1.65
15409714--15409852	42	3.4	43	77	11	139	20	2	29	46	1.65
15409773--15409841	14	5.2	13	71	11	50	21	2	28	46	1.66
15412503--15412560	22	2.6	22	81	5	64	36	8	13	41	1.76
15412570--15412607	11	3.4	11	88	3	58	36	26	7	28	1.84
15413640--15413944	160	1.9	160	85	4	427	39	20	7	32	1.81
15417847--15417892	24	1.9	24	81	0	56	30	21	2	45	1.64
15425139--15425179	19	2.1	20	86	4	57	43	2	0	53	1.13
15425135--15425204	31	2.2	32	76	18	76	45	2	0	51	1.16
15427052--15427147	41	2.4	40	82	1	111	32	5	14	47	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15427335--15427394	16	3.8	16	84	0	75	48	1	5	45	1.34
15427369--15427399	16	1.9	16	93	0	53	58	3	0	38	1.15
15427727--15427786	16	3.8	16	84	0	75	46	3	5	45	1.41
15427761--15427791	16	1.9	16	93	0	53	58	3	0	38	1.15
15427729--15427793	32	2.0	32	81	0	76	47	6	4	41	1.49
15427232--15428023	392	2.0	392	97	0	1494	39	11	8	39	1.73
15428406--15428464	24	2.4	25	80	5	68	57	0	0	42	0.98
15429689--15429721	2	16.5	2	100	0	66	51	0	48	0	1.00
15433297--15433330	5	6.8	5	96	0	59	61	2	35	0	1.11
15446172--15446228	17	3.4	16	75	17	62	52	0	3	43	1.18
15446289--15447803	131	11.3	131	76	9	1116	42	9	7	39	1.66
15446287--15447790	261	5.6	260	76	10	1013	43	9	7	39	1.66
15447114--15447852	130	5.6	129	78	6	691	43	10	8	37	1.69
15448425--15448469	3	15.0	3	100	0	90	33	0	0	66	0.92
15449211--15449253	18	2.4	18	80	0	50	20	4	2	72	1.14
15466995--15467134	21	6.8	20	74	10	97	20	5	28	45	1.72
15466995--15467134	20	6.7	21	70	13	85	20	5	28	45	1.72
15467467--15467503	19	1.9	20	88	5	58	10	5	0	83	0.79
15467475--15467507	14	2.4	14	95	5	59	15	3	0	81	0.80
15467876--15467924	11	4.4	11	78	12	55	51	2	0	46	1.12
15467875--15467935	24	2.5	24	97	0	113	50	3	0	45	1.17
15469387--15469425	12	3.0	12	82	17	51	56	0	2	41	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15469809--15469879	22	3.2	22	76	21	69	32	8	15	43	1.77
15470952--15471249	160	1.9	160	83	4	395	40	18	7	34	1.78
15475966--15476268	148	2.0	148	98	0	588	33	15	12	37	1.86
15478159--15478202	21	2.1	21	100	0	88	45	13	27	13	1.81
15478600--15478645	20	2.2	21	80	3	58	63	10	2	23	1.38
15480739--15480822	40	2.1	40	82	6	98	51	5	9	33	1.59
15480798--15480967	71	2.4	72	77	8	193	48	4	13	34	1.62
15481027--15481099	37	2.0	37	88	0	110	47	8	0	43	1.33
15482997--15483031	13	2.7	13	91	8	54	68	0	0	31	0.90
15492449--15492478	12	2.5	12	88	0	51	90	0	10	0	0.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147