genome.fa.s445.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  6  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1061579--1061640	29	2.2	29	85	2	81	38	9	3	48	1.52
1063444--1063487	19	2.4	19	96	3	81	13	25	15	45	1.83
1064210--1064252	19	2.4	18	81	11	61	39	0	0	60	0.97
1064217--1064254	20	2.0	20	94	5	69	36	0	0	63	0.95
1064555--1064603	13	3.7	13	89	8	64	51	4	0	44	1.20
1068292--1068327	6	6.0	6	93	0	54	16	22	0	61	1.35
1073973--1074026	23	2.3	23	83	3	72	25	9	5	59	1.50
1074662--1074879	109	2.0	109	99	0	427	33	13	18	34	1.89
1078161--1078217	2	28.5	2	100	0	114	49	0	0	50	1.00
1083782--1084147	122	2.9	127	87	8	575	30	18	17	33	1.94
1084387--1084439	27	2.0	27	84	0	70	75	0	9	15	1.04
1088689--1088739	18	2.8	18	74	8	50	43	0	0	56	0.99
1089106--1089143	17	2.2	18	86	9	53	68	0	2	28	1.03
1089104--1089148	23	2.0	23	82	8	56	66	0	2	31	1.04
1091745--1091779	17	2.0	18	88	5	54	45	0	2	51	1.16
1092488--1092521	2	17.0	2	87	0	50	44	0	0	55	0.99
1092374--1092609	121	1.9	122	91	2	386	47	7	10	34	1.66
1104174--1104276	52	2.0	52	100	0	206	58	1	1	37	1.21
1118698--1118741	20	2.2	20	88	4	63	34	0	0	65	0.93
1118766--1118817	12	4.3	12	80	9	61	65	0	0	34	0.93
1121525--1121549	6	4.2	6	100	0	50	16	0	0	84	0.63
1122275--1122307	16	2.1	15	94	5	57	27	0	0	72	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1122587--1122616	16	1.9	15	93	6	51	56	3	0	40	1.16
1128178--1128225	17	2.8	18	81	15	57	56	2	20	20	1.53
1137618--1137675	30	1.9	30	89	0	89	39	6	18	34	1.78
1142529--1142570	13	3.1	14	83	10	52	73	7	19	0	1.05
1142949--1143117	10	15.9	11	66	15	54	35	0	1	62	1.07
1143075--1143145	10	7.1	10	70	22	51	42	1	1	54	1.17
1143085--1143115	16	1.9	16	93	0	53	35	0	0	64	0.94
1143044--1143117	14	5.6	14	73	20	52	35	0	1	63	1.03
1143932--1143969	17	2.2	18	85	4	51	71	0	0	28	0.87
1144023--1144080	20	3.0	21	83	14	72	56	0	0	43	0.99
1149428--1149692	58	4.3	59	85	8	327	21	5	29	43	1.75
1149437--1149692	60	4.2	61	84	9	342	22	5	29	42	1.76
1149430--1149694	125	2.1	122	87	6	374	21	5	29	43	1.75
1156047--1156077	6	5.2	6	92	0	53	51	32	0	16	1.44
1164029--1164061	16	2.1	16	88	11	50	33	9	9	48	1.66
1166381--1166419	13	3.0	13	80	0	51	41	0	0	58	0.98
1166373--1166453	33	2.5	33	74	20	80	40	0	2	56	1.12
1166554--1166587	13	2.6	13	85	0	50	47	2	0	50	1.16
1166642--1166670	15	2.0	15	93	6	51	17	13	0	68	1.20
1168489--1168554	29	2.2	30	91	2	107	42	0	4	53	1.21
1169792--1169873	32	2.5	31	74	5	74	52	0	2	45	1.14
1171562--1171620	29	2.0	29	83	6	75	55	3	1	38	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1171596--1171633	17	2.1	18	90	9	60	57	5	0	36	1.21
1177237--1177263	4	6.8	4	100	0	54	25	0	22	51	1.48
1181297--1181385	17	4.8	18	76	15	83	60	7	0	31	1.25
1181297--1181385	9	9.6	9	81	12	83	60	7	0	31	1.25
1181306--1181385	38	2.2	38	84	8	103	61	6	0	32	1.21
1181620--1181742	18	6.8	17	75	12	104	27	2	3	66	1.19
1181622--1181839	36	6.3	33	68	19	117	31	1	3	63	1.21
1181628--1181742	9	12.7	9	72	9	83	28	2	3	65	1.22
1181755--1181796	17	2.6	15	82	17	57	33	2	7	57	1.39
1181742--1181839	16	5.6	17	74	20	69	35	1	3	60	1.19
1181740--1181841	38	2.6	38	81	12	107	35	0	2	60	1.18
1185291--1185315	2	12.5	2	100	0	50	52	0	0	48	1.00
1192952--1192989	19	2.0	19	85	10	51	28	2	5	63	1.30
1193943--1193995	17	3.1	17	76	10	54	58	0	1	39	1.09
1196022--1196080	26	2.4	25	85	5	84	50	6	3	38	1.45
1196715--1196815	13	8.2	13	69	20	58	67	0	0	31	0.98
1196714--1196747	16	2.0	18	88	11	54	58	0	5	35	1.22
1196733--1196770	20	1.9	20	88	0	58	73	0	0	26	0.83
1196750--1196815	26	2.5	26	78	9	71	69	0	0	30	0.88
1204863--1204889	11	2.5	11	100	0	54	51	0	0	48	1.00
1205486--1205535	24	2.1	24	96	0	91	32	4	24	40	1.73
1207633--1207667	14	2.5	15	86	13	56	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1208751--1208829	25	2.8	28	70	22	67	43	0	6	50	1.27
1208998--1209047	23	2.2	23	85	0	64	52	0	2	46	1.12
1217627--1217679	22	2.2	22	81	18	54	60	0	1	37	1.08
1229406--1229446	21	2.1	20	86	13	59	51	0	0	48	1.00
1229452--1229501	25	2.0	25	84	0	64	52	0	4	44	1.20
1229460--1229506	25	1.9	24	91	4	76	53	0	0	46	1.00
1235878--1236039	83	1.9	84	83	3	211	35	5	11	47	1.62
1235915--1236039	43	3.0	39	75	12	115	36	5	11	46	1.63
1241306--1241368	6	10.8	6	89	6	85	9	17	38	34	1.82
1241307--1241368	17	3.6	17	93	2	97	8	17	38	35	1.80
1244536--1244587	21	2.5	22	93	6	90	51	0	0	48	1.00
1247509--1247543	13	2.6	14	90	4	54	65	0	2	31	1.07
1248665--1248700	11	3.1	11	85	14	54	63	0	8	27	1.23
1248671--1248695	13	1.9	13	100	0	50	64	0	8	28	1.22
1252437--1252485	24	2.0	26	84	11	68	38	2	2	57	1.22
1257742--1257809	28	2.4	28	80	9	68	33	1	0	64	1.02
1257960--1258028	29	2.3	30	85	12	97	50	0	2	46	1.16
1259861--1259896	18	2.0	18	94	0	63	52	0	0	47	1.00
1259854--1259916	31	2.0	31	81	6	74	50	0	1	47	1.10
1259876--1259956	37	2.2	36	84	8	101	54	0	0	45	0.99
1259913--1259988	29	2.6	30	83	6	86	47	0	0	52	1.00
1265348--1265390	3	14.3	3	95	0	77	34	0	2	62	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1267053--1267285	116	2.0	116	99	0	457	34	24	12	28	1.92
1268372--1268414	22	2.0	22	85	0	59	32	0	2	65	1.06
1272699--1272737	20	1.9	21	89	5	62	74	0	0	25	0.82
1276896--1276970	29	2.5	29	75	12	71	46	1	8	44	1.41
1277006--1277081	12	6.4	12	69	24	54	50	1	0	48	1.09
1277015--1277069	18	3.1	18	72	15	51	50	1	0	47	1.11
1277038--1277123	29	2.8	30	84	7	120	53	0	0	46	1.00
1277078--1277121	19	2.2	20	88	4	63	56	0	0	43	0.99
1282856--1282942	20	4.1	20	74	20	68	65	0	1	33	1.00
1282919--1282988	28	2.5	28	77	9	70	52	1	0	45	1.09
1283043--1283087	24	1.9	23	81	4	54	51	6	0	42	1.28
1285471--1285510	16	2.5	17	88	8	57	37	0	2	60	1.11
1287302--1287377	31	2.5	31	84	4	100	50	11	3	34	1.58
1287392--1287451	24	2.5	24	86	0	84	40	8	6	45	1.61
1290544--1290577	17	2.0	17	88	11	52	61	0	0	38	0.96
1291195--1291254	30	2.0	30	86	0	84	51	1	8	38	1.42
1292388--1292455	29	2.4	29	76	13	72	51	1	1	45	1.19
1292732--1292855	61	2.0	62	92	4	207	45	8	12	33	1.72
1298126--1298165	20	2.0	20	95	0	71	50	22	5	22	1.68
1302160--1302195	15	2.4	15	90	0	54	16	8	11	63	1.49
1302567--1302864	159	1.9	158	82	8	372	43	13	15	27	1.84
1304736--1304782	21	2.3	21	85	3	60	27	6	0	65	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1305714--1305793	36	2.2	35	80	10	90	47	6	15	31	1.70
1323290--1323356	11	5.6	11	78	16	55	61	0	1	37	1.05
1323299--1323352	12	4.3	12	78	15	56	61	0	1	37	1.07
1333838--1333884	20	2.3	20	82	7	60	65	0	2	31	1.04
1333837--1333884	9	5.0	9	80	12	51	64	0	2	33	1.05
1333927--1333986	25	2.5	24	81	5	75	45	0	0	55	0.99
1335182--1335206	7	3.6	7	100	0	50	44	12	0	44	1.41
1335556--1335622	30	2.2	30	89	0	98	41	5	2	49	1.42
1336033--1336063	16	1.9	16	93	0	53	29	0	3	67	1.06
1339447--1339498	21	2.3	22	70	12	52	42	1	17	38	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147