genome.fa.s445.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  13  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2812833--2812869	2	18.5	2	100	0	74	51	0	48	0	1.00
2815990--2816071	24	3.4	23	73	18	69	29	1	6	63	1.26
2815990--2816061	12	5.8	12	75	12	58	29	1	6	62	1.30
2819374--2819422	24	2.0	24	96	0	89	40	14	8	36	1.75
2819447--2819479	14	2.2	16	89	10	52	36	0	0	63	0.95
2833174--2833217	3	14.7	3	100	0	88	68	0	0	31	0.90
2836903--2836952	25	2.1	25	85	7	68	36	4	8	52	1.50
2843530--2843566	7	5.3	7	100	0	74	70	0	0	29	0.88
2844145--2844195	22	2.4	22	83	9	61	54	0	3	41	1.19
2844143--2844198	20	2.7	22	81	8	64	57	0	3	39	1.16
2844206--2844239	16	2.2	16	89	5	52	50	0	0	50	1.00
2845537--2845591	25	2.2	25	93	3	94	67	3	0	29	1.08
2845832--2845898	30	2.3	30	84	7	84	46	0	1	52	1.09
2845988--2846040	27	2.0	27	82	14	65	54	0	1	43	1.11
2846166--2846239	29	2.6	29	82	0	103	25	8	12	54	1.65
2847180--2847232	22	2.4	22	87	3	79	49	0	0	50	1.00
2847255--2847279	13	1.9	13	100	0	50	60	0	0	40	0.97
2848117--2848141	10	2.5	10	100	0	50	48	32	8	12	1.69
2857338--2857394	19	2.7	21	71	15	55	38	5	7	49	1.53
2858448--2858482	3	11.7	3	100	0	70	31	0	0	68	0.90
2865814--2865906	48	1.9	48	84	4	125	38	16	13	31	1.88
2867686--2867724	2	19.5	2	100	0	78	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2874510--2874547	13	2.8	14	84	8	51	47	0	0	52	1.00
2874828--2874886	16	3.6	16	78	13	66	54	1	0	44	1.10
2874828--2874886	17	3.6	17	79	6	68	54	1	0	44	1.10
2879802--2879868	27	2.4	27	90	2	107	43	4	5	46	1.48
2880322--2880392	26	2.7	25	80	12	81	61	4	1	32	1.23
2881161--2881186	2	13.0	2	100	0	52	50	0	0	50	1.00
2888979--2889003	8	3.1	8	100	0	50	24	12	12	52	1.72
2891064--2891144	37	2.2	36	76	8	83	53	18	8	19	1.70
2891163--2891216	24	2.2	25	80	9	67	50	14	5	29	1.66
2891197--2891341	35	4.1	35	77	6	132	49	22	5	22	1.70
2891197--2891341	70	2.1	71	81	3	168	49	22	5	22	1.70
2891918--2891969	22	2.3	23	83	9	63	26	3	7	61	1.41
2892049--2892091	16	2.5	17	88	11	61	44	2	0	53	1.13
2894432--2894463	16	2.0	16	93	0	55	34	0	0	65	0.93
2896731--2896806	30	2.6	29	73	8	73	53	0	0	46	1.00
2909485--2909544	29	2.1	29	93	6	104	25	23	23	28	2.00
2910599--2910708	52	2.1	52	86	1	148	34	23	16	25	1.95
2911927--2911966	16	2.4	18	84	16	59	72	0	0	27	0.85
2914015--2914079	6	10.3	6	77	9	67	20	1	61	16	1.42
2914007--2914088	33	2.5	33	80	4	94	20	1	60	17	1.42
2915610--2915812	101	2.0	101	92	1	336	40	16	16	26	1.89
2916676--2916705	3	10.0	3	100	0	60	66	0	33	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2919706--2919746	20	2.0	21	85	9	57	46	17	9	26	1.79
2921248--2921299	26	2.0	26	100	0	104	50	15	15	19	1.79
2933347--2933390	21	2.1	21	100	0	88	20	4	31	43	1.72
2933622--2934025	217	1.9	215	86	3	587	30	25	10	33	1.89
2934135--2934162	3	9.3	3	100	0	56	64	0	0	35	0.94
2935197--2935232	3	11.7	3	88	5	54	63	0	5	30	1.17
2935649--2935759	31	3.6	31	91	0	168	44	33	0	22	1.53
2935658--2935735	15	5.1	15	70	16	61	43	30	0	25	1.55
2935739--2935807	28	2.4	28	85	9	95	52	27	0	20	1.47
2942119--2942182	29	2.2	30	94	2	112	70	12	3	14	1.29
2942134--2942195	29	2.2	29	85	2	81	70	12	4	11	1.30
2947107--2947155	26	1.9	26	95	4	91	46	4	8	40	1.52
2955380--2955424	18	2.4	18	85	10	56	66	0	4	28	1.11
2955382--2955423	16	2.5	16	88	7	57	64	0	4	30	1.14
2957941--2958002	33	1.9	33	83	9	83	33	0	1	64	1.03
2958050--2958106	29	2.0	29	89	6	89	56	15	7	21	1.63
2970170--2970267	48	2.0	48	100	0	196	27	23	20	28	1.99
2970179--2970256	23	3.3	23	63	19	61	26	23	21	28	1.99
2972921--2973045	66	1.9	66	88	0	187	28	28	11	32	1.91
2973168--2973280	56	2.0	56	91	0	181	25	29	12	32	1.92
2973398--2973526	66	2.0	66	84	3	170	27	27	13	32	1.93
2972721--2973948	242	5.1	246	87	4	1729	27	24	16	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2973705--2974111	180	2.3	180	89	0	591	26	23	18	31	1.97
2974065--2974194	66	2.0	66	83	3	163	27	28	14	29	1.95
2973464--2974800	426	3.1	424	89	1	2036	27	23	18	31	1.97
2973885--2974357	246	1.9	246	89	1	725	26	24	17	30	1.98
2974131--2974554	180	2.4	180	91	0	670	27	23	18	30	1.98
2974496--2974620	66	1.9	66	81	6	155	27	26	12	33	1.93
2974312--2975214	246	3.7	245	90	2	1418	26	23	18	31	1.98
2974738--2974866	66	2.0	66	90	0	204	27	27	13	31	1.94
2974984--2975115	66	2.0	67	84	1	176	25	26	16	31	1.96
2977311--2977354	21	2.2	20	87	4	61	68	2	0	29	1.02
2977277--2977354	26	3.0	25	75	17	70	65	1	0	33	1.01
2977919--2977985	22	3.3	22	76	18	81	44	4	0	50	1.22
2977940--2978020	29	2.8	29	74	7	83	44	4	0	50	1.23
2977994--2978042	22	2.1	22	88	7	71	51	0	2	46	1.12
2978075--2978301	10	23.1	10	66	19	113	47	1	3	48	1.28
2978146--2978303	29	5.3	30	76	9	101	46	1	1	50	1.20
2978075--2978301	19	11.6	19	68	17	85	47	1	3	48	1.28
2978245--2978333	31	2.8	32	83	5	101	49	3	3	43	1.35
2978381--2978466	37	2.4	37	84	9	106	50	2	2	45	1.27
2978459--2978512	19	2.9	19	76	20	60	46	3	7	42	1.49
2978618--2978699	24	3.5	24	72	21	68	39	0	1	59	1.05
2978656--2978704	13	3.9	13	82	15	59	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2978910--2978951	19	2.3	18	84	8	59	33	2	4	59	1.31
2979806--2979839	15	2.3	15	89	0	50	67	8	2	20	1.31
2983113--2983190	32	2.4	32	86	0	111	25	3	17	52	1.62
2982976--2983283	167	1.8	167	80	4	370	29	7	16	45	1.75
2984583--2984678	20	4.6	20	77	14	86	48	28	3	19	1.64
2985025--2985070	3	15.3	3	91	8	76	69	0	0	30	0.89
2995554--2995591	17	2.2	17	100	0	76	10	10	18	60	1.57
2997216--2997263	12	4.1	11	84	10	60	75	0	4	20	0.97
2997273--2997315	16	2.9	16	80	16	56	67	0	9	23	1.19
2997252--2997329	29	2.7	29	72	9	77	73	1	8	16	1.15
2998613--2998637	2	12.5	2	100	0	50	52	0	0	48	1.00
3004159--3004207	23	2.1	24	92	3	82	28	8	24	38	1.84
3006399--3006459	28	2.2	28	81	0	77	24	3	8	63	1.37
3007465--3007537	14	5.5	13	79	10	78	19	1	2	76	0.98
3007464--3007537	28	2.8	26	85	6	96	18	1	2	77	0.97
3007648--3007700	13	4.2	13	73	24	51	33	3	11	50	1.56
3024299--3024456	7	25.5	6	70	20	60	15	1	34	48	1.54
3024380--3024442	12	5.1	12	75	11	56	22	0	30	47	1.51
3025459--3025511	25	2.1	25	86	13	74	35	1	1	60	1.19
3026032--3026181	19	7.8	19	68	14	60	16	2	34	46	1.59
3026125--3026256	7	20.0	7	68	14	75	15	0	37	46	1.51
3026144--3026256	13	8.5	14	75	8	76	15	0	38	46	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3026205--3026268	7	9.4	7	74	6	51	18	1	29	50	1.57
3035619--3035652	13	2.8	12	86	8	50	52	0	0	47	1.00
3035628--3035701	29	2.6	27	78	8	76	50	6	1	41	1.37
3035688--3035717	12	2.5	12	94	0	51	56	3	0	40	1.16
3045683--3045813	67	2.0	67	93	0	226	32	21	14	31	1.93
3056133--3056179	24	2.0	24	91	0	76	55	0	2	42	1.12
3058320--3058354	2	17.5	2	100	0	70	51	0	0	48	1.00
3058354--3058390	2	18.5	2	100	0	74	51	0	48	0	1.00
3059196--3059239	3	14.7	3	90	0	70	31	0	2	65	1.05
3059991--3060030	20	2.0	20	90	0	62	20	35	30	15	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147