genome.fa.s445.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  144  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26817362--26817406	12	3.8	12	81	18	58	55	2	0	42	1.12
26818280--26818319	14	2.9	13	85	10	53	45	0	0	55	0.99
26821268--26821301	2	17.0	2	93	0	59	47	2	0	50	1.16
26825304--26825345	21	2.0	21	90	0	66	38	35	19	7	1.79
26846293--26846470	95	1.9	95	90	0	284	38	4	10	47	1.58
26846449--26846477	7	4.1	7	100	0	58	41	0	0	58	0.98
26846613--26846693	20	3.5	20	69	28	63	59	0	1	39	1.05
26846609--26846708	50	2.0	50	100	0	200	60	0	2	38	1.09
26846609--26846686	25	3.1	25	74	7	95	58	0	2	38	1.12
26846630--26846714	25	3.4	25	75	8	100	62	0	1	36	1.03
26853478--26853540	28	2.3	28	83	8	76	60	3	0	36	1.13
26854135--26854172	2	19.0	2	94	0	67	52	0	0	47	1.00
26854454--26854491	20	1.9	20	88	0	58	36	5	0	57	1.21
26861940--26861976	10	3.5	11	78	14	51	51	0	0	48	1.00
26864148--26864195	20	2.3	20	85	3	69	52	2	0	45	1.12
26864422--26864450	2	14.5	2	100	0	58	48	0	0	51	1.00
26865651--26865689	18	2.1	19	85	4	53	43	0	0	56	0.99
26867784--26867812	15	2.0	15	93	6	51	75	0	0	24	0.80
26869381--26869431	20	2.6	19	81	9	66	49	0	0	50	1.00
26874690--26874873	102	1.8	102	92	2	316	47	8	25	19	1.76
26886890--26886920	15	2.1	15	100	0	62	74	0	0	25	0.82
26887794--26887858	29	2.3	28	81	7	69	46	1	0	52	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26887810--26887878	30	2.3	29	85	2	93	44	0	0	55	0.99
26888724--26888784	32	2.0	30	83	6	77	54	1	0	44	1.10
26889165--26889214	23	2.2	23	88	0	73	24	30	22	24	1.99
26891856--26892133	143	2.0	142	87	0	403	34	19	18	26	1.95
26893779--26893828	17	2.8	18	81	6	57	44	14	10	32	1.78
26894068--26894142	21	3.6	21	87	7	100	34	17	8	40	1.79
26895049--26895102	27	2.0	27	88	0	81	16	27	27	27	1.97
26895840--26895901	28	2.2	28	91	0	97	58	3	8	30	1.43
26898681--26898743	23	2.7	24	79	18	62	31	0	7	60	1.26
26900436--26900487	18	2.8	20	86	13	76	65	0	0	34	0.93
26904539--26904643	41	2.6	40	85	4	140	17	20	5	57	1.60
26904611--26904731	52	2.4	50	93	4	199	23	21	2	52	1.59
26910066--26910111	24	1.9	24	90	0	74	23	15	15	45	1.84
26912307--26912341	12	3.0	11	88	12	52	48	0	0	51	1.00
26913065--26913228	80	2.0	80	85	2	222	38	13	6	42	1.69
26916041--26916097	22	2.5	23	76	15	57	36	0	3	59	1.14
26916121--26916163	20	2.3	19	92	8	70	62	0	0	37	0.95
26916131--26916169	20	2.1	19	90	9	62	61	0	0	38	0.96
26916804--26916836	17	1.9	17	93	0	57	33	21	21	24	1.97
26918305--26918339	14	2.6	13	90	4	52	62	0	2	34	1.10
26918375--26918419	20	2.2	20	80	7	56	71	8	11	8	1.32
26922822--26922859	18	2.1	18	85	9	51	39	5	0	55	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26928087--26928141	14	4.1	13	77	20	51	65	0	1	32	1.03
26937811--26937854	20	2.3	19	84	4	52	29	4	2	63	1.26
26938036--26938069	17	1.9	18	88	5	52	64	0	2	32	1.08
26938105--26938145	19	2.2	18	91	4	64	65	4	4	24	1.32
26945991--26946105	59	1.9	59	91	0	185	33	16	7	41	1.77
26957858--26957882	13	1.9	13	100	0	50	76	0	0	24	0.80
26962316--26962360	18	2.5	18	81	0	54	55	0	4	40	1.20
26979110--26979191	43	2.0	43	86	11	118	48	0	1	50	1.08
26979253--26979282	14	2.1	14	93	0	51	43	6	0	50	1.28
26982123--26982170	20	2.4	20	92	0	78	47	25	14	12	1.79
26988414--26988488	24	3.2	24	76	14	77	38	0	0	61	0.96
26988461--26988496	13	2.8	13	91	0	54	30	0	0	69	0.89
26988456--26988501	11	4.0	11	81	10	56	32	0	0	67	0.91
26988457--26988516	24	2.5	24	83	5	68	33	5	0	61	1.17
27002584--27002637	9	6.2	8	82	18	56	27	0	3	68	1.06
27002584--27002738	6	25.2	6	73	18	65	28	0	3	67	1.08
27002584--27002753	26	6.2	26	70	21	82	27	0	3	68	1.05
27002661--27002736	38	2.0	39	87	12	113	27	0	0	72	0.85
27002665--27002748	6	13.3	6	79	10	80	23	0	0	76	0.79
27002703--27002745	10	4.1	10	80	11	50	18	0	0	81	0.69
27012757--27012787	15	2.1	15	93	0	53	29	9	32	29	1.89
27015022--27015052	2	15.5	2	93	0	53	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27017194--27017249	25	2.3	24	87	6	85	41	7	1	50	1.40
27017369--27017398	14	2.1	15	93	6	53	43	0	0	56	0.99
27025235--27025262	2	14.0	2	100	0	56	50	0	0	50	1.00
27028184--27028239	27	2.1	27	93	0	94	53	14	25	7	1.66
27042150--27042193	21	2.0	22	91	4	72	40	0	0	59	0.98
27042661--27042718	23	2.4	23	85	5	71	62	0	0	37	0.96
27044249--27044307	18	3.5	17	76	19	61	44	0	3	52	1.17
27044241--27044311	31	2.2	33	80	11	87	50	0	2	46	1.16
27044328--27044368	22	1.9	21	85	5	55	39	0	2	58	1.11
27044445--27044484	17	2.4	17	82	0	53	47	2	0	50	1.14
27056870--27056907	21	1.9	20	89	10	60	52	10	7	28	1.64
27067002--27067046	15	2.7	18	80	13	60	24	2	0	73	0.95
27066999--27067052	24	2.2	24	87	6	74	25	1	1	70	1.07
27067002--27067046	9	5.3	9	74	15	51	24	2	0	73	0.95
27068013--27068044	2	16.0	2	100	0	64	50	0	0	50	1.00
27068106--27068144	18	2.2	17	90	4	60	33	2	0	64	1.08
27071034--27071081	20	2.4	19	73	10	51	50	0	0	50	1.00
27071883--27071961	23	3.5	23	75	16	76	40	0	1	58	1.06
27073300--27073343	18	2.3	20	80	11	56	52	0	0	47	1.00
27073385--27073438	26	2.0	26	83	16	67	59	3	0	37	1.15
27079421--27079454	11	3.0	11	91	4	50	85	2	11	0	0.71
27080037--27080062	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27091276--27091333	24	2.4	24	77	11	64	62	0	0	37	0.96
27095905--27095950	22	2.1	22	84	8	58	39	0	4	56	1.19
27096378--27096446	14	4.7	14	77	16	61	39	5	0	55	1.24
27096398--27096444	16	3.0	16	76	14	53	36	4	0	59	1.17
27096384--27096444	31	2.0	30	84	9	79	37	4	0	57	1.20
27109815--27110057	102	2.4	102	85	8	332	43	23	11	22	1.84
27110290--27110419	66	2.0	65	84	1	170	38	23	16	20	1.93
27114340--27114366	3	9.0	3	100	0	54	33	0	0	66	0.92
27130334--27130364	3	10.3	3	100	0	62	67	0	0	32	0.91
27130508--27130532	13	1.9	13	100	0	50	92	0	8	0	0.40
27130637--27130707	25	2.7	27	83	10	78	66	0	0	33	0.92
27131661--27131688	6	4.7	6	100	0	56	46	0	53	0	1.00
27138683--27138712	15	2.0	15	93	0	51	63	0	20	16	1.31
27138898--27138933	2	18.0	2	100	0	72	50	0	0	50	1.00
27140508--27140548	14	2.9	14	89	7	57	58	0	0	41	0.98
27141613--27141662	22	2.3	22	80	16	59	56	0	0	44	0.99
27142899--27142940	22	1.9	22	85	0	57	57	11	2	28	1.47
27168875--27168917	22	2.1	20	83	12	52	58	13	4	23	1.55
27185921--27185962	22	1.9	22	85	9	59	47	4	0	47	1.23
27189948--27189995	13	4.0	12	84	10	62	33	0	0	66	0.92
27189934--27189995	26	2.4	26	81	7	74	33	1	0	64	1.03
27190791--27190874	29	2.9	29	72	1	87	40	5	4	48	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27190853--27190911	17	3.5	17	76	0	55	45	3	0	50	1.18
27190884--27190918	17	1.9	18	88	11	54	48	2	0	48	1.16
27190892--27190971	29	2.7	29	76	7	90	60	1	2	36	1.18
27193174--27193226	21	2.5	20	79	11	61	39	0	5	54	1.24
27196096--27196137	2	21.0	2	85	0	57	52	0	2	45	1.13
27197202--27197228	10	2.7	10	100	0	54	66	0	0	33	0.92
27202030--27202089	19	3.3	19	75	15	54	66	1	0	31	1.01
27208069--27208106	2	19.0	2	100	0	76	50	0	50	0	1.00
27209851--27209916	30	2.2	31	84	10	84	34	3	3	59	1.28
27209851--27209916	26	2.3	29	83	16	86	34	3	3	59	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147