genome.fa.s445.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  31  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6600878--6600914	6	6.2	6	93	0	65	0	0	32	67	0.91
6605844--6605878	15	2.3	16	85	14	56	45	11	31	11	1.76
6610438--6610490	15	3.4	15	77	15	54	49	0	0	50	1.00
6610438--6610472	18	2.0	17	88	5	52	48	0	0	51	1.00
6610463--6610502	21	1.9	21	84	0	53	47	2	0	50	1.14
6610523--6610565	18	2.3	19	84	8	61	34	0	0	65	0.93
6610762--6610800	17	2.3	17	86	0	51	53	0	0	46	1.00
6623754--6623807	24	2.3	24	83	3	65	50	0	9	40	1.35
6629787--6629832	18	2.5	19	85	3	67	50	2	2	45	1.26
6630873--6630921	21	2.3	21	82	10	55	48	2	14	34	1.55
6631396--6631484	44	2.0	44	97	0	169	43	14	15	25	1.85
6639427--6639497	20	3.5	20	75	17	67	50	0	0	49	1.00
6639428--6639500	25	3.0	25	77	2	67	52	0	0	47	1.00
6639470--6639570	24	4.2	24	69	17	75	50	0	3	45	1.20
6639518--6639637	15	7.4	15	72	15	71	51	0	2	45	1.20
6639434--6639609	18	9.4	18	71	17	92	50	0	2	46	1.20
6639517--6639636	18	6.5	18	72	13	50	50	0	2	45	1.20
6639732--6639771	11	3.7	11	90	3	55	72	2	5	20	1.15
6640579--6640632	17	3.2	17	78	7	56	51	3	1	42	1.30
6640765--6640803	20	2.0	20	90	5	62	38	7	5	48	1.54
6641987--6642025	18	2.2	18	85	0	51	56	0	2	41	1.13
6641976--6642018	12	3.4	12	78	12	50	60	0	2	37	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6642756--6642834	27	3.1	25	76	14	81	31	3	7	56	1.45
6642757--6642857	23	4.2	23	75	12	78	33	5	6	53	1.52
6644762--6644800	20	2.0	19	85	14	53	38	5	5	51	1.46
6646126--6646154	14	2.1	14	100	0	58	65	6	13	13	1.45
6646135--6646172	15	2.4	16	86	4	51	78	5	10	5	1.06
6646144--6646197	26	2.1	25	83	10	65	83	3	5	7	0.91
6646149--6646195	19	2.4	19	83	13	60	85	4	4	6	0.84
6649748--6649851	22	4.8	22	72	4	77	42	2	14	40	1.60
6649868--6649932	22	3.0	22	73	8	60	49	10	6	33	1.63
6650011--6650069	22	2.7	22	83	0	73	45	5	10	38	1.60
6650163--6650212	21	2.3	22	80	10	59	52	10	6	32	1.59
6650111--6650354	22	11.2	22	67	4	64	50	6	9	34	1.59
6650369--6650441	22	3.3	22	80	0	65	49	6	5	38	1.53
6650240--6650441	44	4.7	43	70	4	129	51	4	7	35	1.51
6650486--6650541	22	2.5	22	82	0	67	46	19	5	28	1.72
6650846--6650944	22	4.5	22	72	7	69	51	5	11	32	1.59
6650932--6650975	21	2.0	22	86	4	63	38	0	11	50	1.39
6650985--6651156	22	7.8	22	64	8	62	47	5	9	37	1.61
6650987--6651083	44	2.2	44	81	10	108	48	6	9	36	1.60
6651088--6651168	43	1.9	42	84	2	108	43	4	12	39	1.64
6651261--6651325	22	2.9	22	81	6	69	44	7	9	38	1.65
6651272--6651332	22	2.8	22	75	9	61	45	8	8	37	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6651354--6651561	22	9.5	22	69	11	95	46	6	9	37	1.62
6651923--6652031	21	5.2	21	76	2	103	50	7	5	36	1.54
6651923--6652031	10	10.5	10	71	6	74	50	7	5	36	1.54
6654055--6654093	15	2.8	13	85	14	51	30	0	2	66	1.05
6654055--6654095	14	2.8	15	86	13	59	31	0	2	65	1.05
6660464--6660488	2	12.5	2	100	0	50	48	0	0	52	1.00
6663818--6663980	76	2.2	74	79	8	170	50	23	8	17	1.73
6664663--6664687	2	12.5	2	100	0	50	52	0	0	48	1.00
6674471--6674495	3	8.3	3	100	0	50	32	0	0	68	0.90
6679673--6679731	18	3.1	18	78	7	55	55	3	1	38	1.26
6679672--6679729	13	4.5	13	75	18	59	55	3	1	39	1.27
6685826--6685889	31	2.1	31	100	0	128	28	18	6	46	1.73
6689417--6689452	16	2.2	17	90	5	56	16	2	5	75	1.12
6690500--6690533	15	2.3	15	90	5	52	23	8	0	67	1.18
6690815--6691109	21	14.2	21	77	7	237	47	2	3	46	1.33
6690916--6690979	18	3.5	17	80	14	65	53	0	1	45	1.10
6690976--6691039	27	2.4	28	82	15	73	42	1	7	48	1.41
6690916--6691060	13	10.8	14	68	20	87	48	0	4	46	1.26
6691043--6691110	11	6.2	11	79	5	66	47	1	1	50	1.19
6691043--6691110	22	3.1	21	89	4	91	47	1	1	50	1.19
6691054--6691146	11	8.5	11	75	9	82	39	3	2	54	1.28
6691171--6691212	17	2.5	17	76	7	50	35	2	2	59	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6691296--6691365	22	3.2	22	78	11	72	35	2	7	54	1.43
6691314--6691457	11	13.8	11	69	17	67	36	3	3	56	1.33
6691354--6691416	29	2.2	29	82	0	72	39	3	1	55	1.25
6691378--6691413	18	2.0	18	88	0	54	50	0	2	47	1.15
6691423--6691555	21	6.6	21	66	15	66	43	2	1	52	1.22
6691480--6691512	11	3.1	11	86	8	50	42	0	0	57	0.98
6691482--6691627	29	5.0	29	77	3	139	43	1	1	53	1.17
6691528--6691570	22	2.0	22	85	0	59	44	2	2	51	1.27
6698446--6698490	12	3.8	12	82	5	56	71	2	13	13	1.25
6698450--6698492	11	3.8	11	84	6	59	72	2	11	13	1.22
6698443--6698499	23	2.5	23	75	8	55	73	3	10	12	1.21
6699165--6699212	23	2.1	23	84	7	62	29	14	14	41	1.85
6699746--6699775	15	2.0	15	100	0	60	40	6	20	33	1.78
6700107--6700253	65	2.3	64	82	4	170	27	17	6	49	1.69
6701612--6701660	25	1.9	26	87	4	73	53	4	2	40	1.32
6704912--6704953	19	2.2	19	83	8	50	26	4	2	66	1.23
6704965--6705011	14	3.4	14	84	0	58	57	4	4	34	1.38
6705726--6705750	13	1.9	13	100	0	50	48	8	0	44	1.32
6708175--6708216	16	2.7	15	88	7	57	35	0	2	61	1.09
6709353--6709420	25	2.7	25	80	8	75	26	27	25	20	1.99
6712589--6712624	17	2.1	18	89	5	56	63	5	0	30	1.17
6713216--6713251	2	19.5	2	83	16	51	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6713216--6713251	9	3.9	10	82	17	51	44	0	0	55	0.99
6713216--6713251	10	3.5	11	88	11	58	44	0	0	55	0.99
6717343--6717387	21	2.0	23	83	8	58	73	0	13	13	1.10
6720961--6721009	2	24.5	2	100	0	98	51	0	0	48	1.00
6725997--6726063	28	2.6	25	78	19	75	56	25	0	17	1.41
6726004--6726060	28	2.0	28	96	0	105	59	24	0	15	1.36
6727244--6727282	20	1.9	21	89	5	62	82	7	0	10	0.86
6727820--6727974	77	2.0	77	97	1	294	36	11	9	42	1.73
6727961--6727992	14	2.4	13	94	5	55	15	3	0	81	0.82
6729023--6729060	20	2.0	20	94	5	69	52	10	5	31	1.58
6729589--6729843	88	2.9	89	80	8	286	46	12	12	28	1.79
6729601--6729871	44	6.2	44	79	4	206	47	12	12	26	1.78
6730499--6730711	78	2.7	78	78	7	216	31	23	8	36	1.86
6731347--6731420	9	8.7	9	82	11	102	9	13	0	77	1.00
6731335--6731380	9	4.5	11	86	10	55	6	10	0	82	0.83
6731330--6731396	18	3.6	18	75	16	64	8	11	0	79	0.95
6731347--6731420	16	4.4	17	88	6	98	9	13	0	77	1.00
6737803--6737895	45	2.1	45	85	4	125	25	9	5	59	1.51
6737862--6738082	105	2.2	102	90	4	349	28	8	7	55	1.58
6737905--6738121	105	2.1	105	82	5	260	30	8	9	51	1.64
6739015--6739065	15	3.5	15	71	12	52	5	17	15	60	1.54
6739574--6739612	20	2.0	20	89	0	60	33	5	5	56	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6740365--6740402	14	2.6	14	91	4	58	28	0	10	60	1.30
6743440--6743464	12	2.1	12	100	0	50	32	0	0	68	0.90
6744390--6744437	23	2.2	21	81	7	51	50	2	4	43	1.33
6746581--6746829	129	2.0	126	81	4	293	46	4	10	38	1.60
6755640--6755743	52	2.0	52	88	0	154	28	23	7	40	1.82
6757022--6757364	63	5.5	61	71	17	204	33	13	9	43	1.76
6756936--6757374	187	2.3	186	81	5	510	33	13	10	42	1.79
6757071--6757303	126	1.9	124	82	7	292	34	14	9	41	1.79
6758954--6759676	375	1.9	375	95	0	1302	35	22	11	29	1.90
6767590--6767647	27	2.1	27	81	6	64	55	1	1	41	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147