genome.fa.s445.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  105  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19290323--19290354	3	10.7	3	100	0	64	68	0	0	31	0.90
19291228--19291287	26	2.3	26	94	0	102	28	21	1	48	1.60
19299280--19299326	15	3.3	15	85	11	71	65	0	0	34	0.93
19299292--19299351	22	2.7	22	80	7	77	66	1	3	28	1.17
19299832--19299872	20	2.0	22	85	9	59	53	2	12	31	1.51
19303886--19303914	3	9.7	3	100	0	58	68	0	0	31	0.89
19304356--19304406	26	2.0	25	88	3	75	74	0	3	21	0.98
19305696--19305796	6	16.7	6	72	16	66	18	5	1	73	1.14
19305696--19305746	23	2.2	24	89	10	79	13	5	1	78	1.02
19305696--19305796	19	5.6	18	76	14	66	18	5	1	73	1.14
19305709--19305796	13	7.2	12	75	15	58	19	5	1	73	1.09
19305726--19305794	25	2.8	25	80	10	70	21	5	1	71	1.16
19309704--19309736	10	3.3	10	95	0	57	87	0	9	3	0.63
19311072--19311209	45	3.1	44	75	9	127	36	10	12	40	1.78
19311314--19311360	19	2.5	19	89	0	67	25	14	14	44	1.84
19311348--19311383	17	2.1	17	94	0	63	36	19	11	33	1.87
19311283--19311462	53	3.4	53	81	6	184	30	16	12	40	1.86
19311418--19311533	36	3.2	36	70	13	112	33	12	9	43	1.75
19311445--19311758	19	17.2	19	77	5	166	28	11	14	46	1.78
19311418--19311555	72	1.9	70	89	2	213	34	12	10	43	1.76
19311302--19311610	125	2.5	125	83	1	368	31	14	12	41	1.84
19311540--19311753	38	5.8	38	81	5	242	25	11	15	47	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19311450--19311800	91	3.9	91	74	10	240	29	11	13	45	1.79
19311749--19311787	17	2.3	16	83	12	51	35	15	7	41	1.76
19311511--19311800	110	2.6	110	92	0	463	28	11	14	45	1.79
19313046--19313075	15	2.0	15	93	0	51	40	30	6	23	1.80
19319190--19319215	12	2.2	12	100	0	52	26	0	15	57	1.38
19322856--19322909	17	3.2	17	76	12	58	22	11	7	59	1.56
19328340--19328437	45	2.2	45	85	3	126	31	20	24	23	1.98
19334775--19334819	21	2.1	21	83	0	54	33	24	26	15	1.95
19337127--19337520	144	2.7	143	82	5	490	31	14	12	40	1.83
19338063--19338092	3	10.3	3	92	7	53	70	0	0	30	0.88
19347944--19347985	17	2.5	17	78	17	52	54	30	0	14	1.40
19348253--19348288	7	5.1	7	100	0	72	27	0	44	27	1.55
19348868--19348908	21	2.0	21	85	0	55	41	2	7	48	1.44
19348940--19348978	14	2.8	14	81	14	53	56	0	0	43	0.99
19348948--19348985	20	1.9	20	88	0	58	52	0	0	47	1.00
19349397--19349438	20	2.0	21	81	13	50	7	21	7	64	1.43
19350015--19350050	2	18.0	2	94	0	63	50	2	0	47	1.15
19350361--19350407	23	2.0	25	83	8	62	57	12	0	29	1.36
19356443--19356475	2	17.0	2	87	6	50	48	0	0	51	1.00
19357782--19357811	5	6.0	5	100	0	60	40	0	0	60	0.97
19357873--19357906	15	2.2	16	94	5	61	64	0	0	35	0.94
19359408--19359450	22	2.0	22	100	0	86	37	16	27	18	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19359914--19359973	30	2.0	30	96	0	111	58	3	0	38	1.15
19363511--19363560	25	2.0	25	100	0	100	44	12	8	36	1.71
19365281--19365306	6	4.3	6	100	0	52	84	0	0	15	0.62
19365597--19365641	21	2.1	21	84	8	56	48	2	2	46	1.26
19365605--19365661	21	2.8	20	81	7	69	47	0	0	52	1.00
19368371--19368420	22	2.3	22	92	0	82	36	12	24	28	1.91
19368518--19368557	21	1.9	21	89	0	62	7	15	2	75	1.14
19368876--19369176	99	3.0	102	83	7	416	23	8	25	41	1.83
19371199--19371248	24	2.1	24	84	0	64	38	4	4	54	1.38
19371950--19372012	16	3.8	16	77	8	63	26	14	12	46	1.80
19372623--19372662	20	1.9	19	85	14	53	60	10	2	27	1.42
19374809--19374860	27	1.9	27	84	0	68	38	15	15	30	1.88
19377993--19378080	42	2.1	42	81	8	99	57	10	4	27	1.51
19387509--19387562	27	2.0	27	100	0	108	44	14	14	25	1.84
19391547--19391585	20	1.9	21	89	5	62	48	28	0	23	1.51
19394178--19394222	22	2.0	22	100	0	90	33	17	13	35	1.89
19398884--19398963	33	2.5	32	76	15	92	57	2	0	40	1.12
19399894--19399959	33	2.0	33	87	0	96	45	10	22	21	1.82
19400163--19400188	11	2.4	11	100	0	52	0	15	0	84	0.62
19400649--19400683	3	11.7	3	93	0	61	68	2	0	28	1.04
19401539--19401611	29	2.4	30	81	6	85	50	4	2	42	1.35
19403724--19403763	16	2.5	16	87	0	53	42	22	0	35	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19403858--19403907	24	2.1	24	88	3	75	36	22	14	28	1.92
19405468--19405615	60	2.5	60	80	8	160	34	18	14	31	1.92
19405577--19405637	30	2.0	30	83	0	77	37	22	13	26	1.91
19405768--19405890	60	2.0	60	85	0	165	36	19	11	32	1.87
19405866--19405932	30	2.2	30	84	5	82	35	16	14	32	1.90
19406299--19406328	16	1.9	16	93	6	53	33	20	6	40	1.78
19407253--19407319	31	2.2	31	86	0	89	37	17	10	34	1.85
19408425--19408462	11	3.2	12	85	14	53	31	0	0	68	0.90
19409726--19409768	3	14.3	3	100	0	86	32	0	0	67	0.91
19410478--19410504	13	2.1	13	100	0	54	0	7	0	92	0.38
19414501--19414536	9	3.9	9	85	7	54	88	0	11	0	0.50
19414502--19414548	23	2.0	23	87	0	67	85	0	10	4	0.74
19414503--19414552	6	8.5	6	80	8	50	84	0	12	4	0.76
19415817--19415855	21	1.9	21	89	5	62	23	2	25	48	1.63
19416231--19416335	31	3.2	32	73	11	97	21	20	9	47	1.79
19416172--19416798	133	4.8	131	72	6	424	22	20	11	45	1.82
19422050--19422081	14	2.3	14	94	0	55	46	0	25	28	1.53
19422510--19422545	16	2.2	16	90	9	56	8	0	22	69	1.15
19422722--19422900	66	2.7	66	78	4	164	20	19	12	47	1.81
19423897--19423931	16	2.2	16	90	10	54	17	5	5	71	1.25
19423925--19423975	9	6.0	8	80	15	50	23	3	1	70	1.14
19427386--19427429	17	2.4	18	92	7	72	20	13	15	50	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19442894--19442945	21	2.5	21	83	0	68	26	5	32	34	1.80
19444317--19444360	22	2.0	22	91	8	72	45	13	9	31	1.75
19445817--19445860	22	2.0	22	90	0	70	29	11	13	45	1.79
19447266--19447307	22	1.9	22	90	0	66	28	9	14	47	1.75
19447450--19447499	24	2.1	23	82	14	57	20	20	8	52	1.71
19452653--19452696	22	2.0	22	100	0	88	31	13	13	40	1.84
19456583--19456626	22	2.0	22	90	0	70	34	9	13	43	1.76
19459230--19459394	88	1.9	88	82	6	210	24	12	18	44	1.85
19462716--19462771	14	4.3	13	78	17	55	51	0	0	48	1.00
19462753--19462813	28	2.2	27	82	2	68	50	3	0	45	1.17
19466438--19466496	30	2.0	30	93	6	102	57	5	8	28	1.50
19468688--19468756	30	2.3	30	85	2	95	52	7	5	34	1.53
19469069--19469103	17	2.0	18	88	5	54	31	2	0	65	1.07
19474287--19474334	3	16.3	3	95	4	89	0	31	0	68	0.90
19475560--19475606	16	2.9	16	71	22	53	14	8	6	70	1.32
19475661--19475685	5	5.0	5	100	0	50	0	0	20	80	0.72
19476163--19476316	78	2.0	78	98	0	299	43	7	7	40	1.62
19479564--19479590	2	13.5	2	100	0	54	48	0	0	51	1.00
19480369--19480407	11	3.5	11	85	3	51	56	0	2	41	1.13
19482428--19482486	12	4.7	13	72	20	54	55	0	1	42	1.09
19482426--19482486	24	2.4	25	86	5	79	55	0	1	42	1.09
19482581--19482634	10	5.5	10	75	4	56	53	3	9	33	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19482580--19482640	29	2.1	29	90	0	95	54	3	8	34	1.47
19482590--19482652	29	2.2	29	85	0	81	53	3	7	34	1.46
19482916--19483020	47	2.2	48	78	13	110	48	1	4	44	1.34
19486186--19486247	4	15.2	4	77	15	65	70	3	0	25	1.02
19486162--19486255	34	2.8	34	82	10	97	67	8	0	24	1.19
19486189--19486243	15	3.7	15	82	4	67	70	3	0	25	1.03
19486186--19486247	19	3.2	20	77	11	76	70	3	0	25	1.02
19486250--19486289	14	2.9	14	82	14	55	67	5	2	25	1.23
19486455--19486508	23	2.3	23	81	12	58	72	3	7	16	1.22
19486479--19486513	8	4.5	8	89	3	54	77	0	8	14	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147