genome.fa.s445.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  142  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26298179--26298209	14	2.3	14	94	5	55	19	0	0	80	0.71
26304472--26304534	31	2.0	32	84	9	85	44	1	4	49	1.33
26308384--26308487	22	4.8	21	75	12	86	53	4	5	35	1.46
26308423--26308488	22	3.0	21	88	4	87	56	3	6	34	1.40
26308423--26308480	21	2.8	20	87	12	82	56	3	6	32	1.42
26308517--26308565	22	2.2	22	85	7	64	63	10	4	22	1.43
26308517--26308598	22	3.8	22	76	10	62	57	9	4	28	1.51
26308612--26308728	22	5.4	22	74	6	112	49	5	10	34	1.61
26308612--26308733	44	2.8	45	80	5	160	50	5	10	33	1.61
26309045--26309302	22	11.6	21	68	18	98	50	5	7	36	1.54
26309240--26309311	22	3.3	22	72	18	69	54	6	5	33	1.51
26309446--26309500	22	2.6	22	83	11	71	50	7	7	34	1.58
26309580--26309717	22	6.3	22	81	0	132	44	4	10	41	1.58
26309579--26309710	44	3.0	44	78	0	147	43	4	10	40	1.59
26309730--26309882	22	7.0	22	73	7	73	47	7	5	39	1.53
26309718--26309900	44	4.2	43	74	14	142	46	6	6	40	1.54
26309841--26309909	22	3.2	21	85	4	84	46	7	10	36	1.65
26309869--26309920	22	2.4	21	83	3	68	50	3	13	32	1.60
26310354--26310462	22	5.0	22	77	6	62	44	10	6	38	1.64
26310389--26310503	11	10.5	11	69	5	72	48	7	3	40	1.49
26310367--26310505	66	2.1	66	84	7	176	47	10	4	38	1.57
26310407--26310540	44	3.0	42	75	8	124	50	8	4	36	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26310408--26310538	22	6.0	22	73	12	99	49	9	4	36	1.55
26310403--26310527	66	1.9	65	83	8	164	48	8	4	37	1.55
26310474--26310534	11	5.5	11	78	7	52	57	4	3	34	1.36
26311080--26311141	21	2.8	21	77	20	63	19	3	1	75	1.02
26311106--26311150	21	2.1	21	88	8	65	17	4	2	75	1.07
26312894--26313155	58	4.5	59	80	11	265	46	4	9	38	1.59
26312894--26313154	118	2.2	116	82	10	293	45	4	9	39	1.59
26315027--26315064	18	2.1	18	90	9	60	81	0	7	10	0.87
26315108--26315140	16	2.1	16	100	0	66	75	6	6	12	1.16
26320688--26320976	154	1.9	154	88	4	440	38	13	8	39	1.75
26328677--26328747	25	2.9	25	78	12	67	47	0	0	52	1.00
26328716--26328761	19	2.3	21	85	11	69	47	0	0	52	1.00
26329413--26329463	26	2.0	25	96	3	93	50	0	15	33	1.44
26330163--26330197	3	11.7	3	100	0	70	34	0	0	65	0.93
26346840--26346887	12	3.9	12	81	8	53	33	0	0	66	0.92
26346863--26346936	30	2.5	30	75	4	78	40	1	1	56	1.16
26346903--26346976	21	3.5	22	87	9	109	48	0	0	51	1.00
26346913--26346976	21	2.9	23	90	9	114	48	0	0	51	1.00
26346903--26346977	22	3.5	21	79	15	91	48	0	0	52	1.00
26350691--26350941	126	2.0	126	99	0	495	33	12	17	35	1.88
26357843--26357980	52	2.7	52	83	1	170	47	5	16	30	1.68
26359723--26359769	6	7.8	6	90	0	76	34	4	17	44	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26377463--26377529	32	2.1	32	97	0	125	31	23	16	28	1.96
26381414--26381478	34	1.9	33	87	3	94	26	15	26	32	1.95
26381560--26381651	48	1.9	48	88	2	141	35	2	16	45	1.59
26386708--26386799	48	1.9	47	84	2	121	36	4	16	42	1.68
26388839--26388897	23	2.5	24	75	8	68	45	3	0	50	1.18
26391290--26391346	21	2.7	22	86	5	82	42	7	3	47	1.47
26391295--26391360	22	3.1	21	81	10	64	36	6	4	53	1.46
26392015--26392099	22	3.9	22	72	13	68	32	10	4	51	1.57
26392112--26392189	22	3.6	22	74	10	70	43	11	1	43	1.48
26392091--26392194	43	2.4	44	78	1	120	43	13	1	41	1.55
26392222--26392468	22	11.2	22	74	6	169	36	9	5	48	1.58
26392207--26392316	44	2.4	45	73	14	118	35	9	6	49	1.60
26392222--26392380	67	2.4	65	80	6	176	38	10	4	46	1.58
26392216--26392428	111	1.9	110	82	0	264	38	9	5	46	1.58
26392670--26392793	22	5.6	22	77	4	106	38	6	6	48	1.55
26392670--26392805	44	3.1	44	80	6	141	38	5	5	49	1.51
26392707--26392805	22	4.5	21	81	6	92	39	5	5	50	1.46
26392991--26393440	22	20.5	22	66	8	126	35	10	6	47	1.63
26393152--26393376	44	5.1	44	73	6	172	36	10	6	46	1.64
26393470--26393528	11	5.5	11	80	8	59	37	3	3	55	1.33
26393488--26393582	22	4.3	22	78	0	100	35	5	4	54	1.42
26397396--26397424	13	2.3	13	94	5	51	51	3	0	44	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26397939--26397988	2	25.0	2	95	0	91	52	0	0	48	1.00
26400519--26400562	23	1.9	23	81	9	54	54	0	0	45	0.99
26400543--26400601	16	3.7	16	84	6	84	66	1	0	32	1.02
26404398--26404428	2	15.5	2	100	0	62	51	48	0	0	1.00
26412167--26412218	22	2.5	22	93	6	90	50	0	0	50	1.00
26412647--26412778	65	2.0	65	86	0	183	18	28	6	46	1.75
26414425--26414467	15	2.9	15	85	0	50	30	25	4	39	1.76
26416962--26416987	12	2.2	12	100	0	52	30	0	0	69	0.89
26417292--26417344	23	2.3	23	81	12	65	20	5	1	71	1.16
26430959--26431184	51	4.3	53	70	15	141	27	16	13	42	1.85
26432267--26432510	122	2.0	122	97	0	461	36	17	11	34	1.86
26432267--26432638	122	3.0	125	85	4	398	35	15	12	35	1.86
26436181--26436214	3	11.0	3	87	6	50	29	0	67	2	1.05
26441416--26441480	32	2.0	32	90	0	103	38	24	13	23	1.91
26447835--26447880	18	2.5	19	79	10	51	45	0	43	10	1.39
26449039--26449071	2	16.5	2	100	0	66	51	48	0	0	1.00
26450361--26450421	22	3.0	20	80	19	65	45	0	1	52	1.10
26450634--26450673	19	2.0	20	85	4	55	50	2	2	45	1.28
26451591--26451635	21	2.1	22	87	4	65	40	0	0	60	0.97
26459533--26459571	11	3.5	11	82	0	51	48	0	2	48	1.15
26459522--26459570	22	2.2	20	77	19	53	46	0	2	51	1.12
26459573--26459645	33	2.2	35	78	14	82	39	6	8	45	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26460698--26460729	2	16.5	2	93	6	57	50	0	0	50	1.00
26468514--26468549	18	1.9	19	94	5	65	38	25	5	30	1.78
26483946--26483981	18	2.0	18	100	0	72	61	0	0	38	0.96
26484102--26484144	20	2.3	19	92	8	70	32	0	0	67	0.91
26484102--26484145	10	4.7	9	81	18	54	34	0	0	65	0.93
26484173--26484216	22	1.9	24	90	9	74	50	0	0	50	1.00
26485008--26485046	2	19.5	2	94	0	69	48	2	0	48	1.15
26490158--26490216	29	2.0	29	90	0	91	44	1	3	50	1.28
26492802--26492841	21	1.9	21	84	0	53	47	10	5	37	1.59
26495394--26495425	2	16.0	2	93	0	55	46	0	0	53	1.00
26495668--26495732	30	2.2	30	83	5	78	56	4	1	36	1.29
26495746--26495833	24	3.8	22	73	19	65	47	2	0	50	1.13
26495793--26495855	24	2.6	23	73	9	63	50	0	0	49	1.00
26496436--26496514	38	2.1	38	81	9	90	32	5	15	46	1.67
26497801--26497868	13	5.5	13	74	11	54	30	2	0	66	1.07
26497803--26497860	11	5.2	11	82	10	55	29	3	0	67	1.07
26498647--26498685	16	2.6	15	88	8	53	66	0	0	33	0.92
26499577--26499650	29	2.6	29	82	0	85	54	13	9	22	1.68
26499601--26499663	29	2.2	29	79	0	72	50	11	11	26	1.71
26501982--26502014	2	16.5	2	100	0	66	48	0	0	51	1.00
26507713--26507756	23	2.0	21	86	8	61	56	2	2	38	1.24
26517502--26517548	20	2.4	20	75	10	53	72	2	0	25	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26517602--26517642	18	2.3	18	86	0	55	58	0	0	41	0.98
26519828--26519863	2	18.5	2	94	5	65	47	0	0	52	1.00
26520770--26520824	24	2.3	24	84	6	67	49	9	7	34	1.62
26526196--26526237	9	4.7	9	77	11	50	66	2	0	30	1.04
26532451--26532488	17	2.2	17	90	0	58	84	2	10	2	0.83
26540132--26540231	50	2.0	50	82	9	123	46	30	11	13	1.77
26541772--26541860	44	2.0	44	93	0	151	32	14	8	43	1.77
26545781--26545961	64	2.8	62	75	9	166	41	9	14	34	1.79
26546099--26546279	64	2.9	59	77	13	191	39	12	14	33	1.84
26546385--26546439	24	2.2	26	81	12	71	49	23	1	25	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147