genome.fa.s445.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  90  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16559696--16559914	31	6.9	31	69	5	125	32	18	18	30	1.95
16559990--16560111	31	3.9	31	75	5	120	39	19	15	25	1.91
16560047--16560221	95	1.8	95	81	0	215	36	17	17	28	1.93
16560654--16560791	51	2.7	52	79	3	154	30	11	13	44	1.80
16561285--16561657	145	2.6	143	80	8	405	31	11	14	42	1.81
16563507--16563571	20	3.3	19	86	4	76	44	36	3	15	1.62
16563515--16563573	19	3.0	19	87	5	64	42	40	3	13	1.61
16563851--16563946	19	4.9	19	77	13	88	50	33	0	16	1.46
16563917--16563964	12	4.0	11	77	17	51	50	43	0	6	1.27
16563917--16563964	24	2.0	24	87	0	69	50	43	0	6	1.27
16563935--16563979	18	2.4	18	88	3	63	48	46	0	4	1.22
16563924--16563977	24	2.2	25	83	3	65	48	44	0	7	1.31
16567655--16567688	14	2.3	15	90	5	52	35	0	0	64	0.94
16569961--16569987	14	1.9	14	100	0	54	14	3	0	81	0.82
16570149--16570186	13	3.0	13	84	3	51	42	2	0	55	1.14
16571116--16571170	20	2.9	19	81	5	58	74	5	1	18	1.10
16574977--16575017	15	2.7	15	84	0	55	14	9	21	53	1.70
16576569--16576737	70	2.4	71	81	3	182	42	15	11	30	1.83
16576739--16576836	50	2.0	50	87	0	142	42	13	11	32	1.79
16576738--16576848	50	2.2	50	83	0	141	43	14	9	32	1.78
16581937--16581992	2	28.0	2	100	0	112	0	50	0	50	1.00
16581992--16582020	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16582103--16582163	27	2.3	26	81	10	63	18	16	14	50	1.78
16586891--16586932	22	1.9	22	90	0	66	47	0	0	52	1.00
16587771--16587854	29	2.8	30	82	5	100	46	3	10	39	1.56
16587781--16587876	29	3.3	30	79	5	90	47	3	8	40	1.49
16588518--16588558	2	20.5	2	100	0	82	0	0	48	51	1.00
16597775--16597837	22	3.0	21	68	13	56	41	9	17	31	1.82
16597852--16598209	86	4.2	86	76	4	276	43	15	16	23	1.87
16597804--16598145	129	2.6	128	78	4	355	43	14	17	25	1.86
16597751--16598145	43	9.2	43	75	5	244	43	13	18	24	1.86
16597723--16598202	43	11.1	43	75	3	149	43	13	17	25	1.86
16597852--16598210	43	8.3	43	72	8	151	43	15	16	23	1.87
16598066--16598255	86	2.2	86	80	7	208	43	17	15	23	1.87
16599272--16599301	16	1.9	15	93	6	51	26	13	20	40	1.89
16605465--16605506	21	2.0	22	90	4	68	35	0	30	33	1.58
16607971--16608017	20	2.5	20	80	16	55	46	0	2	51	1.13
16615758--16615950	101	1.9	100	90	1	305	29	9	20	40	1.83
16617932--16617979	16	3.1	16	87	6	71	12	2	4	81	0.93
16617932--16618003	16	4.6	15	76	13	65	16	1	4	77	0.99
16617977--16618079	4	24.8	4	69	20	52	29	0	3	66	1.16
16617932--16618109	16	10.7	16	68	18	55	23	1	4	70	1.15
16618484--16618520	19	1.9	19	88	0	56	29	5	16	48	1.68
16619048--16619124	11	6.8	11	77	14	68	12	5	2	79	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16619048--16619127	5	15.4	5	73	19	58	13	5	2	78	1.01
16619047--16619119	6	11.7	6	73	13	58	13	5	1	79	0.97
16619044--16619119	40	1.9	40	83	5	100	13	6	1	78	0.99
16619047--16619130	13	6.7	12	74	20	57	14	4	2	78	1.01
16619154--16619610	57	7.7	57	81	10	524	44	7	12	35	1.71
16619164--16619610	122	3.7	119	89	4	654	44	7	12	35	1.71
16623359--16623403	20	2.2	21	88	4	65	53	8	2	35	1.45
16623860--16623899	3	13.3	3	89	0	53	67	7	0	25	1.16
16623860--16623928	18	3.9	18	72	11	54	60	8	1	28	1.35
16623889--16623942	18	3.1	17	76	23	51	51	7	5	35	1.53
16637932--16637970	13	2.9	13	88	3	60	82	7	7	2	0.94
16637940--16637987	12	4.0	12	82	17	64	81	8	8	2	0.96
16639025--16639345	143	2.3	143	79	5	321	33	12	14	40	1.83
16640729--16640806	6	12.5	6	78	17	79	50	30	1	17	1.55
16640732--16640940	13	16.5	13	67	17	84	45	35	1	17	1.59
16640813--16640899	33	2.6	33	94	0	147	43	40	0	16	1.47
16647994--16648022	3	9.7	3	100	0	58	68	0	0	31	0.89
16648032--16648077	23	2.0	23	87	8	67	76	2	0	21	0.90
16652446--16652492	13	3.5	13	77	13	51	76	19	0	4	0.95
16652458--16652502	22	2.0	22	86	0	63	73	20	4	2	1.11
16654803--16654856	25	2.2	23	78	12	54	53	25	0	20	1.45
16654817--16654876	30	2.0	30	86	0	84	48	28	0	23	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16654813--16654874	24	2.5	24	84	7	72	48	29	0	22	1.51
16654871--16654913	21	2.1	21	82	4	52	51	32	4	11	1.59
16654917--16654995	7	12.3	7	75	12	55	48	35	0	16	1.47
16654899--16654982	6	13.5	6	74	20	52	47	35	0	16	1.47
16654921--16654995	13	5.9	13	73	18	61	46	36	0	17	1.48
16654813--16654982	13	13.5	12	68	19	66	47	32	1	18	1.57
16654946--16655005	26	2.3	27	85	5	79	43	35	1	20	1.62
16658660--16658691	15	2.1	15	100	0	64	43	6	6	43	1.54
16665038--16665314	62	4.5	59	68	15	150	42	10	12	34	1.77
16664971--16665808	371	2.3	373	83	5	1063	41	12	11	34	1.79
16664971--16665792	186	4.4	186	82	3	953	41	11	11	34	1.79
16690951--16691062	50	2.2	49	82	6	136	39	5	8	47	1.56
16697317--16697418	39	2.6	40	80	3	125	40	18	11	29	1.86
16699698--16699724	3	9.0	3	100	0	54	33	0	0	66	0.92
16700791--16700867	40	1.9	40	84	5	102	41	15	11	31	1.83
16705507--16705542	18	1.9	18	88	5	54	0	13	2	83	0.76
16705502--16705535	17	1.9	18	88	5	52	0	17	2	79	0.86
16705814--16705861	20	2.5	20	86	6	64	2	18	0	79	0.84
16705805--16705868	31	2.0	32	81	6	76	3	21	1	73	1.06
16707151--16707193	12	3.6	12	77	0	50	32	11	23	32	1.90
16707146--16707207	16	3.9	16	78	0	61	38	9	22	29	1.86
16707147--16707205	8	7.9	8	72	14	54	35	10	23	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16708455--16708480	12	2.2	12	100	0	52	50	15	7	26	1.71
16708444--16708535	34	2.7	34	84	1	103	52	13	4	30	1.59
16708430--16708501	18	4.1	18	70	13	60	51	16	4	27	1.63
16708508--16708555	23	2.1	23	96	0	87	58	14	0	27	1.37
16708597--16708644	18	2.7	18	78	12	53	56	14	2	27	1.50
16708624--16708799	24	7.6	24	73	13	154	53	10	3	31	1.52
16708598--16708796	47	4.5	42	70	18	138	53	11	3	31	1.53
16708598--16708831	66	3.5	65	83	10	278	53	10	3	32	1.52
16708775--16708864	20	4.6	20	76	13	89	53	8	5	32	1.55
16708804--16708931	16	7.2	17	72	14	73	53	10	7	28	1.62
16708602--16708945	24	16.9	20	70	18	71	52	10	5	31	1.58
16708853--16708959	52	2.1	50	80	11	121	52	8	8	30	1.61
16710122--16710151	13	2.2	14	94	5	53	20	23	26	30	1.98
16711186--16711215	6	5.0	6	95	0	51	66	30	0	3	1.07
16717291--16717347	17	3.4	17	68	7	53	57	7	5	29	1.47
16718033--16718099	33	2.0	33	100	0	134	50	17	13	17	1.77
16721491--16721542	22	2.4	22	90	3	79	13	19	3	63	1.44
16722266--16722355	33	2.7	33	77	3	92	26	18	11	43	1.84
16722171--16722502	132	2.5	133	78	1	335	25	16	12	45	1.83
16722578--16722653	33	2.3	33	83	0	89	38	18	3	39	1.69
16726319--16726363	23	2.0	23	82	8	56	26	8	2	62	1.37
16726590--16726631	21	2.0	21	86	9	59	7	9	4	78	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16727246--16727277	7	4.6	7	100	0	64	46	0	0	53	1.00
16730060--16730119	24	2.6	24	80	15	81	60	5	5	30	1.40
16731297--16731329	16	1.9	18	88	11	52	54	0	0	45	0.99
16734855--16734948	6	15.0	6	75	9	55	24	2	2	71	1.08
16734864--16735039	23	7.7	23	68	22	77	23	5	1	69	1.18
16734864--16734935	39	1.9	39	88	8	114	26	2	1	69	1.10
16734870--16735007	33	4.2	30	74	12	96	23	5	1	69	1.16
16734909--16735030	24	5.4	23	70	21	71	23	5	1	68	1.20
16734963--16735032	17	4.1	17	75	15	63	25	7	1	65	1.26
16734933--16735036	47	2.1	51	78	18	114	22	6	1	69	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147