genome.fa.s445.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  18  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3904879--3904953	26	2.8	26	76	9	80	50	34	0	14	1.43
3912622--3913470	160	5.3	159	80	5	667	44	13	9	32	1.76
3912634--3913471	319	2.6	321	77	5	768	44	13	9	32	1.77
3913931--3913969	18	2.2	18	95	0	69	38	20	20	20	1.94
3915514--3915660	51	2.9	51	79	3	170	36	19	7	36	1.80
3915730--3915779	9	5.9	9	81	9	61	76	0	2	22	0.89
3916082--3916154	34	2.1	34	82	7	83	32	19	4	43	1.70
3916101--3916167	34	2.0	34	84	0	89	31	20	4	43	1.72
3917234--3917346	26	4.3	26	73	12	88	46	34	0	18	1.56
3917234--3917356	7	19.0	7	68	17	61	46	34	0	17	1.54
3917234--3917356	19	6.4	19	67	16	74	46	34	0	17	1.54
3917425--3917460	18	1.9	19	88	5	56	27	16	11	44	1.82
3918109--3918229	42	2.9	42	96	0	215	43	11	12	32	1.78
3918726--3918807	28	3.1	26	77	10	85	17	25	28	29	1.97
3918705--3918807	54	1.9	54	82	4	127	18	24	26	31	1.98
3926184--3926325	69	2.0	70	87	1	205	42	14	10	33	1.79
3937369--3937412	11	3.8	11	80	11	52	70	0	2	27	0.99
3938875--3938903	7	4.3	7	91	8	51	0	13	0	86	0.58
3938875--3938903	13	2.1	14	93	6	51	0	13	0	86	0.58
3939164--3939210	24	2.0	23	84	12	60	44	0	2	53	1.12
3942105--3942154	20	2.5	20	83	6	57	28	2	0	70	0.99
3942181--3942205	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3942566--3942590	10	2.5	10	100	0	50	8	12	32	48	1.69
3943887--3944085	38	5.4	36	71	8	130	52	14	15	17	1.75
3943907--3944046	73	1.9	73	82	4	174	52	17	15	15	1.76
3944208--3944289	33	2.5	33	82	9	87	31	9	20	37	1.85
3944302--3944427	33	3.8	33	80	6	130	36	19	16	27	1.93
3944347--3944527	34	5.4	34	75	10	129	34	16	17	31	1.92
3944302--3944461	67	2.4	67	81	2	162	36	18	16	28	1.93
3944356--3944512	33	4.6	34	75	9	106	35	16	17	30	1.92
3946393--3946427	18	1.9	18	88	0	52	5	8	2	82	0.91
3947053--3947101	7	7.1	7	88	4	73	10	0	4	85	0.71
3948765--3948810	4	11.5	4	84	9	58	47	2	23	26	1.63
3952297--3952326	14	2.1	14	93	0	51	23	0	30	46	1.52
3952311--3952411	15	6.7	15	70	20	68	16	0	32	49	1.53
3952367--3952410	17	2.8	16	83	10	56	13	2	38	45	1.56
3952436--3952500	30	2.3	27	87	12	87	21	1	32	44	1.62
3952436--3952500	14	4.5	15	73	17	59	21	1	32	44	1.62
3952518--3952552	16	2.2	16	94	0	61	25	0	25	48	1.51
3952814--3952862	22	2.2	21	79	10	53	32	2	2	63	1.17
3953087--3953139	3	17.3	3	96	3	97	32	0	0	67	0.91
3956286--3956319	4	8.2	4	87	6	50	23	0	0	76	0.79
3956287--3956319	17	1.9	17	93	0	57	21	0	0	78	0.75
3957244--3957690	224	2.0	223	91	0	732	44	7	9	38	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3958164--3958229	34	1.9	34	81	6	80	33	7	13	45	1.72
3958186--3958257	34	2.1	34	81	0	81	30	12	9	47	1.74
3959098--3959133	3	12.0	3	100	0	72	33	0	0	66	0.92
3959479--3959515	3	12.3	3	100	0	74	32	0	0	67	0.91
3961195--3961268	30	2.4	30	84	8	96	35	9	2	52	1.48
3965156--3965195	18	2.3	17	82	4	53	15	7	0	77	0.98
3965173--3965201	14	2.0	15	93	6	51	13	6	3	75	1.13
3967152--3967191	14	2.9	13	85	7	53	72	10	0	17	1.11
3967152--3967184	13	2.4	14	90	5	50	72	9	0	18	1.10
3967590--3967664	31	2.4	31	82	12	100	36	9	4	50	1.53
3969224--3969252	2	14.5	2	100	0	58	51	0	0	48	1.00
3970684--3970713	1	30.0	1	93	0	51	96	0	3	0	0.21
3976191--3976372	95	1.9	95	87	0	265	35	13	18	32	1.89
3982613--3982715	33	3.3	33	75	18	112	22	0	19	58	1.40
3982635--3982689	26	2.1	26	90	6	85	16	0	21	61	1.34
3983992--3984025	16	2.1	16	89	10	52	50	11	14	23	1.76
3987696--3987727	15	2.1	16	94	5	57	78	0	18	3	0.89
3987727--3987768	3	14.0	3	89	0	66	35	2	30	30	1.71
3988240--3988285	21	2.2	21	88	7	67	30	8	10	50	1.68
4001588--4001719	66	2.0	66	88	2	194	38	11	5	44	1.63
4005460--4005563	4	25.2	4	71	16	52	28	2	1	66	1.17
4005412--4005563	17	9.3	16	66	22	68	29	3	3	63	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4005519--4005560	14	3.2	13	83	12	50	30	0	0	69	0.89
4005527--4005607	21	3.9	21	78	10	78	25	3	3	66	1.25
4005621--4005672	21	2.5	21	84	12	79	9	13	7	69	1.37
4006515--4006541	4	6.8	4	100	0	54	25	0	0	74	0.83
4006564--4006627	6	11.5	6	76	15	57	14	4	1	79	0.96
4006554--4006650	38	2.5	39	82	12	121	16	5	2	76	1.06
4006564--4006649	11	7.8	11	75	19	65	13	4	2	79	1.00
4006564--4006635	17	4.5	15	83	11	74	13	4	2	79	1.00
4006575--4006650	33	2.1	36	81	11	86	14	3	2	78	1.00
4006661--4007055	58	6.7	57	85	6	459	44	7	13	34	1.72
4006661--4007057	176	2.2	177	84	4	523	44	7	13	34	1.72
4017343--4017697	177	2.0	174	85	4	471	21	23	20	33	1.97
4018782--4018822	2	20.5	2	100	0	82	0	48	0	51	1.00
4025294--4025331	20	1.9	20	88	0	58	57	10	7	23	1.58
4025273--4025368	47	2.0	47	87	0	138	57	9	9	23	1.59
4029737--4029943	54	3.8	52	74	12	170	31	10	5	53	1.57
4029742--4029848	49	2.2	49	83	3	126	29	9	3	57	1.48
4029731--4029943	58	4.0	53	74	16	129	31	9	5	52	1.58
4029796--4029967	58	3.0	55	73	15	138	34	9	5	50	1.59
4029890--4030047	79	2.0	81	87	6	234	39	5	5	48	1.51
4029905--4030066	78	2.1	77	80	12	179	40	5	4	48	1.48
4029851--4030179	139	2.4	137	84	7	407	35	7	6	50	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4029969--4030116	61	2.5	60	88	8	214	35	6	4	54	1.44
4030094--4030135	19	2.2	19	95	0	75	21	0	4	73	1.01
4030278--4030331	3	17.3	3	88	3	72	66	1	1	29	1.12
4030585--4030609	13	1.9	13	100	0	50	4	24	0	72	1.02
4034477--4034507	4	7.8	4	92	0	53	22	3	0	74	0.96
4038271--4038295	3	8.3	3	100	0	50	32	0	0	68	0.90
4038383--4038420	2	18.5	2	89	5	58	47	2	2	47	1.30
4041550--4041588	20	2.0	20	94	0	69	33	5	23	38	1.77
4043171--4043196	9	2.9	9	100	0	52	11	11	30	46	1.76
4049532--4049565	16	2.1	16	94	0	59	47	5	8	38	1.59
4050567--4050641	37	2.0	37	94	0	132	41	24	5	29	1.77
4053795--4053834	20	2.0	20	100	0	80	15	15	15	55	1.71
4058027--4058056	2	15.0	2	100	0	60	50	0	0	50	1.00
4061730--4061766	2	18.5	2	100	0	74	0	51	0	48	1.00
4064886--4064943	29	2.0	29	96	0	107	53	13	3	29	1.56
4066478--4066538	30	2.0	31	83	6	79	27	9	3	59	1.45
4066818--4066862	20	2.2	21	88	7	67	26	0	0	73	0.84
4068568--4068600	14	2.4	14	90	5	50	12	12	0	75	1.04
4087468--4087522	21	2.6	21	88	0	83	23	14	16	45	1.84
4087587--4088031	235	1.9	234	89	2	698	27	13	18	40	1.88
4090470--4090513	22	2.0	22	90	0	70	43	11	11	34	1.77
4090473--4090525	22	2.4	22	81	6	54	49	7	11	32	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4094074--4094121	23	2.1	23	81	11	55	41	0	20	37	1.53
4096016--4096077	30	2.1	30	90	6	99	32	16	20	30	1.95
4096400--4096469	34	2.1	34	83	5	88	38	10	12	38	1.77
4098804--4098836	17	1.9	17	100	0	66	24	24	6	45	1.75
4100431--4100621	102	1.9	104	81	4	235	27	17	7	47	1.75
4102397--4102438	17	2.5	17	77	14	50	59	4	0	35	1.19
4102568--4102716	79	1.9	78	82	5	187	52	15	10	22	1.72
4102679--4102744	31	2.1	31	83	5	80	46	18	15	19	1.83
4103915--4103970	12	4.9	11	78	12	51	80	1	8	8	0.98
4103936--4103970	12	2.9	12	87	12	54	82	0	8	8	0.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147