genome.fa.s445.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  54  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10432760--10432812	24	2.3	23	83	3	61	58	0	0	41	0.98
10432752--10432818	23	3.0	23	77	10	68	59	0	0	40	0.97
10436097--10436138	19	2.4	17	80	11	50	42	0	7	50	1.30
10436378--10436433	22	2.5	23	80	14	71	55	3	3	37	1.35
10438804--10438838	2	17.5	2	93	0	61	48	0	2	48	1.16
10445784--10445820	2	18.5	2	94	0	65	48	2	0	48	1.15
10448442--10448477	18	1.9	18	88	5	54	25	0	5	69	1.10
10448472--10448504	14	2.4	14	90	10	50	42	3	0	54	1.15
10450186--10450259	37	2.0	38	81	7	89	51	0	0	48	1.00
10450252--10450297	21	2.1	22	84	4	58	41	0	0	58	0.98
10450682--10450748	11	5.6	12	72	19	50	46	1	7	44	1.40
10450679--10450738	25	2.5	23	75	17	59	46	1	8	43	1.43
10450679--10450746	13	5.8	11	75	20	50	45	1	7	45	1.40
10450741--10450818	40	2.0	40	97	0	147	34	8	8	47	1.66
10451204--10451237	15	2.4	14	90	5	50	58	0	0	41	0.98
10451225--10451267	9	4.5	10	82	8	54	76	0	0	23	0.78
10451225--10451267	5	9.0	5	80	10	54	76	0	0	23	0.78
10451225--10451267	14	3.0	14	80	16	52	76	0	0	23	0.78
10451200--10451258	14	4.4	14	70	12	52	66	0	0	33	0.92
10451228--10451265	18	2.1	18	90	9	60	76	0	0	23	0.79
10451465--10451512	24	2.0	24	84	4	62	47	4	4	43	1.41
10455909--10455973	26	2.5	26	87	0	76	26	26	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10456014--10456049	3	12.3	3	88	5	56	33	0	2	63	1.08
10456948--10456993	19	2.5	19	89	3	67	13	4	2	80	0.95
10457118--10457168	23	2.2	23	86	6	68	62	5	1	29	1.29
10457188--10457243	20	2.9	18	75	19	51	57	7	3	32	1.43
10458413--10458636	115	1.9	115	80	7	258	23	15	24	36	1.94
10459303--10459340	19	2.0	19	94	0	67	50	21	2	26	1.62
10467226--10467440	116	1.9	116	83	3	281	28	18	18	34	1.95
10470006--10470054	26	1.9	25	83	4	62	40	2	2	55	1.23
10470457--10470523	30	2.2	29	85	12	91	37	14	2	44	1.61
10471310--10471379	35	2.0	35	88	5	106	32	7	5	54	1.51
10473104--10473224	54	2.2	54	85	0	161	23	19	18	38	1.93
10473500--10474102	300	2.0	300	95	0	1073	37	15	12	34	1.85
10481727--10481774	21	2.2	21	89	10	71	50	6	8	35	1.58
10488411--10488444	2	17.5	2	87	6	52	50	2	0	47	1.16
10491939--10492120	74	2.5	73	85	1	247	24	20	20	34	1.96
10492382--10492982	301	2.0	301	93	1	1035	37	14	13	34	1.86
10509475--10509529	22	2.4	23	82	11	69	38	0	5	56	1.23
10511483--10511548	31	2.2	31	83	8	82	51	0	0	48	1.00
10511508--10511542	13	2.6	14	91	8	56	51	0	0	48	1.00
10511486--10511542	11	4.5	13	77	22	68	47	0	0	52	1.00
10511488--10511559	36	2.0	37	81	8	85	52	0	0	47	1.00
10511552--10511597	21	2.1	22	84	4	58	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10521447--10521493	21	2.1	23	84	7	62	31	2	6	59	1.34
10521447--10521493	22	2.1	23	84	7	62	31	2	6	59	1.34
10521590--10521620	16	1.9	16	93	0	53	70	9	3	16	1.26
10521591--10521635	19	2.3	19	84	7	63	73	6	2	17	1.15
10522547--10522571	3	8.3	3	100	0	50	64	0	0	36	0.94
10522882--10523291	119	3.4	118	75	5	351	48	13	18	20	1.81
10524472--10524521	22	2.4	22	80	6	59	4	12	4	80	1.00
10524493--10524558	18	3.6	18	66	2	51	6	12	4	77	1.10
10527326--10527364	14	2.9	14	84	3	53	23	0	0	76	0.78
10527329--10527370	10	4.6	9	82	11	50	23	0	0	76	0.79
10527774--10527851	40	2.0	40	97	0	147	47	8	8	34	1.66
10527846--10527913	11	5.8	11	74	17	50	45	7	1	45	1.40
10528295--10528340	21	2.1	22	84	4	58	58	0	0	41	0.98
10528345--10528418	33	2.3	33	77	11	82	48	0	0	51	1.00
10530343--10530376	10	3.5	10	88	8	52	32	0	0	67	0.91
10532833--10532877	2	22.5	2	86	0	63	44	0	6	48	1.29
10533430--10533454	12	2.1	12	100	0	50	64	0	0	36	0.94
10537237--10537270	16	2.1	16	89	10	52	61	2	0	35	1.11
10537467--10537523	28	2.0	28	87	12	82	63	1	0	35	1.05
10539531--10539562	16	2.0	16	100	0	64	12	31	18	37	1.88
10553052--10553763	47	14.9	46	79	6	581	38	21	11	28	1.89
10553005--10553763	93	7.9	93	77	7	634	37	21	11	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10557316--10557343	10	2.8	10	100	0	56	21	28	17	32	1.96
10558097--10558125	12	2.5	12	94	5	51	79	0	6	13	0.93
10564806--10564848	23	1.9	22	85	4	59	9	4	9	76	1.14
10564936--10564960	12	2.1	12	100	0	50	8	24	24	44	1.80
10565836--10565886	18	2.9	16	78	16	57	27	3	1	66	1.20
10566505--10566536	17	1.9	16	93	6	55	12	0	15	71	1.14
10568093--10568127	16	2.1	17	89	5	54	51	8	0	40	1.33
10568147--10568212	30	2.2	30	86	5	89	46	1	7	43	1.41
10569111--10569144	13	2.6	13	90	0	50	52	0	0	47	1.00
10569259--10569309	23	2.3	23	80	12	61	54	0	0	45	0.99
10569562--10569614	26	2.0	26	96	0	97	28	45	26	0	1.54
10571485--10571663	88	2.0	89	96	3	335	54	3	0	41	1.17
10571650--10571743	32	3.0	33	83	10	108	58	6	0	35	1.24
10572088--10572158	12	5.8	12	72	9	63	46	2	1	49	1.25
10572104--10572155	23	2.2	23	86	3	68	46	1	0	51	1.12
10573964--10574015	23	2.3	23	83	3	61	36	0	1	61	1.07
10574308--10574366	23	2.6	23	78	10	59	40	1	1	55	1.20
10573846--10574535	344	2.0	343	89	0	1067	35	13	9	41	1.78
10577210--10577244	16	2.2	16	90	10	54	68	0	0	31	0.90
10577254--10577310	22	2.7	20	71	17	53	50	1	7	40	1.40
10577444--10577486	10	4.0	10	80	16	50	37	4	0	58	1.19
10583113--10583183	16	4.7	15	70	20	58	30	0	1	67	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10583113--10583181	29	2.5	28	80	15	81	28	0	1	69	0.97
10583997--10584037	21	1.9	22	85	5	57	65	0	0	34	0.93
10584088--10584149	33	1.9	32	83	3	79	51	9	0	38	1.35
10584862--10584933	33	2.1	34	80	12	85	56	0	0	43	0.99
10584890--10584949	21	3.0	20	78	7	68	58	0	0	41	0.98
10584933--10584979	12	3.8	12	78	16	51	63	0	0	36	0.94
10584927--10584976	17	2.7	20	82	11	54	68	0	0	32	0.90
10585001--10585038	11	3.5	11	85	3	51	60	2	0	36	1.11
10591291--10591334	10	4.7	9	81	18	54	65	0	0	34	0.93
10591292--10591334	20	2.3	19	92	8	70	67	0	0	32	0.91
10592073--10592134	33	1.9	32	84	15	83	74	9	8	8	1.23
10593618--10593651	3	11.3	3	100	0	68	32	0	32	35	1.58
10599560--10599592	17	1.9	17	88	11	50	27	0	3	69	1.03
10599684--10599735	21	2.4	22	75	9	54	44	0	1	53	1.11
10602277--10602392	36	3.2	36	77	7	128	14	25	36	23	1.93
10602263--10602357	12	7.9	12	71	9	52	15	24	36	23	1.94
10602288--10602402	12	9.6	12	71	3	61	13	26	37	22	1.91
10602262--10602395	72	1.9	72	90	3	216	14	25	36	23	1.93
10603433--10603493	24	2.5	24	89	0	86	19	39	27	13	1.89
10603449--10603509	24	2.5	24	91	0	95	19	39	26	14	1.90
10603499--10603626	63	2.0	67	84	6	174	34	17	19	28	1.95
10605741--10605773	6	5.5	6	92	0	57	54	0	12	33	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10605741--10605775	18	1.9	18	100	0	70	54	0	11	34	1.37
10608580--10608606	11	2.5	11	100	0	54	44	7	0	48	1.31
10608622--10608647	11	2.4	11	100	0	52	34	0	7	57	1.27
10608652--10608703	12	4.6	12	79	11	65	34	0	17	48	1.48
10618737--10618769	16	2.0	17	88	5	50	39	0	3	57	1.14
10618860--10618914	16	3.7	16	76	18	64	54	0	0	45	0.99
10622703--10622779	37	2.1	38	95	2	138	42	14	20	22	1.88
10627481--10627513	8	4.2	8	88	3	50	57	0	39	3	1.14
10627620--10627932	166	1.9	167	90	4	499	41	3	5	49	1.44
10636046--10636083	2	19.5	2	89	5	60	44	0	2	52	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147