genome.fa.s445.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  70  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13298834--13298867	14	2.4	14	85	0	50	64	0	2	32	1.08
13300467--13300510	12	3.9	11	80	16	54	81	15	2	0	0.78
13300467--13300509	17	2.6	17	82	13	54	81	16	2	0	0.79
13305006--13305101	35	2.8	34	79	6	104	35	13	11	39	1.81
13305012--13305101	34	2.6	34	82	5	110	37	14	11	36	1.82
13305428--13305507	40	2.0	40	82	4	99	20	21	15	43	1.87
13305468--13306028	75	7.5	74	79	6	533	23	14	21	41	1.89
13305481--13306031	224	2.4	223	83	5	709	23	14	20	41	1.89
13305889--13306010	42	3.1	41	68	22	98	24	15	18	41	1.89
13306532--13306556	5	5.0	5	100	0	50	20	0	0	80	0.72
13306565--13306611	6	7.8	6	85	0	67	2	17	2	78	0.94
13309232--13309430	102	2.0	102	85	2	274	35	16	16	32	1.91
13309718--13309757	19	2.1	19	90	4	62	2	5	22	70	1.19
13309830--13309874	7	6.4	7	94	0	81	26	15	0	57	1.38
13309835--13309896	14	4.4	14	78	11	56	24	12	4	58	1.54
13309948--13309989	19	2.2	19	87	8	59	78	0	2	19	0.86
13310279--13310322	12	3.5	12	84	6	52	75	6	0	18	1.02
13310299--13310325	14	1.9	14	100	0	54	81	0	0	18	0.69
13323698--13323744	23	2.0	23	100	0	94	27	34	12	25	1.92
13327343--13327405	19	3.3	19	78	12	65	80	1	3	14	0.90
13327553--13327582	2	15.0	2	100	0	60	50	0	0	50	1.00
13333138--13333179	2	21.5	2	90	4	68	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13336464--13336552	46	1.9	46	93	0	151	29	21	23	25	1.99
13336651--13336795	72	2.0	72	87	0	209	22	21	23	33	1.98
13336883--13337189	163	1.9	164	88	2	474	43	5	12	38	1.65
13339218--13339508	145	2.0	146	95	1	521	49	14	17	18	1.80
13339590--13339621	12	2.7	12	95	0	55	40	37	0	21	1.54
13339625--13339671	3	15.7	3	90	0	76	4	34	27	34	1.77
13339617--13339674	6	9.7	6	94	0	62	10	34	22	32	1.88
13339622--13339674	12	4.4	12	92	0	79	7	33	24	33	1.84
13339658--13339725	3	22.7	3	73	11	50	35	30	2	30	1.73
13340491--13340543	21	2.4	22	93	6	90	52	0	0	47	1.00
13341717--13341784	14	4.7	14	75	13	66	45	4	0	50	1.22
13342332--13342380	21	2.3	21	82	0	62	38	4	14	42	1.64
13342573--13342607	13	2.7	13	90	0	52	42	0	20	37	1.52
13342610--13342667	17	3.4	16	77	13	53	51	3	1	43	1.28
13342683--13342755	30	2.4	30	86	2	92	41	5	15	38	1.70
13348947--13348976	8	3.9	8	91	8	53	86	0	0	13	0.57
13351830--13351986	52	3.0	52	84	7	194	26	25	8	40	1.83
13365394--13365423	3	10.0	3	100	0	60	0	33	0	66	0.92
13368267--13368323	20	2.6	22	76	17	66	33	5	10	50	1.59
13368283--13368417	64	2.0	67	92	5	231	37	6	8	47	1.61
13368369--13368449	8	10.0	8	78	15	69	38	6	9	45	1.62
13368369--13368448	24	3.3	24	80	15	85	38	6	10	45	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13368413--13368461	22	2.1	23	92	7	82	36	6	12	44	1.67
13368378--13368461	8	11.0	7	75	17	55	38	5	10	45	1.64
13368721--13368752	17	1.9	16	93	6	55	40	0	3	56	1.15
13368918--13369002	44	1.9	44	85	4	118	48	14	10	27	1.76
13369698--13369744	18	2.6	18	82	3	58	2	19	2	76	0.99
13380201--13380337	55	2.5	55	84	1	186	37	10	9	42	1.73
13380401--13380435	17	2.1	17	94	0	61	80	0	2	17	0.84
13380399--13380432	11	3.0	11	95	4	59	79	0	2	17	0.86
13380771--13380812	16	2.7	16	81	3	59	0	47	0	52	1.00
13381237--13381354	24	4.9	25	77	12	122	58	2	4	34	1.31
13381245--13381372	44	2.9	44	75	12	127	58	2	3	35	1.29
13381375--13381419	4	11.5	4	81	13	58	73	0	2	24	0.95
13381356--13381419	19	3.1	20	82	15	69	68	1	4	25	1.17
13381379--13381419	15	2.6	16	88	11	59	73	0	2	24	0.96
13381496--13382141	130	5.0	127	75	9	477	39	6	6	47	1.57
13381827--13381907	40	2.0	40	80	4	92	46	3	4	44	1.42
13381776--13382271	255	1.9	257	78	5	540	39	6	7	46	1.58
13385170--13385199	15	2.0	15	93	0	51	56	6	16	20	1.62
13389489--13389561	30	2.4	30	93	0	119	56	0	5	38	1.23
13389488--13389579	30	3.1	30	87	3	114	55	0	4	40	1.20
13389984--13390028	18	2.5	17	79	10	54	71	4	0	24	1.05
13392755--13392804	23	2.2	23	92	0	82	46	6	24	24	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13393362--13393432	28	2.4	28	83	6	88	30	18	23	26	1.97
13393527--13393631	52	2.0	52	86	0	147	42	8	20	27	1.81
13393593--13393626	18	1.9	17	88	5	50	47	2	20	29	1.65
13396659--13396699	22	1.9	21	85	5	55	39	2	17	41	1.62
13397603--13398660	210	5.0	210	87	5	1368	31	17	20	31	1.95
13399626--13399662	17	2.2	17	100	0	74	21	27	29	21	1.99
13404279--13404307	2	14.5	2	100	0	58	51	0	48	0	1.00
13406619--13407077	59	7.7	58	84	6	589	34	13	7	44	1.72
13406706--13406734	15	1.9	15	100	0	58	41	0	0	58	0.98
13406619--13407075	120	3.9	116	86	5	612	34	13	7	44	1.72
13407088--13407176	33	2.8	32	80	8	94	78	1	7	12	1.01
13407121--13407163	22	2.0	22	86	4	61	81	0	9	9	0.88
13407282--13407351	25	2.9	24	80	14	65	64	2	0	32	1.08
13407276--13407458	22	8.4	22	68	25	79	67	3	1	27	1.17
13407280--13407353	26	2.8	26	76	15	71	64	2	0	32	1.07
13407403--13407458	21	2.6	22	83	11	71	76	1	0	21	0.87
13407407--13407458	15	3.3	15	86	10	61	78	1	0	19	0.84
13407614--13407681	1	68.0	1	73	0	55	0	1	11	86	0.63
13407614--13407680	10	6.6	10	84	8	91	0	1	11	86	0.64
13407614--13407682	21	3.3	20	82	10	86	0	1	13	85	0.66
13407614--13407682	22	3.3	21	78	15	81	0	1	13	85	0.66
13407689--13407994	42	7.1	41	84	8	362	35	24	15	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13409393--13409493	19	5.3	18	74	15	71	5	15	0	78	0.94
13409389--13409493	29	3.6	29	75	13	83	5	16	0	78	0.94
13409417--13409466	9	5.2	9	81	13	64	2	12	0	86	0.67
13409410--13409468	11	5.7	10	80	13	66	1	15	0	83	0.74
13409402--13409493	20	4.7	20	78	8	100	5	16	0	78	0.93
13409459--13409493	17	2.2	16	90	10	54	8	14	0	77	0.99
13409446--13409497	27	2.0	27	88	3	79	7	17	0	75	1.03
13409402--13409480	11	7.4	11	78	17	60	5	16	0	78	0.92
13413413--13413441	15	1.9	15	100	0	58	41	0	0	58	0.98
13413385--13413849	59	7.7	60	83	9	565	33	12	7	45	1.71
13413864--13413948	5	17.6	5	71	18	56	77	2	4	15	1.03
13413863--13413949	31	3.0	29	77	15	90	75	2	6	14	1.10
13413979--13414005	13	2.1	13	100	0	54	85	0	0	14	0.61
13414835--13414933	23	4.6	21	74	15	69	68	4	5	22	1.26
13414830--13414901	19	3.7	19	75	17	60	69	1	5	23	1.17
13414828--13414942	41	2.9	38	78	18	94	69	3	4	22	1.21
13414828--13414961	18	7.0	18	70	21	62	68	2	3	24	1.20
13414927--13414963	11	3.2	12	77	14	51	64	0	0	35	0.94
13414930--13414979	19	2.6	21	84	15	72	64	2	0	34	1.05
13414925--13414990	25	2.8	25	79	18	70	65	3	0	31	1.08
13414927--13414974	22	2.2	22	85	7	62	62	2	0	35	1.07
13415403--13415444	20	2.0	22	86	9	61	66	11	4	16	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13415957--13416049	32	2.9	32	86	0	132	36	38	20	4	1.72
13416457--13416500	18	2.4	18	84	3	52	63	2	2	31	1.19
13416297--13416844	209	2.6	210	91	3	881	43	8	15	32	1.77
13416891--13416919	12	2.5	12	94	5	51	68	0	0	31	0.89
13416974--13417359	195	2.0	196	97	0	738	37	11	14	36	1.83
13417701--13417748	20	2.3	22	86	13	66	79	2	0	18	0.84
13418311--13418350	3	13.3	3	83	0	53	27	32	5	35	1.79
13419661--13419727	21	3.2	21	82	16	93	49	0	1	49	1.10
13419636--13419727	42	2.1	43	90	4	141	47	1	1	50	1.15
13419636--13419741	21	4.7	23	72	23	68	47	0	1	50	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147