genome.fa.s445.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  94  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17279692--17279725	14	2.3	15	90	10	61	52	5	0	41	1.25
17283860--17283908	22	2.2	22	81	3	53	63	16	8	12	1.51
17286810--17286838	14	2.1	14	93	6	51	44	0	3	51	1.18
17286878--17286915	17	2.2	18	90	4	60	42	0	0	57	0.98
17286878--17286923	17	2.7	17	75	0	56	50	0	0	50	1.00
17288654--17288693	22	1.9	22	85	10	57	35	15	5	45	1.68
17288832--17289003	59	2.9	58	86	1	245	31	16	3	48	1.63
17289162--17289210	21	2.5	19	83	12	55	69	2	2	26	1.10
17290629--17290671	19	2.3	19	84	8	52	58	2	2	37	1.24
17292247--17292378	52	2.6	51	76	13	139	31	12	15	40	1.83
17297067--17297129	31	2.0	32	87	9	94	22	6	14	57	1.60
17297486--17297516	2	15.5	2	100	0	62	48	0	0	51	1.00
17300182--17300223	2	21.0	2	90	0	66	45	0	2	52	1.13
17317978--17318012	18	1.9	18	88	0	52	14	51	5	28	1.65
17321317--17321459	72	2.0	72	85	1	196	37	9	5	47	1.60
17330613--17330644	16	1.9	17	93	6	57	28	0	0	71	0.86
17330687--17330729	22	2.0	20	82	8	50	53	0	2	44	1.13
17332381--17332471	47	1.9	47	88	0	137	28	17	4	49	1.66
17336503--17336887	57	6.7	55	80	12	418	37	11	6	44	1.67
17336500--17336887	56	6.8	56	83	8	451	37	11	6	44	1.67
17336500--17336886	113	3.4	114	87	4	539	37	11	6	44	1.67
17336905--17337008	5	19.8	5	74	13	77	76	1	4	16	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17336917--17336987	17	4.3	16	77	12	72	77	2	5	14	1.06
17336915--17336994	27	2.9	27	83	7	81	77	2	6	13	1.06
17336905--17336993	6	15.5	6	77	12	73	78	2	4	14	1.00
17336940--17336993	23	2.4	23	84	3	74	81	1	3	12	0.91
17336905--17336993	18	5.2	16	77	15	81	78	2	4	14	1.00
17337572--17337605	16	2.1	17	94	5	61	64	5	5	23	1.38
17338055--17338170	6	19.5	6	72	16	66	75	2	2	19	1.05
17338055--17338170	11	9.8	12	70	18	66	75	2	2	19	1.05
17338055--17338169	39	3.1	38	79	13	107	74	2	2	20	1.05
17338077--17338169	15	6.1	15	71	7	71	76	2	2	19	0.99
17338130--17338178	26	1.9	25	91	4	80	77	2	4	16	1.01
17338080--17338171	13	6.8	13	74	16	73	77	2	2	18	0.98
17338345--17338513	85	2.0	87	86	3	243	43	21	10	24	1.84
17338349--17338530	43	4.2	43	82	2	222	42	22	10	24	1.84
17338583--17338856	41	6.7	41	87	2	309	35	22	18	23	1.96
17338583--17338854	122	2.2	122	83	4	325	35	23	18	22	1.95
17339879--17339907	13	2.1	14	93	6	51	10	13	0	75	1.04
17339886--17339925	18	2.3	18	86	4	55	7	7	2	82	0.92
17339884--17339930	19	2.5	18	86	6	58	8	6	2	82	0.90
17339884--17339933	24	2.1	23	85	10	66	8	6	2	84	0.86
17350341--17350901	57	9.8	57	84	6	704	36	11	7	44	1.69
17350340--17350899	114	4.9	114	88	3	784	36	12	7	43	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17350918--17351032	5	22.8	5	70	19	71	75	0	6	16	1.06
17350912--17351006	44	2.2	43	84	7	120	75	1	6	16	1.06
17350923--17351020	38	2.5	38	80	14	103	76	1	7	15	1.05
17350918--17351017	17	5.9	16	72	17	69	77	1	6	16	1.02
17351905--17351932	11	2.5	11	100	0	56	75	7	0	17	1.03
17351940--17351999	22	3.0	21	80	11	72	65	6	5	23	1.37
17352083--17352195	12	8.9	12	72	15	61	72	3	3	20	1.14
17352105--17352195	26	3.7	24	78	10	76	74	3	3	18	1.09
17352130--17352195	6	10.8	6	76	12	55	75	4	1	18	1.04
17352129--17352196	12	5.5	12	78	15	68	76	4	1	17	1.03
17352116--17352199	13	6.5	13	71	16	68	75	3	1	20	1.03
17357016--17357105	11	7.9	11	70	13	58	74	1	7	16	1.11
17356997--17357041	16	2.5	19	86	13	60	77	2	4	15	1.02
17357016--17357049	12	3.0	12	91	8	54	79	0	5	14	0.91
17357021--17357110	32	2.9	31	73	12	78	73	1	10	15	1.15
17357900--17358009	3	36.3	3	85	5	105	65	7	1	25	1.28
17358428--17358785	123	2.9	123	82	2	416	45	14	21	18	1.85
17358799--17358948	69	2.2	69	86	1	210	42	15	24	18	1.88
17364431--17364474	12	3.5	12	84	6	52	75	6	0	18	1.02
17364438--17364527	13	7.3	12	71	16	53	72	5	3	18	1.19
17365325--17365364	20	2.0	21	90	5	64	72	0	2	25	0.97
17365324--17365395	23	3.1	23	76	13	67	66	2	2	27	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17365335--17365476	5	27.2	5	71	17	76	58	5	3	32	1.38
17365335--17365402	23	3.0	23	77	12	68	61	4	4	29	1.35
17367143--17367176	16	2.1	16	94	0	59	44	0	11	44	1.40
17369398--17369464	24	2.8	23	74	14	64	68	4	22	4	1.26
17373221--17373265	22	2.0	23	86	4	65	53	2	2	42	1.25
17373682--17373765	13	6.7	12	70	18	55	23	8	20	47	1.77
17373712--17373790	25	3.2	23	72	12	59	21	11	21	45	1.83
17373893--17373922	14	2.1	15	93	6	53	23	6	0	70	1.11
17375864--17375889	7	3.7	7	100	0	52	11	0	11	76	1.01
17375841--17375914	23	3.2	22	73	7	58	20	0	9	70	1.15
17376529--17376557	15	1.9	15	100	0	58	20	20	13	44	1.85
17376607--17376639	15	2.2	15	94	0	57	21	27	6	45	1.75
17379613--17379643	2	15.5	2	100	0	62	51	0	0	48	1.00
17383043--17383364	153	2.1	153	90	2	506	43	13	12	29	1.82
17387950--17387993	22	2.0	22	95	0	79	50	34	0	15	1.45
17387946--17387998	13	4.4	13	72	18	51	43	35	0	20	1.52
17388439--17388471	16	2.1	16	94	0	57	78	0	21	0	0.75
17389088--17389166	25	3.2	25	85	3	115	29	11	7	51	1.65
17389091--17389165	24	3.1	24	86	5	98	29	10	8	52	1.65
17390242--17390382	37	3.9	37	80	3	124	31	17	12	38	1.87
17390733--17390776	15	3.0	15	80	6	54	81	0	15	2	0.78
17391991--17392030	15	2.7	15	88	3	55	80	2	10	7	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17392067--17392110	18	2.3	19	84	7	54	75	2	22	0	0.92
17394275--17394351	33	2.3	34	81	2	93	27	11	22	38	1.88
17394836--17394878	12	3.6	12	83	0	59	88	4	4	2	0.70
17394837--17394878	17	2.4	17	84	4	57	88	4	4	2	0.71
17395023--17395200	63	2.8	61	80	11	171	27	2	5	64	1.28
17395570--17395632	31	2.0	31	81	6	74	30	23	20	25	1.99
17395580--17395653	31	2.4	32	86	11	109	28	24	22	24	2.00
17395957--17395983	5	5.4	5	100	0	54	18	44	37	0	1.50
17396172--17396559	57	6.7	57	87	10	549	45	7	13	33	1.72
17396172--17396559	109	3.4	110	88	8	523	45	7	13	33	1.72
17396316--17396407	30	3.2	30	62	22	70	44	9	7	38	1.66
17397065--17397223	47	3.4	47	81	2	185	28	11	13	45	1.79
17397068--17397284	95	2.3	95	82	7	246	29	13	12	44	1.81
17399531--17399624	27	3.5	27	83	2	100	45	29	4	20	1.70
17399589--17399679	20	4.4	20	68	20	53	43	34	1	20	1.59
17399614--17399654	6	6.7	6	85	2	55	48	31	2	17	1.60
17399561--17399654	13	7.2	13	69	14	52	47	31	2	18	1.60
17400913--17400943	13	2.4	13	94	0	53	70	3	0	25	1.02
17413539--17413570	16	1.9	17	93	6	57	18	21	6	53	1.67
17420788--17420828	18	2.3	18	86	0	55	24	19	14	41	1.89
17422696--17422745	13	4.0	12	78	19	50	70	0	4	26	1.05
17422938--17423013	37	2.1	37	92	0	125	36	13	30	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17423281--17423348	36	1.9	35	85	8	93	63	10	19	7	1.49
17423673--17423706	18	1.9	18	88	5	52	44	20	29	5	1.75
17424949--17425010	19	3.3	19	70	17	56	43	29	8	19	1.79
17430383--17430410	6	4.7	6	100	0	56	17	0	28	53	1.44
17430596--17430635	17	2.3	17	87	12	55	37	2	0	60	1.11
17430687--17430733	23	2.0	24	84	12	62	57	17	0	25	1.40
17433800--17433825	6	4.3	6	100	0	52	0	30	0	69	0.89
17434828--17434869	13	3.4	13	83	9	52	26	0	7	66	1.17
17435074--17435116	21	2.0	23	86	9	63	39	0	2	58	1.11
17439327--17439392	26	2.5	26	87	0	96	19	12	22	45	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147