genome.fa.s445.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  56  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10814367--10814395	3	9.7	3	100	0	58	68	0	0	31	0.89
10815683--10815758	40	2.0	40	87	7	113	39	2	2	55	1.28
10817303--10817358	6	9.7	6	88	7	89	17	67	14	0	1.22
10817303--10817358	11	4.8	12	89	8	89	17	67	14	0	1.22
10817303--10817358	17	3.2	17	89	2	85	17	67	14	0	1.22
10818604--10818757	79	1.9	79	90	0	245	38	9	13	38	1.77
10818827--10818867	17	2.4	18	88	8	59	34	0	2	63	1.08
10818893--10818926	10	3.3	10	95	4	59	47	0	0	52	1.00
10819488--10819545	21	2.7	21	73	7	55	29	13	15	41	1.86
10823006--10823069	27	2.4	26	82	10	67	62	6	3	28	1.34
10824782--10824819	19	2.0	20	89	5	60	65	0	31	2	1.06
10825255--10825292	19	2.0	20	89	5	60	65	0	31	2	1.06
10824571--10825519	473	2.0	472	99	0	1871	39	13	23	23	1.90
10825865--10825892	7	4.0	7	100	0	56	71	0	0	28	0.86
10827188--10827231	20	2.2	20	84	8	54	52	6	0	40	1.28
10832254--10832312	22	2.7	21	79	10	57	18	1	3	76	1.02
10835441--10835604	56	2.9	57	90	5	251	42	6	13	38	1.69
10838000--10838268	134	2.0	134	97	0	511	27	36	7	28	1.84
10839693--10839789	31	3.0	32	82	7	108	69	0	22	8	1.15
10839693--10839756	30	2.1	32	85	11	89	67	0	23	9	1.20
10841582--10841703	41	3.0	41	87	1	172	22	17	22	38	1.93
10841945--10842009	28	2.2	29	81	10	71	16	3	3	76	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10841947--10842006	21	2.9	20	77	5	66	16	3	3	76	1.05
10841955--10842009	7	8.0	7	72	11	51	16	1	3	78	0.98
10848138--10848175	2	19.0	2	100	0	76	50	0	0	50	1.00
10848561--10848587	2	13.5	2	100	0	54	48	0	0	51	1.00
10850375--10850404	14	2.1	15	93	6	53	10	6	0	83	0.81
10855623--10855663	14	2.9	14	92	0	64	34	7	0	58	1.26
10859677--10859744	23	2.9	23	80	12	84	32	1	1	64	1.11
10859703--10859772	30	2.3	31	76	11	74	27	0	2	70	1.02
10863452--10863484	15	2.2	15	94	0	57	24	18	21	36	1.95
10863506--10863541	2	18.0	2	88	0	54	44	0	5	50	1.25
10866903--10866980	33	2.3	32	81	12	86	51	11	10	26	1.70
10869380--10869434	25	2.2	25	87	9	85	16	10	9	63	1.51
10869428--10869480	22	2.4	21	77	20	54	39	7	1	50	1.41
10871786--10871847	3	20.7	3	100	0	124	32	0	0	67	0.91
10873362--10873419	26	2.2	27	79	14	68	50	1	1	46	1.22
10873505--10873567	22	2.8	23	74	13	60	60	1	0	38	1.07
10873929--10874233	140	2.2	138	79	6	328	27	10	14	47	1.76
10878893--10878934	18	2.4	18	88	4	59	38	0	2	59	1.10
10879581--10879624	21	2.1	21	91	0	70	29	11	15	43	1.82
10882045--10882100	25	2.2	26	84	9	71	14	12	0	73	1.11
10883583--10883632	24	2.1	24	92	0	82	54	2	12	32	1.49
10883581--10883629	13	3.9	13	78	10	57	55	2	10	32	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10890331--10890834	256	2.0	253	83	6	642	38	13	8	40	1.74
10892843--10892874	2	16.0	2	93	0	55	46	0	0	53	1.00
10894244--10894296	27	2.0	27	92	0	88	47	5	3	43	1.45
10895140--10895169	14	2.1	15	93	6	53	10	6	0	83	0.81
10898352--10898425	38	1.9	38	97	0	139	32	25	18	22	1.97
10899682--10899708	10	2.7	10	100	0	54	55	7	0	37	1.28
10903313--10903431	39	2.9	37	73	19	94	29	2	5	63	1.29
10903912--10903981	31	2.3	31	82	0	86	24	25	22	27	2.00
10904393--10904460	1	68.0	1	85	0	91	5	1	0	92	0.43
10904485--10904521	9	4.0	9	89	6	56	18	2	0	78	0.87
10904539--10905008	113	4.1	113	89	7	680	47	7	11	32	1.69
10905028--10905052	13	1.9	13	100	0	50	16	0	12	72	1.13
10908863--10908902	14	3.2	12	83	16	55	90	0	7	2	0.55
10908863--10908910	22	2.2	22	88	3	71	87	0	10	2	0.62
10908863--10908910	11	4.5	11	84	2	62	87	0	10	2	0.62
10910090--10910598	42	12.1	41	86	8	647	22	18	23	35	1.96
10910276--10910598	83	3.9	83	89	4	453	22	18	24	34	1.96
10910605--10910762	1	158.0	1	69	0	64	82	8	0	8	0.88
10910607--10910755	16	8.9	16	74	19	94	81	8	0	8	0.90
10910608--10910756	28	5.2	28	74	19	112	81	8	0	8	0.90
10910635--10910761	39	3.3	37	78	13	123	81	9	0	7	0.90
10910607--10910756	10	13.5	11	73	18	100	82	8	0	8	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10910675--10910756	9	9.7	9	74	23	72	80	9	1	8	0.96
10910608--10910762	17	9.3	17	73	19	100	81	8	0	9	0.90
10911543--10911601	31	1.9	31	85	0	82	22	25	23	28	1.99
10912172--10912576	58	6.8	58	87	8	548	45	8	12	33	1.72
10912303--10912391	27	3.2	27	62	20	65	41	6	14	37	1.72
10912607--10912631	13	1.9	13	100	0	50	16	0	12	72	1.13
10917314--10917340	10	2.7	10	100	0	54	55	7	0	37	1.28
10921523--10921560	14	2.7	15	84	8	53	55	0	0	44	0.99
10921767--10921791	2	12.5	2	100	0	50	48	0	0	52	1.00
10922227--10922261	17	2.1	17	88	0	52	77	5	0	17	0.96
10927243--10927316	6	12.5	6	72	18	57	1	18	1	78	0.90
10927243--10927318	10	7.1	10	71	12	53	1	19	1	77	0.91
10927235--10927282	25	1.9	26	87	8	73	0	22	0	77	0.78
10927268--10927332	34	1.9	34	84	6	87	3	21	3	72	1.12
10927265--10927352	40	2.2	40	82	8	99	5	18	2	73	1.13
10941896--10941949	14	3.7	15	85	9	76	18	0	27	53	1.45
10941888--10941974	28	2.9	30	79	10	97	18	1	27	52	1.52
10942196--10942237	3	14.3	3	85	5	59	30	0	2	66	1.04
10944114--10944178	22	3.0	22	73	13	71	30	16	23	29	1.96
10943984--10944305	154	2.1	154	82	1	385	37	17	20	24	1.94
10944246--10944290	22	2.0	22	87	8	65	42	20	13	24	1.87
10944774--10944861	42	2.1	42	89	4	133	48	23	12	14	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10945295--10945336	22	1.9	22	85	0	57	35	19	21	23	1.96
10945410--10945452	22	2.0	22	90	0	68	37	20	18	23	1.94
10945316--10945529	110	1.9	110	87	3	315	41	17	18	23	1.90
10945227--10945789	242	2.3	243	78	7	588	39	16	20	23	1.92
10945761--10945848	22	4.0	22	80	0	104	30	14	23	30	1.95
10945764--10945848	44	1.9	44	85	0	116	28	15	24	31	1.95
10945653--10946101	154	2.9	154	79	2	506	38	16	20	24	1.93
10946087--10946165	22	3.6	22	78	0	95	36	17	20	25	1.94
10945653--10946162	154	3.3	154	78	3	497	38	16	20	24	1.93
10946083--10946166	44	1.9	44	90	4	134	35	16	21	26	1.94
10946105--10946173	22	3.1	22	70	4	59	36	14	23	26	1.93
10946082--10946177	44	2.2	43	85	9	131	33	16	22	27	1.96
10946488--10946799	126	2.5	125	80	4	342	37	16	13	32	1.89
10947026--10947059	12	2.8	12	90	0	50	41	14	20	23	1.89
10947297--10947333	15	2.5	15	95	0	65	43	16	21	18	1.88
10948322--10948353	9	3.6	9	95	0	55	6	3	0	90	0.53
10948320--10948354	16	2.1	17	89	5	54	11	2	0	85	0.69
10948660--10948722	30	2.1	30	100	0	126	28	28	12	30	1.93
10948752--10948789	15	2.4	16	86	4	51	5	5	2	86	0.76
10955432--10955485	14	3.7	15	80	9	67	20	0	25	53	1.45
10955423--10955487	28	2.2	31	81	10	82	23	0	23	53	1.46
10955521--10955573	14	3.8	14	76	0	61	16	0	30	52	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10955705--10955745	16	2.5	17	88	4	57	36	0	2	60	1.10
10955950--10955989	21	1.9	21	85	10	55	57	5	0	37	1.21
10957162--10957203	21	1.9	23	85	9	61	28	4	2	64	1.26
10962867--10963135	120	2.2	121	80	2	274	30	14	6	49	1.68
10967045--10967097	3	17.7	3	92	0	88	30	1	1	66	1.13
10972507--10972565	26	2.3	25	73	21	59	57	1	1	38	1.19
10976428--10976469	22	1.9	22	90	0	66	33	11	9	45	1.73
10977607--10977794	93	2.0	93	96	0	349	40	21	11	26	1.87
10981474--10981552	31	2.5	31	81	6	97	18	15	25	40	1.90
10981531--10981560	10	2.9	10	95	5	51	3	16	30	50	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147