genome.fa.s445.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  91  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16735378--16735437	31	2.0	31	90	3	95	26	11	11	50	1.73
16735846--16735890	3	14.7	3	90	9	65	28	0	0	71	0.87
16735845--16735898	25	2.2	24	93	6	92	27	0	0	72	0.85
16735845--16735904	16	4.0	16	77	20	58	30	0	1	68	0.99
16735920--16735977	5	11.8	5	78	14	59	17	3	0	79	0.87
16735925--16735977	18	3.1	17	77	17	65	16	3	0	79	0.88
16735919--16735982	18	3.7	16	76	12	56	17	4	0	78	0.92
16735996--16736270	58	4.8	57	83	6	290	43	6	12	37	1.68
16736433--16736459	10	2.7	10	100	0	54	44	7	0	48	1.31
16738275--16738581	63	4.9	62	77	8	275	39	12	13	35	1.82
16738285--16738581	125	2.4	125	79	10	288	39	11	13	35	1.81
16744859--16744956	44	2.3	43	82	3	115	57	8	9	25	1.58
16748018--16748359	171	2.0	171	96	0	630	32	11	14	40	1.82
16750765--16751156	43	9.0	43	79	6	308	25	13	17	44	1.84
16750767--16750956	88	2.2	87	83	7	235	25	11	14	49	1.75
16750821--16751158	131	2.6	128	79	6	322	26	13	16	43	1.85
16752810--16752906	44	2.2	44	87	3	133	60	5	7	26	1.44
16754865--16754910	23	2.0	22	88	12	67	67	8	0	23	1.18
16759816--16759931	55	2.1	54	80	4	144	39	6	10	43	1.63
16762150--16762199	22	2.2	23	85	7	66	46	36	2	16	1.58
16762160--16762204	22	2.0	22	91	8	74	46	31	0	22	1.52
16762182--16762279	13	7.8	12	69	15	56	47	32	1	18	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16762207--16762290	36	2.3	37	89	2	125	51	29	1	17	1.53
16762207--16762306	36	2.8	36	84	6	96	50	31	2	17	1.57
16762422--16762478	11	4.6	12	77	20	55	43	40	1	14	1.55
16762422--16762481	7	9.4	7	75	17	60	43	40	1	15	1.56
16762422--16762481	25	2.4	25	86	5	77	43	40	1	15	1.56
16762432--16762481	18	2.7	19	90	6	77	46	40	0	14	1.44
16762519--16762566	19	2.4	21	79	6	55	37	31	4	27	1.76
16762574--16762622	18	2.6	19	83	3	64	38	36	4	20	1.72
16762574--16762630	18	3.1	18	76	2	60	40	38	3	17	1.67
16766508--16766552	18	2.8	17	84	15	60	35	0	0	64	0.94
16766519--16766552	14	2.4	14	90	9	52	35	0	0	64	0.94
16768015--16768094	32	2.5	32	87	4	108	12	8	6	72	1.27
16768015--16768095	31	2.5	32	84	6	101	12	8	6	72	1.26
16769118--16769197	27	3.0	26	76	10	81	43	10	20	26	1.82
16769792--16769948	32	4.9	32	75	7	147	27	15	21	35	1.94
16772553--16772598	24	1.9	24	100	0	92	34	4	19	41	1.71
16776129--16776160	16	1.9	16	93	6	55	18	0	0	81	0.70
16777336--16777384	19	2.6	19	80	0	53	16	2	32	48	1.57
16778432--16778465	3	11.3	3	93	0	59	38	0	0	61	0.96
16780127--16780410	132	2.2	132	84	2	365	33	11	14	40	1.83
16783392--16783430	17	2.4	17	82	4	53	35	15	5	43	1.69
16793168--16793202	17	2.1	18	89	10	56	11	22	2	62	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16796435--16796478	20	2.2	20	83	4	52	47	6	4	40	1.50
16799213--16799250	18	2.1	18	100	0	76	26	13	15	44	1.83
16801105--16801169	32	2.0	32	100	0	130	44	9	12	33	1.74
16801945--16801992	25	1.9	25	83	8	62	35	6	6	52	1.52
16806149--16806222	22	3.3	22	79	3	85	33	2	16	47	1.61
16808604--16808738	29	4.8	29	67	15	93	29	7	9	53	1.61
16808601--16808764	84	2.0	84	98	0	319	29	6	10	53	1.61
16809034--16809070	3	12.3	3	100	0	74	67	0	0	32	0.91
16809451--16809534	27	3.2	26	70	21	77	34	15	8	41	1.77
16810399--16810428	2	15.0	2	100	0	60	50	0	0	50	1.00
16810428--16810458	2	15.5	2	93	0	53	48	0	48	3	1.17
16817953--16817978	8	3.2	8	100	0	52	38	11	23	26	1.89
16821970--16822025	19	2.9	21	74	12	57	33	5	1	58	1.31
16821963--16822025	19	3.3	19	71	10	56	31	6	1	60	1.31
16822134--16822187	6	9.2	6	82	13	51	75	3	3	16	1.08
16824358--16824391	6	6.0	6	86	13	54	14	14	0	70	1.17
16827629--16827657	2	14.5	2	100	0	58	48	0	0	51	1.00
16829727--16829756	2	15.0	2	100	0	60	0	50	0	50	1.00
16833435--16833463	2	14.5	2	100	0	58	51	0	0	48	1.00
16835891--16835931	11	3.6	12	80	9	50	19	0	17	63	1.31
16836178--16836217	18	2.2	18	86	0	53	10	5	5	80	1.02
16836185--16836251	29	2.3	29	80	14	68	16	2	7	73	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16836185--16836257	18	4.1	18	72	20	55	16	4	8	71	1.26
16836194--16836264	35	2.0	35	83	5	90	18	4	8	69	1.31
16836357--16836382	6	4.3	6	100	0	52	84	0	0	15	0.62
16838101--16838129	2	14.5	2	100	0	58	51	0	0	48	1.00
16838267--16838324	17	3.1	18	78	14	64	36	0	1	62	1.06
16838271--16838326	18	3.0	18	72	15	51	35	0	1	62	1.06
16838321--16838364	18	2.4	18	81	7	54	70	0	0	29	0.88
16838601--16838648	16	3.1	16	80	17	64	39	0	8	52	1.32
16838802--16838957	59	2.6	60	78	8	165	44	5	9	40	1.59
16839144--16839195	27	2.0	26	85	11	70	34	5	3	55	1.42
16841443--16841516	30	2.5	30	86	4	105	43	5	13	37	1.67
16844244--16844282	20	2.0	20	90	10	62	30	20	10	38	1.86
16845125--16845156	13	2.6	13	90	9	50	0	15	0	84	0.63
16851268--16851296	15	1.9	15	100	0	58	20	27	3	48	1.66
16855900--16855935	17	2.1	17	100	0	72	47	5	5	41	1.50
16856607--16856635	15	2.0	15	93	6	51	0	6	3	89	0.57
16856830--16856891	20	3.2	20	86	4	83	1	12	9	75	1.11
16858673--16858735	18	3.7	15	80	15	54	6	14	0	79	0.92
16858682--16858729	18	2.7	17	84	9	60	8	14	0	77	0.99
16858673--16858735	17	3.7	17	81	10	67	6	14	0	79	0.92
16865721--16865772	4	12.8	4	79	4	50	71	3	5	19	1.22
16867154--16867198	21	2.1	21	91	0	72	40	13	15	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16867209--16867267	31	1.9	30	93	3	100	55	6	8	28	1.55
16867238--16867355	52	2.3	53	83	2	150	48	16	8	27	1.74
16867358--16867523	80	2.1	80	81	4	192	40	14	13	31	1.84
16867437--16867521	43	2.0	43	85	0	116	40	16	14	29	1.88
16876730--16876756	3	9.0	3	100	0	54	66	0	0	33	0.92
16876890--16876919	3	10.0	3	100	0	60	66	0	0	33	0.92
16877243--16877328	12	7.1	12	80	2	91	50	23	8	18	1.74
16877322--16877399	30	2.6	30	89	0	111	38	23	12	25	1.90
16877364--16877485	38	3.2	38	75	6	113	40	21	11	26	1.87
16879487--16879527	17	2.4	17	79	0	55	70	4	2	21	1.18
16880917--16881161	43	5.7	42	83	8	264	44	14	14	26	1.83
16891482--16891519	17	2.2	18	85	4	51	71	7	0	21	1.11
16895648--16895960	157	2.0	157	96	1	574	46	10	12	30	1.75
16896818--16896856	4	9.8	4	82	0	51	71	2	2	23	1.10
16897614--16897653	15	2.6	15	84	4	53	15	5	12	67	1.38
16904819--16904857	13	3.0	13	85	11	53	64	0	0	35	0.94
16904819--16904856	12	2.9	14	84	11	53	63	0	0	36	0.95
16904827--16904859	12	2.7	12	95	4	57	66	0	0	33	0.92
16905615--16905655	14	3.0	14	82	10	50	63	0	0	36	0.95
16905616--16905654	12	3.0	13	88	7	53	64	0	0	35	0.94
16907695--16907752	11	5.0	12	72	19	52	75	0	3	20	0.94
16907694--16907729	17	2.2	16	90	5	54	80	0	2	16	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16907683--16907736	24	2.4	22	81	9	63	77	0	7	14	0.97
16907697--16907754	20	2.8	21	89	5	82	74	0	5	20	1.01
16908173--16908211	15	2.7	15	88	4	53	71	2	0	25	0.98
16912543--16912584	21	2.0	21	85	0	57	30	0	4	64	1.14
16915084--16915129	16	2.9	16	83	0	65	82	0	13	4	0.81
16917033--16917198	67	2.5	66	80	4	174	24	16	10	48	1.77
16917033--16917249	66	3.3	67	79	3	199	23	17	10	48	1.77
16918196--16918233	14	2.7	14	92	8	60	13	0	7	78	0.94
16924009--16924168	10	16.2	10	69	15	93	49	8	2	40	1.46
16924034--16924176	38	3.7	39	81	9	141	51	6	2	38	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147