genome.fa.s445.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  8  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1550999--1551036	18	2.1	19	90	5	60	44	0	5	50	1.24
1555052--1555102	25	2.0	25	81	7	59	50	0	0	49	1.00
1556620--1556691	26	2.8	25	91	4	110	31	15	23	29	1.95
1558938--1558962	2	12.5	2	100	0	50	52	0	0	48	1.00
1558964--1558990	4	6.8	4	100	0	54	51	25	0	22	1.48
1561357--1561415	3	19.7	3	100	0	118	66	0	0	33	0.92
1569238--1569309	12	6.0	12	76	12	51	63	1	1	33	1.11
1569867--1569994	48	2.7	48	95	0	220	24	46	8	20	1.78
1570014--1570574	48	11.7	48	85	0	681	25	49	1	22	1.60
1570031--1570258	21	9.7	21	66	20	87	22	51	2	23	1.59
1570014--1570720	144	4.9	144	87	2	823	26	48	2	23	1.63
1570017--1570720	96	7.3	96	79	6	586	26	48	2	23	1.63
1570017--1570717	48	14.6	48	80	6	291	26	48	2	22	1.63
1571609--1571704	36	2.7	36	80	4	104	30	50	4	15	1.63
1571700--1571999	27	12.2	27	65	22	124	30	48	2	19	1.63
1571700--1571999	75	4.1	74	72	16	228	30	48	2	19	1.63
1571741--1571852	24	4.5	25	72	13	88	32	47	1	18	1.59
1571769--1572238	48	9.8	48	74	5	308	27	50	3	19	1.63
1571766--1572049	144	2.0	144	91	0	460	28	48	3	19	1.64
1571700--1571947	123	2.0	122	80	6	277	30	47	2	18	1.63
1571767--1572178	144	2.9	144	83	2	452	28	49	3	19	1.63
1571769--1572241	96	4.9	96	78	6	422	27	50	3	19	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1574166--1574207	13	3.5	12	84	9	50	33	4	2	59	1.31
1577309--1577336	8	3.5	8	100	0	56	25	10	25	39	1.87
1577962--1578097	52	2.6	51	84	2	200	50	8	17	24	1.73
1577963--1578117	52	3.0	52	83	4	199	50	7	15	27	1.70
1580342--1580390	9	5.2	9	81	13	55	24	2	2	71	1.07
1580550--1580814	97	2.7	98	77	8	265	44	9	8	37	1.68
1584246--1584279	12	2.8	12	86	0	50	20	2	29	47	1.65
1585605--1585688	32	2.6	33	79	7	91	28	0	7	64	1.20
1587159--1587222	29	2.3	28	83	5	76	26	6	9	57	1.54
1587195--1587233	19	2.0	20	85	5	53	30	7	7	53	1.57
1587518--1587543	2	13.0	2	100	0	52	50	0	0	50	1.00
1591737--1591765	6	5.0	6	91	8	51	0	13	0	86	0.58
1591737--1591765	11	2.5	12	94	5	51	0	13	0	86	0.58
1592408--1592473	30	2.2	30	86	0	87	54	6	3	36	1.41
1592679--1592759	29	2.7	30	77	14	78	48	3	6	41	1.46
1604353--1604657	33	9.2	33	78	1	261	29	34	17	18	1.94
1606606--1606649	14	3.2	13	84	9	52	47	0	0	52	1.00
1606641--1606692	25	2.1	25	82	7	61	50	5	1	42	1.37
1615744--1615796	14	3.7	15	78	19	60	45	0	0	54	0.99
1615720--1615796	27	2.9	27	76	18	74	45	0	0	54	0.99
1615731--1615806	27	2.8	26	79	13	75	47	0	0	52	1.00
1620144--1620521	184	2.1	184	97	0	720	26	11	21	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1621973--1621999	2	13.5	2	100	0	54	48	0	0	51	1.00
1628764--1628811	21	2.3	21	92	0	78	45	2	2	50	1.25
1628808--1628849	12	3.5	12	81	12	59	66	0	0	33	0.92
1628807--1628858	24	2.2	23	96	3	95	69	0	0	30	0.89
1628807--1628841	16	2.1	18	89	10	56	68	0	0	31	0.90
1629906--1629939	14	2.3	15	90	5	52	64	5	0	29	1.17
1630932--1630977	17	2.8	17	81	12	51	65	0	6	28	1.17
1631775--1631799	13	1.9	13	100	0	50	32	4	0	64	1.12
1637203--1637238	19	1.9	19	88	5	56	72	2	0	25	0.98
1639314--1639780	172	2.7	172	91	0	731	23	11	20	43	1.85
1644285--1644366	32	2.6	31	81	14	89	45	0	3	51	1.19
1644318--1644398	29	2.6	31	84	9	103	50	2	0	46	1.14
1660476--1660517	15	2.9	15	78	3	50	0	9	21	69	1.17
1675889--1675913	2	12.5	2	100	0	50	52	0	0	48	1.00
1676793--1676855	32	2.0	32	90	6	101	47	1	0	50	1.10
1686032--1686061	7	4.3	7	95	0	51	63	26	10	0	1.26
1686377--1686426	11	4.6	11	78	9	50	52	0	2	46	1.12
1686387--1686428	22	2.0	21	90	4	66	47	0	2	50	1.14
1686934--1686980	11	4.2	11	80	2	58	2	10	4	82	0.88
1689757--1689808	22	2.4	21	75	9	50	50	3	9	36	1.54
1689878--1689951	22	3.3	22	80	3	76	51	5	6	36	1.51
1689986--1690038	22	2.4	22	83	3	61	47	7	5	39	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1689933--1690018	41	2.0	43	84	8	115	44	6	8	40	1.61
1690288--1690339	3	17.3	3	100	0	104	67	0	0	32	0.91
1691977--1692021	21	2.1	21	84	8	56	33	2	2	62	1.20
1693962--1694014	24	2.2	24	89	0	79	49	13	9	28	1.73
1697672--1698099	145	3.0	140	79	8	398	41	10	13	34	1.79
1703789--1704098	142	2.2	145	82	3	376	44	10	10	34	1.73
1703843--1704120	143	1.9	143	82	4	346	44	10	9	34	1.72
1704897--1704939	9	4.9	9	80	5	52	83	2	0	13	0.74
1704903--1704937	16	2.2	16	94	0	61	85	0	0	14	0.59
1705877--1705984	52	2.1	52	84	3	137	39	8	23	28	1.83
1713354--1713383	15	2.0	15	100	0	60	46	20	0	33	1.51
1713423--1713481	22	2.7	22	71	10	57	52	3	6	37	1.45
1713551--1713624	22	3.3	22	82	3	85	51	4	6	37	1.47
1713556--1713619	11	5.8	11	73	0	56	53	3	7	35	1.46
1713646--1713699	22	2.5	22	84	6	65	50	12	3	33	1.59
1713966--1714021	3	18.7	3	92	0	94	66	30	1	1	1.12
1714911--1714935	2	12.5	2	100	0	50	52	0	0	48	1.00
1715637--1715695	30	2.0	30	89	0	91	35	10	5	49	1.59
1728340--1728405	25	2.6	26	81	13	75	80	7	6	6	1.03
1730749--1731144	145	2.8	142	80	6	406	34	12	11	41	1.79
1734836--1734891	23	2.4	24	84	6	87	32	10	8	48	1.69
1736836--1736891	23	2.6	21	80	11	60	64	5	0	30	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1738541--1738576	12	2.8	14	76	24	51	41	22	8	27	1.82
1738514--1738576	25	2.5	25	82	5	74	42	25	6	25	1.78
1739215--1740358	187	6.1	186	81	5	1176	40	10	13	35	1.79
1739215--1740325	374	3.0	370	83	4	1365	40	10	13	35	1.79
1745987--1746048	26	2.4	25	77	12	72	48	4	1	45	1.33
1746158--1746200	19	2.3	19	88	8	61	48	2	0	48	1.14
1746148--1746353	23	8.9	23	71	11	143	41	2	2	53	1.27
1746150--1746331	99	1.9	96	80	7	215	41	2	2	53	1.27
1746186--1746357	42	4.3	40	76	13	153	40	2	2	54	1.28
1746249--1746364	22	5.5	22	79	8	134	40	3	0	55	1.23
1746480--1746529	22	2.3	22	89	3	75	30	6	4	60	1.39
1753825--1754156	164	2.0	164	92	1	558	41	8	12	37	1.75
1759614--1759718	28	3.5	31	81	13	121	50	0	0	47	1.14
1759615--1759694	12	6.7	12	65	21	51	52	0	0	47	1.00
1760195--1760259	18	3.6	17	74	13	51	60	1	6	32	1.31
1762002--1762043	21	2.0	21	100	0	84	33	23	14	28	1.94
1766881--1766967	43	2.0	43	93	0	147	48	18	12	20	1.80
1771246--1772125	304	2.9	302	85	5	1139	33	12	15	39	1.84
1775525--1775768	80	3.1	79	83	1	256	43	24	7	24	1.79
1785141--1785198	21	2.8	21	68	2	55	41	15	29	13	1.86
1785712--1786088	134	2.8	134	84	1	452	37	18	14	29	1.91
1785808--1786012	67	3.1	67	63	12	150	36	19	14	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1788356--1788528	61	2.8	61	73	13	158	45	5	12	37	1.64
1788270--1788528	122	2.1	124	77	11	275	42	6	15	35	1.72
1789362--1789386	13	1.9	13	100	0	50	24	0	4	72	1.02
1795726--1795751	3	8.7	3	100	0	52	69	0	0	30	0.89
1795881--1797551	765	2.2	762	81	5	1893	43	10	13	32	1.79
1822674--1822744	35	2.0	36	83	5	90	46	8	4	40	1.54
1823167--1823222	25	2.3	23	79	11	58	66	1	0	32	1.03
1823632--1823683	21	2.5	19	80	17	59	55	7	1	34	1.39
1827519--1827550	2	16.0	2	93	0	55	53	0	0	46	1.00
1836376--1836421	25	1.9	23	86	8	65	39	0	2	58	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147