genome.fa.s445.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  131  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23632000--23632089	28	3.2	28	79	4	85	33	20	23	23	1.97
23632021--23632104	28	3.0	28	81	8	91	34	22	22	20	1.97
23632505--23632533	15	1.9	15	100	0	58	41	6	27	24	1.80
23632521--23632626	38	2.9	36	75	8	108	49	14	17	18	1.80
23632516--23632624	34	3.1	34	73	10	101	47	13	18	20	1.82
23632726--23632838	34	3.3	35	77	3	131	47	12	19	20	1.81
23632737--23632870	68	2.0	68	85	10	184	50	12	19	17	1.78
23632651--23633044	169	2.3	168	83	3	479	47	11	21	19	1.80
23632918--23633057	34	4.1	34	77	8	108	50	9	20	19	1.74
23632998--23633123	67	1.9	67	82	9	159	45	13	23	17	1.84
23633110--23633386	34	8.1	34	74	10	174	49	15	18	17	1.80
23633069--23633368	68	4.4	69	74	7	220	48	14	18	18	1.81
23633239--23633300	18	3.5	18	72	14	58	51	17	12	17	1.76
23645782--23645837	22	2.5	22	80	8	69	21	0	25	53	1.46
23645784--23645837	15	3.7	15	82	7	58	20	0	25	53	1.45
23645791--23645918	58	2.2	59	79	8	145	18	2	28	50	1.60
23645828--23646134	29	10.6	29	74	8	191	20	3	27	48	1.65
23645827--23646134	58	5.3	59	75	9	231	20	3	27	49	1.64
23645869--23646105	86	2.7	86	78	8	230	20	3	27	48	1.65
23646109--23646156	22	2.2	22	85	7	62	18	0	20	60	1.36
23646411--23646461	12	4.3	12	78	11	52	29	1	0	68	1.00
23646532--23646564	3	11.3	3	87	6	50	33	3	0	63	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23647850--23647912	28	2.3	28	76	13	67	33	14	23	28	1.94
23650335--23650407	37	2.0	37	81	10	87	35	1	1	61	1.13
23650348--23650422	37	2.1	36	82	12	91	36	2	1	60	1.20
23650527--23650571	3	15.0	3	100	0	90	33	0	0	66	0.92
23654161--23654220	2	30.0	2	82	0	75	48	1	3	46	1.28
23658184--23658246	29	2.3	29	84	12	82	50	0	3	46	1.17
23661082--23661133	19	2.7	20	82	5	63	50	1	0	48	1.12
23665783--23665937	75	2.1	75	98	0	301	43	6	17	32	1.74
23667800--23667846	23	2.0	24	84	12	62	29	4	17	48	1.65
23667293--23667991	349	2.0	348	96	0	1290	34	6	15	43	1.73
23676058--23676140	39	2.1	39	88	0	121	44	8	9	37	1.68
23676213--23676247	17	2.0	18	88	5	54	37	17	2	42	1.64
23680287--23680321	17	2.1	17	100	0	70	28	0	0	71	0.86
23682460--23682610	81	1.9	81	91	0	248	30	18	25	25	1.98
23687761--23687800	20	2.0	20	85	0	53	35	25	2	37	1.69
23696572--23696602	1	31.0	1	93	0	53	0	3	0	96	0.21
23702130--23702170	2	20.5	2	100	0	82	48	0	51	0	1.00
23704998--23705043	18	2.6	18	89	0	74	50	0	26	23	1.50
23706943--23706972	3	10.0	3	100	0	60	33	0	0	66	0.92
23708774--23708813	19	2.1	19	86	9	55	35	7	7	50	1.59
23719866--23719900	3	11.7	3	100	0	70	31	0	0	68	0.90
23720701--23720752	16	3.4	16	69	15	56	7	3	21	67	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23720704--23720761	29	2.0	29	82	3	71	13	3	18	63	1.43
23723614--23723670	21	2.7	21	91	0	87	35	15	8	40	1.79
23724217--23724272	10	5.9	9	77	14	51	71	12	1	14	1.23
23724228--23724272	19	2.4	19	85	10	58	73	11	2	13	1.19
23726065--23726097	13	2.6	13	85	4	50	24	24	21	30	1.99
23752064--23752099	18	2.0	18	100	0	72	38	22	0	38	1.54
23754572--23754617	22	2.1	22	83	0	56	76	2	10	10	1.12
23756486--23756620	54	2.5	54	77	4	139	34	12	22	31	1.91
23764744--23764790	18	2.5	19	82	6	60	31	0	0	68	0.90
23764770--23764804	15	2.4	15	90	4	54	28	0	2	68	1.04
23764827--23764879	24	2.4	22	84	12	72	54	0	0	45	0.99
23764828--23764893	29	2.4	29	81	18	81	54	0	0	45	0.99
23764883--23764912	15	1.9	16	93	6	53	43	3	0	53	1.17
23765229--23765303	32	2.4	31	84	8	98	40	2	4	53	1.34
23765314--23765360	20	2.3	21	82	14	62	23	0	4	72	1.02
23765406--23765445	20	2.1	19	90	9	64	67	0	0	32	0.91
23765557--23765592	18	1.9	18	88	5	54	69	2	0	27	1.02
23765558--23765788	117	2.0	117	96	2	432	44	10	8	35	1.70
23769524--23769573	2	25.5	2	83	4	66	48	4	2	46	1.32
23769514--23769562	15	3.2	15	85	8	55	48	8	2	40	1.44
23775038--23775072	16	2.2	16	90	10	54	8	8	0	82	0.83
23775033--23775078	23	2.0	22	87	4	65	10	6	0	82	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23778972--23779047	12	6.7	11	74	21	61	21	3	1	73	1.06
23778972--23779032	10	5.4	12	79	12	51	18	4	1	75	1.06
23778991--23779047	23	2.5	23	86	13	82	21	3	1	73	1.07
23778980--23779032	11	4.6	11	77	15	54	16	5	1	75	1.08
23780086--23780132	24	1.9	25	83	12	62	51	6	6	36	1.53
23780236--23780336	52	1.9	54	83	4	134	56	4	8	29	1.51
23782072--23782106	15	2.5	15	90	9	56	65	0	0	34	0.93
23783499--23783553	25	2.2	25	87	3	76	78	5	1	14	1.02
23784051--23784084	17	2.0	17	88	0	50	35	17	23	23	1.95
23784429--23784479	18	2.8	18	78	0	66	50	0	0	49	1.00
23785648--23785746	37	2.7	37	83	0	126	41	20	10	28	1.84
23785691--23785826	42	3.3	40	82	9	161	41	18	10	29	1.83
23785861--23785931	22	3.2	22	66	15	56	36	12	12	38	1.82
23786383--23786424	18	2.3	19	80	12	52	40	14	16	28	1.88
23786980--23787138	70	2.3	70	81	4	178	44	15	10	30	1.79
23787992--23788027	16	2.2	17	90	5	56	0	16	0	83	0.65
23788228--23788263	18	1.9	19	88	5	56	22	25	5	47	1.73
23788278--23788333	20	3.1	18	75	22	55	3	19	1	75	1.05
23792040--23792084	14	3.2	14	87	0	54	2	0	20	77	0.87
23792043--23792083	20	2.0	20	85	0	55	2	0	17	80	0.82
23792389--23792440	19	2.7	20	79	5	63	3	5	11	78	1.05
23792627--23792660	16	2.1	17	88	5	52	17	0	5	76	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23797688--23797751	28	2.2	28	84	13	78	43	4	6	45	1.50
23802772--23802858	39	2.2	39	87	0	120	22	28	12	35	1.91
23806877--23806918	20	2.1	20	100	0	84	38	33	4	23	1.76
23810990--23811084	27	3.5	27	78	5	102	35	40	4	20	1.72
23812681--23812743	25	2.5	25	89	5	92	19	26	17	36	1.94
23818116--23818159	22	2.0	22	90	0	70	31	9	13	45	1.75
23818603--23818675	36	2.0	36	97	0	137	46	8	26	19	1.77
23823498--23823549	23	2.3	22	80	3	59	25	19	11	44	1.84
23829243--23829286	19	2.2	20	92	4	72	29	0	0	70	0.88
23829908--23829955	18	2.7	18	77	6	53	58	2	2	37	1.22
23835635--23835683	24	2.0	26	84	15	68	44	2	2	51	1.24
23835677--23835734	18	3.0	20	73	19	59	62	0	0	37	0.96
23836745--23836778	11	2.9	12	82	8	52	76	0	11	11	1.02
23837225--23837273	16	3.5	14	81	13	57	83	0	12	4	0.77
23839157--23839198	16	2.6	17	81	11	52	45	0	0	54	0.99
23845907--23845950	22	1.9	24	86	9	65	47	0	0	52	1.00
23850831--23850902	11	6.5	11	71	20	53	45	0	0	54	0.99
23851009--23851059	18	2.8	18	77	13	59	47	1	0	50	1.12
23851817--23851863	18	2.5	19	80	13	53	36	0	2	61	1.08
23852050--23852106	6	9.3	6	83	7	53	45	1	0	52	1.11
23854243--23854289	15	2.9	17	84	12	64	38	0	0	61	0.96
23855131--23855195	2	33.0	2	82	3	69	44	0	3	52	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23859375--23859418	21	2.1	21	95	4	81	43	0	0	56	0.99
23859375--23859418	10	4.3	11	83	11	58	43	0	0	56	0.99
23859403--23859449	16	2.9	16	81	9	51	34	0	0	65	0.93
23860807--23860839	17	2.0	16	94	5	57	12	0	3	84	0.72
23861515--23861557	21	2.0	22	86	4	61	25	0	4	69	1.07
23864526--23864586	23	2.7	23	82	10	81	44	3	4	47	1.41
23864529--23864586	22	2.6	22	83	2	71	46	1	5	46	1.35
23864563--23864858	133	2.2	130	80	13	320	34	8	4	52	1.53
23864563--23864943	131	2.9	130	75	13	357	33	9	4	52	1.55
23866375--23866413	20	2.0	20	89	0	60	10	15	0	74	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147