genome.fa.s445.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  42  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8492958--8493001	23	2.0	22	83	16	56	22	6	2	68	1.25
8494681--8494784	11	9.8	10	74	19	70	2	6	7	82	0.92
8494701--8494733	5	6.8	5	93	6	50	3	12	0	84	0.72
8494684--8494763	24	3.5	22	79	16	90	3	5	7	83	0.89
8495447--8495508	27	2.3	26	81	8	70	32	9	6	51	1.60
8496557--8496594	20	1.9	20	94	0	67	13	7	2	76	1.11
8497429--8497468	18	2.1	18	86	9	53	17	10	10	62	1.53
8497496--8497542	19	2.4	19	80	16	60	25	2	0	72	0.96
8498238--8498267	2	15.0	2	92	0	51	53	0	0	46	1.00
8499502--8499568	34	2.0	34	100	0	134	29	17	7	44	1.76
8507602--8507634	16	2.1	16	94	5	59	39	21	15	24	1.91
8508163--8508379	61	3.6	59	84	3	272	33	12	5	48	1.64
8508163--8508379	120	1.8	120	85	1	308	33	12	5	48	1.64
8508162--8508379	59	3.6	59	82	5	267	33	12	5	48	1.64
8508266--8508512	133	1.9	132	84	8	331	36	11	3	48	1.57
8509487--8509563	12	6.3	12	77	10	61	70	1	3	24	1.12
8509505--8509548	18	2.4	18	88	7	63	63	2	4	29	1.26
8509495--8509553	23	2.7	21	80	12	64	67	1	3	27	1.16
8509767--8510011	44	5.6	43	80	5	222	45	17	13	22	1.84
8509825--8510011	87	2.1	87	84	3	234	47	18	12	21	1.82
8509749--8509990	131	1.8	132	82	3	308	43	18	14	23	1.87
8509955--8510147	42	4.5	42	88	3	253	42	21	11	24	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8510575--8510806	83	2.8	83	90	2	358	34	16	12	36	1.87
8511936--8512016	35	2.3	36	82	6	103	9	14	3	71	1.26
8511964--8512047	9	9.8	9	74	18	56	7	14	1	77	1.04
8511955--8512011	25	2.2	25	84	3	78	5	17	0	77	0.95
8511971--8512032	25	2.7	22	78	11	61	4	11	1	82	0.89
8511954--8512047	35	2.8	34	91	6	147	6	15	1	76	1.04
8516949--8516991	14	2.9	15	76	16	54	44	6	25	23	1.78
8516978--8517010	17	1.9	17	88	11	50	45	3	21	30	1.67
8518060--8518297	58	4.0	60	81	8	288	34	10	5	50	1.58
8518060--8518273	61	3.6	58	84	8	259	35	10	5	48	1.59
8518168--8518424	133	2.0	130	82	7	315	35	10	5	49	1.60
8518303--8518538	59	4.1	56	76	12	228	34	11	5	48	1.62
8518318--8518529	116	1.8	116	81	9	261	35	13	5	46	1.65
8518561--8518602	6	7.5	6	89	5	54	64	0	0	35	0.94
8518566--8518599	5	6.6	5	90	6	50	67	0	0	32	0.91
8519486--8519583	3	31.7	3	74	17	67	68	2	3	26	1.15
8519787--8519841	15	3.7	15	86	9	60	40	12	9	38	1.75
8521400--8521437	14	2.5	15	83	8	51	71	5	2	21	1.19
8522159--8522207	24	2.0	24	88	0	71	28	12	10	48	1.73
8522404--8522478	31	2.6	27	78	17	71	58	0	5	36	1.21
8523409--8523454	15	3.1	15	93	0	83	39	19	2	39	1.64
8525069--8525136	25	2.7	26	77	13	70	60	2	4	32	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8528255--8528306	3	17.3	3	100	0	104	67	0	0	32	0.91
8530191--8530218	2	14.0	2	100	0	56	50	0	0	50	1.00
8530703--8530734	16	2.0	17	88	11	50	18	12	12	56	1.67
8530783--8530817	10	3.7	10	85	14	56	60	0	0	40	0.97
8531111--8531143	17	1.9	17	93	0	57	48	0	0	51	1.00
8531268--8531304	17	2.2	17	95	0	65	45	5	2	45	1.40
8531783--8531823	2	21.5	2	85	9	59	48	0	0	51	1.00
8530783--8534800	511	7.8	509	86	5	5300	45	5	6	42	1.52
8532122--8532188	27	2.5	27	90	0	107	52	7	0	40	1.30
8532299--8532341	19	2.3	19	88	8	61	48	0	2	48	1.14
8532814--8532863	2	27.0	2	82	15	63	50	0	2	48	1.12
8533157--8533223	27	2.5	27	90	0	107	52	7	0	40	1.30
8533334--8533382	2	26.5	2	80	15	61	48	0	2	48	1.12
8533334--8533378	19	2.3	19	88	7	63	48	0	2	48	1.13
8533334--8533382	9	5.3	10	79	16	61	48	0	2	48	1.12
8533854--8533907	2	29.0	2	83	14	71	50	0	1	48	1.11
8531783--8534328	525	4.9	530	85	7	3246	45	5	6	42	1.52
8534203--8534269	27	2.5	27	87	0	98	50	8	1	38	1.43
8534697--8534732	17	2.1	17	94	0	63	47	0	0	52	1.00
8537991--8538017	3	9.0	3	100	0	54	66	0	0	33	0.92
8541464--8541497	16	2.1	16	100	0	68	38	17	26	17	1.92
8541645--8541970	164	2.0	164	97	0	616	27	22	15	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8544514--8544557	22	2.0	22	86	0	61	43	9	11	36	1.72
8548605--8548784	95	1.9	97	88	6	278	39	14	21	24	1.91
8552539--8552595	24	2.4	24	82	11	64	59	7	1	31	1.34
8556195--8556229	15	2.3	15	90	9	54	77	0	0	22	0.78
8556192--8556226	18	1.9	18	88	0	52	80	0	0	20	0.72
8556342--8556482	44	3.2	43	74	6	138	38	14	14	32	1.87
8556342--8556518	89	2.0	88	81	8	207	39	14	14	31	1.87
8556531--8557345	49	16.8	49	78	8	672	43	17	10	28	1.82
8556513--8557345	99	8.6	96	76	9	673	42	17	10	29	1.82
8558176--8558232	7	7.9	7	77	13	53	10	5	1	82	0.90
8560033--8560102	22	3.2	21	74	8	59	47	7	8	37	1.62
8560076--8560122	22	2.1	22	84	7	60	53	4	8	34	1.51
8560172--8560213	22	1.9	22	85	0	57	59	2	4	33	1.31
8560285--8560366	22	3.8	21	79	9	85	56	3	6	34	1.42
8560304--8560358	11	5.0	11	77	0	56	54	3	3	38	1.36
8560652--8560805	66	2.3	66	80	9	172	44	9	7	39	1.64
8560653--8560790	22	6.3	22	73	5	100	44	10	5	39	1.62
8560696--8560791	44	2.2	45	79	5	115	43	9	7	39	1.65
8561088--8561141	23	2.4	22	84	3	63	50	11	3	35	1.56
8561067--8561145	22	3.5	22	75	3	77	51	8	5	34	1.55
8561299--8561446	22	6.8	22	81	9	97	45	6	6	41	1.55
8561320--8561424	43	2.4	44	78	9	108	46	6	6	40	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8567845--8567869	10	2.5	10	100	0	50	44	20	0	36	1.52
8574087--8574115	7	4.3	7	91	8	51	44	41	13	0	1.44
8574256--8574294	2	19.5	2	100	0	78	0	51	0	48	1.00
8579061--8579098	19	2.0	19	94	0	67	50	2	5	42	1.39
8579145--8579210	2	33.0	2	100	0	132	50	50	0	0	1.00
8587233--8587502	42	6.5	42	90	3	411	24	18	22	35	1.96
8587507--8587554	7	6.9	7	83	9	62	87	4	0	8	0.66
8587509--8587554	13	3.5	12	83	16	56	86	4	0	8	0.68
8590730--8591233	116	4.3	116	86	4	635	44	7	13	35	1.71
8591087--8591176	27	3.2	26	66	22	65	45	4	12	37	1.62
8591098--8591189	31	3.1	31	67	17	86	45	7	11	34	1.70
8590732--8591233	58	8.7	57	79	7	514	43	7	13	35	1.71
8594575--8594618	18	2.4	18	88	0	61	79	0	11	9	0.93
8595896--8595981	43	2.0	41	86	8	120	39	9	15	36	1.79
8596299--8596607	41	7.5	41	88	3	458	22	18	23	35	1.96
8596299--8596607	83	3.7	83	90	4	480	22	18	23	35	1.96
8596299--8596607	124	2.5	124	91	1	485	22	18	23	35	1.96
8596614--8596650	12	2.9	13	92	8	67	86	13	0	0	0.57
8596574--8596853	107	2.5	111	85	7	342	43	13	14	28	1.83
8597006--8597081	6	11.8	6	78	20	57	15	3	1	78	0.96
8597006--8597076	21	3.6	20	79	9	76	16	2	1	78	0.94
8597006--8597076	20	3.6	21	79	9	78	16	2	1	78	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8597270--8597331	31	2.0	31	93	6	108	46	6	37	9	1.62
8598210--8598279	32	2.2	32	94	2	122	50	10	25	14	1.74
8599815--8600258	59	7.7	57	76	9	404	43	6	12	36	1.70
8601892--8601934	23	2.0	23	86	9	63	41	6	2	48	1.43
8602053--8602087	12	2.8	12	91	4	52	51	2	5	40	1.40
8605883--8605918	17	2.1	18	89	5	56	47	13	11	27	1.77
8608487--8608638	81	1.9	82	84	5	211	25	16	11	47	1.79
8613751--8613783	2	16.5	2	100	0	66	51	0	0	48	1.00
8614735--8614775	5	8.2	5	83	0	55	73	0	26	0	0.84
8614733--8614773	10	4.1	10	93	6	66	70	0	29	0	0.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147