genome.fa.s445.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  45  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9036310--9037176	338	2.6	339	95	0	1556	33	18	16	31	1.93
9045138--9045173	2	18.0	2	94	0	63	47	0	0	52	1.00
9048893--9048963	24	3.0	24	71	22	67	61	1	0	36	1.05
9050457--9050759	162	2.0	154	84	10	408	25	8	17	48	1.76
9051117--9051233	16	7.4	16	71	11	62	56	15	0	27	1.45
9055960--9056066	50	2.1	51	96	1	198	40	8	14	37	1.76
9057481--9057526	23	2.0	23	95	0	83	17	19	34	28	1.94
9058089--9058164	40	1.9	40	83	2	100	47	5	7	39	1.55
9059224--9059287	32	2.0	31	87	3	92	42	9	9	39	1.70
9059295--9059354	12	4.8	13	76	15	56	65	0	0	35	0.93
9059298--9059336	16	2.4	16	82	0	51	64	0	0	35	0.94
9059294--9059355	22	2.8	22	73	7	63	64	0	0	35	0.94
9062042--9062071	14	2.1	14	93	0	51	33	26	20	20	1.97
9066799--9066851	20	2.7	20	85	11	81	45	3	1	49	1.31
9067118--9067159	22	1.9	22	85	0	57	33	0	0	66	0.92
9069972--9069996	13	1.9	13	100	0	50	0	0	12	88	0.53
9070656--9070695	21	1.9	21	89	0	62	50	2	7	40	1.44
9071639--9071708	6	11.8	6	76	7	54	67	7	1	24	1.24
9071636--9071708	12	6.2	12	76	9	71	68	6	1	23	1.21
9076301--9076343	21	2.3	19	81	18	54	65	0	0	34	0.93
9076234--9076337	53	2.0	51	81	10	122	52	0	0	46	1.07
9078771--9078816	20	2.3	20	96	0	83	36	4	19	39	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9084196--9084249	22	2.5	22	80	14	60	29	0	3	66	1.09
9084283--9084315	14	2.3	15	89	5	50	33	0	0	66	0.92
9088776--9088850	18	4.2	18	71	0	69	37	30	5	26	1.79
9093437--9093517	22	3.9	20	77	9	83	34	0	0	65	0.93
9093428--9093521	42	2.3	42	87	5	129	39	1	0	59	1.04
9093822--9093852	3	10.3	3	100	0	62	67	0	0	32	0.91
9093964--9093997	10	3.1	11	87	12	52	29	0	0	70	0.87
9094704--9094749	18	2.5	18	82	10	58	30	0	0	69	0.89
9095004--9095036	12	2.8	12	95	4	59	63	0	0	36	0.95
9096082--9096130	4	12.0	4	79	12	55	46	2	2	48	1.25
9096082--9096137	21	2.7	21	83	2	60	46	3	3	46	1.37
9096083--9096137	25	2.2	25	80	6	67	45	3	3	47	1.38
9098892--9098927	11	3.2	11	92	4	54	38	11	19	30	1.86
9100298--9100332	18	1.9	18	88	0	52	57	2	25	14	1.51
9100707--9100767	16	3.6	16	79	16	77	55	0	0	44	0.99
9100706--9100761	20	2.8	20	86	2	76	57	0	0	42	0.99
9104958--9105025	6	11.7	6	79	1	68	63	11	1	23	1.36
9104969--9105025	24	2.4	24	87	0	87	59	14	1	24	1.44
9109091--9109131	22	1.9	21	85	5	55	31	0	4	63	1.15
9109290--9109318	2	15.0	2	92	7	51	51	0	0	48	1.00
9109292--9109317	13	2.0	13	100	0	52	53	0	0	46	1.00
9109290--9109325	17	2.1	17	94	0	63	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9109288--9109318	15	2.1	15	100	0	62	51	0	0	48	1.00
9116931--9116985	26	2.0	27	86	6	76	47	0	5	47	1.25
9118406--9118450	23	2.0	23	95	0	81	51	2	6	40	1.41
9120109--9120143	10	3.5	10	100	0	70	40	0	0	60	0.97
9120858--9120901	19	2.3	20	81	18	58	52	0	2	45	1.13
9125476--9125504	2	14.5	2	100	0	58	48	0	0	51	1.00
9127877--9127905	12	2.3	13	94	5	51	51	0	3	44	1.18
9129857--9129884	2	14.0	2	100	0	56	50	0	0	50	1.00
9138921--9138959	2	19.5	2	100	0	78	51	0	0	48	1.00
9140223--9140284	28	2.2	28	85	2	81	51	11	3	33	1.54
9141574--9141625	20	2.6	20	100	0	104	53	0	0	46	1.00
9141970--9142014	20	2.4	19	82	10	56	64	2	4	28	1.25
9141976--9142014	20	2.0	19	90	5	60	64	2	5	28	1.28
9145713--9145922	105	2.0	105	97	0	393	25	11	28	34	1.91
9145973--9146018	20	2.3	20	100	0	92	15	21	17	45	1.85
9157937--9157980	22	2.0	22	90	0	70	43	11	11	34	1.77
9157940--9157992	22	2.4	22	81	6	54	49	7	11	32	1.67
9158746--9158836	6	15.2	6	75	11	53	25	2	1	71	1.04
9158736--9158836	25	4.1	23	75	13	69	23	2	0	72	1.05
9158774--9158907	3	42.7	3	72	20	73	30	4	0	64	1.19
9158805--9158859	23	2.4	22	81	6	65	29	3	1	65	1.20
9159918--9159974	11	5.5	10	83	8	53	12	5	1	80	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9159918--9159968	17	3.2	17	72	10	54	11	5	1	80	0.97
9160027--9160296	58	4.7	57	83	8	307	43	6	12	37	1.69
9163778--9163841	26	2.5	26	87	5	85	48	14	20	17	1.81
9163778--9163850	26	2.8	26	83	8	78	49	13	19	17	1.80
9170150--9170181	3	10.7	3	100	0	64	68	0	0	31	0.90
9171490--9171515	10	2.6	10	100	0	52	57	0	0	42	0.98
9174271--9174296	2	13.0	2	100	0	52	50	0	0	50	1.00
9174427--9174483	25	2.3	24	80	16	64	47	0	0	52	1.00
9176851--9176894	20	2.3	19	80	4	52	0	25	4	70	1.06
9182975--9183014	2	20.5	2	89	5	64	45	0	2	52	1.14
9185393--9185578	92	2.0	92	94	0	327	30	13	12	43	1.81
9186434--9186469	12	3.0	12	100	0	72	66	0	0	33	0.92
9191492--9191648	52	3.0	52	85	3	192	41	8	23	26	1.83
9192939--9192973	16	2.2	16	94	0	61	34	0	14	51	1.42
9192931--9192973	6	7.5	6	84	10	54	34	0	11	53	1.37
9206116--9206161	23	2.0	23	100	0	92	30	26	13	30	1.93
9208045--9208076	2	16.0	2	93	0	55	50	3	46	0	1.17
9208240--9208322	28	3.0	27	79	11	87	60	1	3	34	1.22
9208947--9209009	26	2.5	25	74	18	67	57	0	7	34	1.28
9209076--9209131	20	2.6	21	78	13	60	53	1	1	42	1.21
9209972--9210025	22	2.7	20	77	13	58	53	0	0	46	1.00
9209992--9210136	69	2.1	69	81	7	161	49	0	1	48	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9210002--9210136	60	2.1	68	82	12	169	49	0	1	48	1.15
9210057--9210109	18	2.8	18	74	5	52	56	1	0	41	1.10
9210601--9210675	28	2.5	31	81	10	86	34	4	4	57	1.36
9211170--9211205	18	2.0	18	88	0	54	25	16	0	58	1.38
9213058--9213087	12	2.4	12	94	5	51	46	0	0	53	1.00
9213441--9213505	31	2.1	31	94	2	114	44	1	3	50	1.26
9213789--9213834	15	2.8	16	83	9	58	39	0	0	60	0.97
9215887--9215929	9	4.7	9	86	13	61	34	0	0	65	0.93
9215887--9215929	17	2.3	18	88	11	61	34	0	0	65	0.93
9215947--9216001	22	2.4	23	82	11	69	56	1	0	41	1.10
9225109--9225157	25	2.0	25	96	4	91	55	8	0	36	1.30
9226716--9226818	48	2.1	48	82	3	118	43	14	4	36	1.67
9229115--9229140	4	6.5	4	100	0	52	26	23	26	23	2.00
9233628--9233666	14	2.7	15	88	4	53	53	0	2	43	1.14
9233649--9233699	25	2.0	25	84	0	66	49	0	0	50	1.00
9234499--9234534	11	3.3	11	84	0	54	36	33	11	19	1.87
9241884--9241943	13	4.9	12	71	8	50	65	1	0	33	1.03
9241984--9242030	25	2.0	23	87	8	67	51	0	2	46	1.13
9241971--9242059	31	2.8	31	78	8	92	49	0	1	49	1.08
9246213--9246309	48	2.0	48	93	0	167	28	16	2	52	1.55
9246546--9246615	29	2.4	29	83	6	81	48	1	4	45	1.30
9253816--9253873	30	1.9	30	83	13	75	50	0	1	48	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9253821--9253884	28	2.3	28	80	17	71	46	0	1	51	1.10
9253827--9253883	22	2.3	27	82	17	70	49	0	1	49	1.11
9253865--9253898	16	2.1	17	88	5	52	52	0	0	47	1.00
9254947--9254974	14	2.0	14	100	0	56	28	21	7	42	1.79
9261618--9261663	14	3.2	14	84	6	65	47	0	2	50	1.13
9263110--9263143	15	2.3	15	89	0	50	38	5	2	52	1.41
9268743--9268801	11	5.3	11	78	11	66	30	1	0	67	1.00
9268735--9268801	23	2.9	23	80	10	75	32	1	0	65	1.02
9268748--9268789	14	2.9	15	86	6	52	26	2	0	71	0.98
9268742--9268810	23	3.0	22	74	14	59	34	1	0	63	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147