genome.fa.s445.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  129  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23225545--23225626	34	2.4	34	85	4	103	39	12	15	32	1.85
23225685--23225709	13	1.9	13	100	0	50	4	16	16	64	1.44
23226039--23226087	21	2.3	22	80	16	59	71	2	10	16	1.22
23226177--23226224	24	2.0	24	100	0	96	29	16	20	33	1.95
23228050--23228452	148	2.8	147	80	6	419	21	17	9	50	1.75
23228508--23228561	19	3.1	18	82	15	60	0	12	7	79	0.92
23228508--23228560	17	3.1	17	86	13	65	0	13	7	79	0.93
23234065--23234159	38	2.6	37	78	5	95	33	7	23	35	1.83
23234065--23234209	35	4.1	35	75	8	105	32	10	20	36	1.87
23236560--23236615	3	18.7	3	100	0	112	33	0	0	66	0.92
23239332--23239356	11	2.3	11	100	0	50	76	8	0	16	1.02
23240353--23240386	10	3.8	9	88	11	52	67	0	0	32	0.91
23240516--23240549	15	2.2	15	89	5	50	67	0	0	32	0.91
23246771--23246801	14	2.2	14	94	0	53	51	0	3	45	1.17
23246921--23247042	32	3.9	32	72	5	97	38	4	8	48	1.55
23249617--23249720	52	2.0	52	88	0	154	47	0	22	29	1.58
23252678--23252738	27	2.2	28	91	2	97	40	4	11	42	1.62
23253425--23253524	5	20.8	5	76	21	58	78	4	2	16	1.00
23253460--23253520	19	3.3	19	82	13	74	81	3	1	13	0.88
23253446--23253516	32	2.2	32	82	7	83	77	4	1	16	1.00
23253423--23253509	13	6.9	12	70	15	61	75	4	1	18	1.03
23254003--23254054	24	2.2	24	82	0	59	32	7	7	51	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23254488--23254681	74	2.7	71	79	7	167	40	13	14	31	1.84
23268308--23268514	41	5.1	39	77	7	146	40	16	16	26	1.89
23268335--23268514	81	2.2	81	84	4	220	40	15	16	28	1.88
23268695--23268819	34	3.5	34	75	12	124	38	16	15	30	1.89
23268682--23268825	74	2.0	73	87	1	207	40	15	13	29	1.86
23268939--23269020	34	2.4	34	89	0	119	43	15	12	28	1.83
23269701--23269746	4	11.2	4	86	4	56	19	2	4	73	1.10
23271506--23271530	13	1.9	13	100	0	50	4	8	0	88	0.64
23271484--23271849	148	2.5	143	79	7	375	21	19	8	49	1.75
23271644--23272005	148	2.5	146	84	3	444	24	19	7	49	1.73
23272069--23272116	12	4.1	12	84	13	64	0	12	0	87	0.54
23272071--23272116	22	2.1	22	92	4	76	0	10	0	89	0.50
23272071--23272114	10	4.3	10	86	13	63	0	11	0	88	0.51
23280343--23280446	52	2.0	52	88	0	154	47	0	22	29	1.58
23283406--23283466	27	2.2	28	91	2	97	40	8	11	39	1.71
23297541--23297590	16	3.2	16	77	2	57	24	0	28	48	1.52
23298027--23298051	12	2.1	12	100	0	50	56	0	0	44	0.99
23298904--23298955	22	2.3	22	83	3	59	36	19	21	23	1.95
23298927--23299209	87	3.3	86	80	3	316	38	20	20	20	1.93
23299774--23300267	65	7.6	66	80	6	522	35	14	18	30	1.91
23299774--23300267	33	15.1	33	80	5	450	35	14	18	30	1.91
23299795--23300267	98	4.8	97	83	3	540	35	14	18	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23301136--23301199	33	1.9	32	81	6	74	4	18	3	73	1.14
23308718--23308764	12	3.8	13	77	8	53	31	0	0	68	0.90
23309127--23309495	87	4.2	86	80	3	418	38	19	20	21	1.93
23310110--23310547	33	13.5	33	79	7	369	35	14	20	29	1.93
23310067--23310502	160	2.7	160	78	9	420	36	14	19	29	1.91
23311030--23311068	14	2.8	13	88	7	51	15	2	0	82	0.79
23311031--23311066	18	1.9	19	94	5	65	13	2	0	83	0.76
23317312--23317361	26	2.0	25	84	11	66	66	4	4	26	1.27
23318886--23318979	3	30.3	3	73	14	59	29	3	2	64	1.20
23320017--23320056	13	2.9	13	88	7	53	15	0	2	82	0.77
23320557--23320621	21	3.1	21	73	16	55	38	0	4	56	1.20
23320560--23320611	22	2.4	21	81	9	61	32	0	3	63	1.12
23320540--23320604	23	2.8	23	81	4	69	36	0	4	58	1.19
23320559--23320619	28	2.3	27	83	8	72	34	0	4	60	1.18
23332186--23332224	2	19.5	2	100	0	78	48	0	51	0	1.00
23332669--23332727	22	2.7	22	94	0	100	28	13	13	44	1.82
23333046--23333120	32	2.4	31	80	10	80	58	1	0	40	1.06
23333974--23334178	4	52.8	4	74	16	125	26	1	1	69	1.07
23333974--23334178	43	4.9	44	71	16	100	26	1	1	69	1.07
23334050--23334227	20	8.9	20	67	18	61	30	3	0	65	1.13
23334060--23334202	35	4.2	35	70	23	99	31	2	0	65	1.12
23335083--23335133	9	6.0	8	76	19	50	15	1	1	80	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23335087--23335122	15	2.3	16	90	4	56	13	2	0	83	0.76
23335149--23335422	59	4.7	60	86	5	341	44	6	12	37	1.67
23335149--23335427	117	2.4	117	86	3	375	43	6	12	37	1.68
23338095--23338144	22	2.3	22	83	10	59	54	4	22	20	1.61
23338585--23338615	15	2.1	15	93	0	53	19	29	6	45	1.75
23345695--23345752	23	2.5	24	88	8	84	79	0	15	5	0.90
23345696--23345752	12	4.9	11	81	10	69	78	0	15	5	0.91
23345724--23345782	30	2.0	30	83	6	75	74	1	18	5	1.09
23346788--23346931	42	3.5	42	82	2	150	22	15	20	40	1.90
23347111--23347397	4	72.5	4	71	15	131	26	3	2	67	1.19
23347124--23347270	43	3.5	43	80	15	157	23	3	2	70	1.16
23347208--23347398	17	11.1	17	71	19	123	30	3	1	64	1.15
23347212--23347357	30	4.5	34	74	17	123	30	2	1	65	1.15
23347215--23347398	37	4.9	38	74	19	127	30	3	1	64	1.16
23347325--23347410	40	2.2	40	89	4	129	29	5	0	65	1.16
23347670--23347707	20	2.0	20	89	5	60	26	2	7	63	1.35
23347934--23347974	10	4.1	10	82	17	50	63	0	36	0	0.95
23348326--23348666	58	5.8	57	84	10	393	42	6	12	39	1.68
23348393--23348484	30	3.2	28	63	28	66	38	4	15	42	1.67
23358077--23358105	2	15.0	2	92	7	51	48	0	0	51	1.00
23358321--23359002	231	2.9	230	85	4	917	41	9	4	44	1.57
23369388--23369470	41	2.1	38	79	18	91	36	3	7	53	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23369516--23369554	12	3.3	12	78	7	53	48	7	7	35	1.61
23369554--23369603	15	3.4	15	84	13	68	64	2	0	34	1.05
23369554--23369610	25	2.1	28	81	12	66	63	3	0	33	1.12
23369884--23369924	7	6.1	7	91	5	59	26	0	2	70	0.99
23369881--23369935	13	4.3	12	84	11	65	25	0	3	70	1.03
23369884--23369986	26	3.8	26	73	13	84	25	2	3	67	1.21
23369947--23369988	7	5.9	7	81	13	50	28	2	2	66	1.16
23370035--23370201	21	7.2	25	72	18	91	27	4	2	64	1.28
23370101--23370196	43	2.2	43	88	7	140	25	6	2	66	1.26
23370071--23370209	21	6.6	21	76	9	113	25	5	2	67	1.22
23370733--23370777	9	5.0	9	81	7	56	62	0	37	0	0.96
23371105--23371306	58	3.4	58	81	5	244	43	5	11	38	1.66
23371074--23371299	116	1.9	120	89	5	352	45	5	11	37	1.64
23372318--23372343	7	3.7	7	100	0	52	46	0	42	11	1.40
23373618--23373648	16	2.0	16	93	6	55	41	0	6	51	1.27
23374937--23375011	25	3.0	25	81	9	82	58	4	6	30	1.42
23375207--23375266	19	3.1	19	80	9	59	46	0	1	51	1.10
23375281--23375323	20	2.1	21	86	4	61	55	0	0	44	0.99
23376372--23376443	4	18.0	4	70	16	51	31	0	0	68	0.90
23376364--23376445	8	10.9	8	67	25	54	32	0	0	67	0.91
23376435--23376479	17	2.6	18	80	13	58	48	0	0	51	1.00
23376781--23376830	25	2.0	26	84	4	66	24	16	6	54	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23378363--23378455	44	2.1	44	96	4	170	45	8	2	44	1.46
23378477--23378511	13	2.7	13	86	0	52	51	5	0	42	1.25
23379211--23379271	31	2.0	31	83	0	77	18	3	26	52	1.60
23379284--23379343	14	4.1	15	77	10	61	21	0	28	50	1.49
23379281--23379343	29	2.2	29	85	5	83	20	0	31	47	1.51
23379281--23379388	15	7.4	14	67	7	54	22	0	28	48	1.57
23379320--23379388	29	2.4	29	82	0	84	23	1	24	50	1.57
23379522--23379576	18	3.2	17	78	19	60	23	3	0	72	1.00
23379690--23379728	11	3.6	11	82	6	53	25	0	0	74	0.82
23379662--23379729	21	3.0	21	81	10	73	32	0	0	67	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147