genome.fa.s445.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  57  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10985943--10985969	13	2.1	13	100	0	54	33	7	22	37	1.82
10989306--10989351	17	2.6	18	82	3	67	19	6	6	67	1.36
10989306--10989358	17	3.1	17	78	13	63	26	5	7	60	1.46
10989595--10989632	19	2.0	20	85	10	53	57	2	0	39	1.12
10993352--10993394	18	2.3	19	80	15	54	65	0	2	32	1.06
10995141--10995184	21	2.1	22	87	8	65	0	15	0	84	0.63
10995129--10995185	16	3.6	16	77	17	66	1	19	0	78	0.83
10995143--10995200	19	3.1	19	80	7	57	3	20	0	75	0.94
10999991--11000073	5	15.8	5	71	21	55	2	22	0	74	0.93
10999993--11000061	19	3.6	19	80	3	77	2	21	0	75	0.93
10999992--11000038	24	2.0	23	84	15	62	0	19	0	80	0.70
11000007--11000082	38	1.9	40	89	7	120	2	27	0	69	1.01
10999993--11000069	19	4.1	18	75	9	73	2	22	0	75	0.93
11000008--11000095	38	2.3	36	83	11	97	2	26	1	70	1.06
11000011--11000095	40	2.2	37	83	10	100	2	27	1	69	1.08
11000760--11001993	605	2.0	606	96	0	2283	39	13	16	30	1.88
11003063--11003103	20	2.0	21	86	13	59	75	2	7	14	1.12
11009880--11009915	18	2.0	19	89	10	58	61	2	0	36	1.11
11009888--11009940	21	2.3	23	84	9	65	69	0	1	28	0.99
11010248--11010287	20	2.1	19	85	4	53	35	2	2	60	1.24
11012286--11012345	24	2.4	24	83	13	68	66	1	3	28	1.17
11014916--11014991	40	1.9	40	83	0	98	23	9	9	57	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11016369--11016426	26	2.3	25	79	5	73	46	3	1	48	1.29
11016510--11016587	6	12.3	6	71	15	50	69	1	0	29	0.97
11016522--11016582	16	3.9	15	76	14	61	65	1	0	32	1.02
11016509--11016587	33	2.5	32	83	8	99	68	1	0	30	0.98
11019478--11019531	17	3.2	17	79	10	65	18	0	29	51	1.46
11021034--11021071	16	2.4	16	82	4	51	31	0	0	68	0.90
11021739--11021765	2	13.5	2	100	0	54	51	0	0	48	1.00
11027421--11027509	36	2.5	36	84	0	106	13	24	17	43	1.85
11028432--11028488	23	2.5	23	100	0	114	26	45	14	14	1.82
11029717--11029760	3	14.7	3	100	0	88	68	0	0	31	0.90
11031365--11031429	4	15.5	4	74	15	51	23	4	0	72	1.03
11031364--11031409	13	3.5	13	85	5	58	19	8	0	71	1.11
11031950--11032026	29	2.7	29	80	13	88	35	0	3	61	1.15
11031950--11032028	31	2.8	28	75	16	72	35	0	3	60	1.15
11031975--11032040	32	2.1	32	83	11	82	31	1	4	62	1.25
11032174--11032272	31	3.2	31	77	0	90	44	4	5	46	1.44
11032289--11032321	10	3.2	11	87	12	52	18	0	6	75	1.00
11032348--11032381	13	2.6	13	90	0	50	41	11	2	44	1.56
11032588--11032629	22	2.0	21	85	4	57	52	14	0	33	1.42
11033088--11033126	18	2.2	18	86	9	53	15	2	5	76	1.06
11033324--11033437	57	2.0	56	83	8	142	45	3	9	41	1.54
11033324--11033437	56	2.0	57	83	8	144	45	3	9	41	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11034210--11034249	7	5.7	7	87	0	62	20	0	55	25	1.44
11040519--11040560	22	2.0	21	86	13	59	69	2	28	0	1.01
11051750--11051854	53	2.0	52	87	5	149	43	5	19	31	1.74
11052036--11052108	35	2.1	35	86	0	101	19	2	34	43	1.65
11054285--11054374	28	3.2	28	87	0	126	25	22	17	34	1.96
11055511--11055556	12	3.8	12	78	16	51	65	0	0	34	0.93
11055709--11055751	18	2.4	18	84	7	52	65	0	4	30	1.13
11057141--11057178	20	1.9	20	89	10	60	73	15	0	10	1.09
11066866--11066904	14	2.6	14	88	8	51	79	0	15	5	0.90
11067706--11067860	49	3.2	49	76	13	140	29	12	18	40	1.87
11068196--11068270	28	2.7	28	85	0	105	25	24	18	32	1.97
11068360--11068411	27	1.9	27	92	7	88	75	7	0	17	1.03
11068359--11068417	27	2.2	26	85	14	84	76	6	0	16	1.00
11069623--11069665	18	2.4	18	84	7	52	65	0	6	27	1.18
11071359--11071385	2	13.5	2	100	0	54	51	0	0	48	1.00
11072985--11073469	257	1.9	260	83	5	646	40	11	8	38	1.72
11072985--11073501	256	2.0	258	82	6	620	39	12	8	40	1.72
11074794--11074820	2	13.5	2	100	0	54	51	0	0	48	1.00
11077548--11077588	18	2.2	19	86	4	57	12	9	0	78	0.98
11079738--11079783	21	2.1	21	84	11	58	2	17	0	80	0.81
11079746--11079774	14	2.0	15	93	6	51	3	13	0	82	0.79
11080621--11080658	16	2.3	17	86	13	53	52	0	5	42	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11085259--11085307	21	2.3	21	86	6	73	63	0	6	30	1.19
11091397--11091474	31	2.5	30	81	4	75	42	10	5	42	1.61
11091488--11091532	19	2.4	18	85	10	63	40	0	2	57	1.11
11092332--11092377	17	2.8	16	80	9	56	32	0	6	60	1.22
11092371--11092492	26	4.6	27	73	18	78	50	0	1	47	1.16
11092409--11092493	43	2.0	43	81	9	102	50	0	2	47	1.14
11093638--11093793	52	3.0	51	86	5	199	42	7	22	28	1.79
11094283--11094362	25	3.2	25	87	3	108	37	10	33	18	1.84
11094644--11094765	52	2.3	52	87	2	174	46	6	18	28	1.73
11094673--11094776	52	2.0	52	86	0	145	46	6	19	27	1.75
11097178--11097238	12	4.8	13	78	13	65	65	0	0	34	0.93
11097177--11097238	14	4.9	13	75	18	60	66	0	0	33	0.92
11097173--11097240	12	5.4	13	76	16	63	63	0	0	36	0.95
11097251--11097320	31	2.2	33	80	12	83	32	1	5	60	1.29
11098741--11098780	11	3.6	11	87	12	64	20	0	25	55	1.44
11098741--11098783	22	2.0	22	100	0	86	23	0	25	51	1.49
11098804--11098907	51	2.0	52	85	5	140	45	6	19	28	1.75
11100686--11100731	23	2.1	21	84	15	58	28	0	2	69	1.00
11113122--11113603	49	9.8	49	78	8	367	29	12	20	37	1.90
11113123--11113605	100	4.9	98	78	8	466	29	12	20	37	1.90
11113123--11113585	143	3.2	145	80	7	463	29	12	20	37	1.89
11114013--11114088	16	4.9	15	77	16	66	71	14	0	14	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11114048--11114072	13	1.9	13	100	0	50	72	20	0	8	1.10
11114032--11114081	22	2.3	21	80	10	64	72	14	0	14	1.14
11114046--11114110	28	2.2	30	81	10	82	75	9	3	12	1.15
11115055--11115107	21	2.5	20	82	14	63	28	1	0	69	0.99
11115417--11115462	19	2.6	18	80	10	58	67	2	0	30	1.03
11117667--11117720	13	4.2	13	74	25	53	46	0	3	50	1.19
11117656--11117732	29	2.6	31	75	19	76	53	0	2	44	1.14
11119312--11119337	2	13.0	2	100	0	52	50	0	0	50	1.00
11120402--11120465	29	2.2	29	91	0	110	26	3	20	50	1.63
11120520--11120558	20	2.0	20	94	0	69	25	0	2	71	0.98
11121063--11121127	14	4.6	14	74	11	60	32	1	3	63	1.19
11121063--11121127	29	2.3	29	84	7	89	32	1	3	63	1.19
11121107--11121139	13	2.6	13	90	4	50	39	3	0	57	1.14
11121275--11121365	31	2.9	31	74	9	87	45	8	4	41	1.55
11121473--11121521	19	2.4	22	80	13	59	34	10	4	51	1.55
11121667--11121711	11	4.2	11	85	2	65	55	8	0	35	1.31
11122162--11122195	11	3.0	11	95	4	59	8	0	2	88	0.62
11122162--11122195	12	2.9	12	91	4	52	8	0	2	88	0.62
11122400--11122516	56	2.0	57	82	8	139	47	3	9	39	1.53
11122988--11123018	16	1.9	16	100	0	62	58	6	6	29	1.48
11125052--11125148	25	3.8	25	74	12	92	49	0	3	47	1.17
11125103--11125147	14	3.1	14	83	3	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11125284--11125322	6	6.7	6	82	5	53	66	0	0	33	0.92
11125284--11125346	21	2.9	20	75	20	56	66	1	0	31	1.01
11125656--11125705	25	2.0	25	92	0	82	16	8	8	68	1.38
11126038--11126105	27	2.6	26	78	15	77	48	0	2	48	1.16
11126221--11126294	29	2.5	29	78	8	78	68	2	0	28	1.03
11126214--11126293	40	2.0	41	82	7	101	65	3	0	31	1.11
11126490--11126528	20	1.9	21	89	5	62	64	2	7	25	1.33
11141873--11141925	11	4.6	11	79	13	54	30	5	0	64	1.17
11144626--11144813	93	2.0	93	98	0	367	40	22	10	26	1.85
11148508--11148581	31	2.3	32	86	6	98	18	13	25	41	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147