genome.fa.s445.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  61  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11608481--11608571	27	3.6	25	76	12	87	38	2	1	58	1.18
11608511--11608600	36	2.4	36	85	7	119	38	1	0	60	1.04
11609683--11609749	32	2.1	32	94	0	116	29	26	17	25	1.98
11609730--11609772	19	2.3	19	91	0	68	25	20	20	32	1.97
11609751--11609911	57	2.8	57	95	0	250	27	23	19	28	1.99
11609768--11609863	31	3.3	31	69	19	96	26	22	21	29	1.99
11609914--11609970	19	3.0	19	76	0	69	29	22	17	29	1.97
11609932--11610160	51	4.4	50	83	8	233	29	25	17	27	1.98
11610090--11610128	19	2.1	19	90	0	60	28	23	20	28	1.99
11610360--11610413	25	2.2	25	96	0	99	38	14	9	37	1.79
11614037--11614085	21	2.3	20	83	10	62	14	0	22	63	1.30
11614048--11614089	21	2.0	21	95	0	75	11	0	21	66	1.23
11614052--11614091	18	2.2	18	86	0	62	12	0	20	67	1.22
11614443--11614475	15	2.1	16	88	5	50	18	0	9	72	1.10
11614658--11614696	17	2.3	18	86	8	55	58	0	2	38	1.12
11616820--11616884	12	5.3	12	85	7	87	69	0	0	30	0.89
11616815--11616892	12	6.4	12	76	15	56	67	0	0	32	0.90
11620308--11620357	24	2.1	23	85	14	66	50	18	2	30	1.58
11622479--11622508	13	2.2	14	94	5	53	0	16	0	83	0.65
11622559--11622595	4	9.2	4	87	0	56	24	0	5	70	1.08
11622638--11622674	3	13.0	3	88	11	60	32	0	0	67	0.91
11622629--11622675	20	2.4	19	86	10	67	34	0	2	63	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11622638--11622666	14	2.1	14	100	0	58	34	0	0	65	0.93
11622632--11622674	17	2.5	17	92	3	68	32	0	2	65	1.06
11623543--11623602	21	2.9	20	79	15	68	11	1	6	80	0.98
11623589--11623648	17	3.6	16	75	8	57	23	3	3	70	1.18
11623624--11623691	11	5.9	11	74	20	50	17	4	1	76	1.03
11623664--11623698	10	3.5	10	85	14	54	22	0	0	77	0.78
11623665--11623704	20	2.0	21	95	5	73	22	2	0	75	0.93
11623715--11624244	61	8.9	59	83	7	664	44	7	13	34	1.73
11626496--11626525	2	15.0	2	92	0	51	46	0	0	53	1.00
11628034--11628071	2	19.0	2	100	0	76	50	0	0	50	1.00
11630300--11630350	3	17.0	3	100	0	102	66	0	0	33	0.92
11631187--11631238	16	3.2	16	78	5	59	61	0	38	0	0.96
11635994--11636130	16	8.2	16	70	17	84	75	0	16	8	1.02
11636031--11636121	6	13.8	6	72	22	51	79	0	14	6	0.93
11636032--11636123	44	2.2	42	84	5	114	79	0	14	6	0.92
11636065--11636099	11	3.3	11	96	4	63	85	0	8	5	0.73
11637562--11638132	59	9.7	57	88	6	831	34	13	7	45	1.71
11637562--11638133	120	4.9	116	88	5	848	34	13	7	45	1.71
11638137--11638217	26	3.1	24	74	22	67	75	2	8	13	1.14
11638180--11638234	21	2.5	21	80	14	58	78	1	7	12	1.04
11638252--11638295	23	1.9	23	86	9	63	77	2	4	15	1.04
11638699--11638853	47	3.4	45	81	11	192	41	10	12	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11638699--11638853	21	7.0	21	77	11	141	41	10	12	34	1.79
11639553--11639614	5	11.6	5	80	19	56	17	3	0	79	0.87
11639556--11639613	6	9.5	6	83	12	57	15	3	0	81	0.83
11639553--11639614	17	3.8	16	78	18	74	17	3	0	79	0.87
11639561--11639608	7	7.3	7	92	2	57	14	4	0	81	0.84
11640516--11640552	16	2.2	17	90	4	58	83	0	8	8	0.80
11640634--11641047	170	2.4	170	80	9	437	43	8	11	36	1.72
11647079--11647119	21	1.9	22	85	14	59	41	17	0	41	1.49
11649221--11649246	2	13.0	2	100	0	52	50	0	0	50	1.00
11651200--11651239	19	2.1	19	95	0	71	30	12	15	42	1.83
11651987--11652011	2	12.5	2	100	0	50	52	0	0	48	1.00
11654786--11654907	63	1.9	63	93	0	208	27	16	22	33	1.95
11656001--11656080	31	2.5	32	88	6	110	36	20	10	33	1.86
11657562--11657606	20	2.2	20	84	0	54	42	11	6	40	1.67
11663088--11663248	37	4.4	37	73	10	116	31	10	6	51	1.62
11663142--11663247	38	2.8	37	78	5	106	30	11	9	49	1.70
11664270--11664297	2	14.0	2	100	0	56	50	0	0	50	1.00
11665050--11665131	28	2.9	28	71	8	69	60	1	0	37	1.04
11666522--11666561	20	2.0	20	95	4	73	27	0	0	72	0.85
11666633--11666674	23	1.9	21	85	9	57	64	7	2	26	1.32
11673958--11674018	31	1.9	32	90	3	97	37	8	11	42	1.71
11674191--11674221	7	4.6	7	96	4	55	77	0	0	22	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11674595--11674635	20	2.0	20	90	9	66	41	7	7	43	1.60
11675073--11675151	3	26.0	3	92	2	131	65	2	0	31	1.06
11675608--11675647	17	2.4	17	83	4	55	27	5	2	65	1.27
11676362--11676414	26	2.0	26	81	3	61	30	1	18	49	1.59
11676791--11676842	23	2.3	23	81	15	63	67	7	3	21	1.32
11677179--11677218	17	2.2	19	86	8	57	30	2	2	65	1.19
11677200--11677274	37	2.1	36	90	9	118	37	1	0	61	1.05
11677168--11677258	27	3.5	26	71	14	80	36	2	1	60	1.16
11678217--11678251	18	2.0	18	88	5	54	54	0	2	42	1.15
11678213--11678277	18	3.3	18	68	27	51	58	0	1	40	1.07
11680347--11680717	196	1.9	196	91	4	606	37	5	11	46	1.62
11688311--11688394	5	18.0	5	68	18	56	77	2	1	19	0.95
11688310--11688393	14	5.8	13	72	21	60	78	2	1	17	0.92
11688310--11688394	24	3.7	25	80	13	94	77	2	1	18	0.94
11688367--11688406	19	2.1	19	85	0	53	77	2	7	12	1.07
11689223--11689252	3	10.0	3	100	0	60	66	0	0	33	0.92
11689627--11690896	475	2.7	475	76	6	1104	44	13	22	19	1.85
11690437--11690650	117	1.8	117	81	2	268	42	15	23	18	1.88
11689765--11690882	595	1.9	594	79	6	1285	44	13	22	19	1.85
11689471--11690903	120	12.0	119	74	5	751	44	13	22	19	1.85
11690843--11690970	56	2.3	56	82	6	143	44	15	21	18	1.86
11690887--11691297	120	3.4	119	79	4	380	42	14	23	19	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11692011--11692059	12	4.1	11	82	12	53	2	12	2	83	0.82
11692009--11692064	14	4.0	14	77	15	62	1	14	1	82	0.84
11692010--11692053	9	4.9	9	80	8	54	2	11	0	86	0.66
11692351--11692432	42	2.0	42	87	4	121	19	15	18	46	1.84
11695916--11695975	30	2.0	31	90	3	95	36	8	11	43	1.71
11696572--11696612	20	2.0	20	86	9	57	41	7	9	41	1.66
11697042--11697100	3	20.0	3	92	3	102	66	1	0	32	1.02
11697360--11697394	16	2.1	17	89	5	54	31	0	5	62	1.18
11698313--11698365	26	2.0	26	81	3	61	30	1	18	49	1.59
11699142--11699181	17	2.2	19	86	8	57	30	2	2	65	1.19
11699163--11699237	37	2.1	36	87	9	109	38	2	0	58	1.12
11699397--11699429	15	2.2	15	89	10	50	57	0	0	42	0.98
11699962--11699994	15	2.1	16	88	5	50	18	0	9	72	1.10
11700177--11700215	17	2.3	18	86	8	55	58	0	2	38	1.12
11702351--11702393	14	2.9	15	83	13	54	67	0	0	32	0.91
11702351--11702408	28	2.0	29	90	3	91	68	0	0	31	0.89
11702353--11702409	12	4.3	14	72	22	52	70	0	0	29	0.88
11705978--11706079	47	2.2	47	80	3	116	45	16	4	33	1.69
11710608--11710638	7	4.4	7	100	0	62	0	16	0	83	0.64
11710850--11710897	5	9.6	5	86	13	64	18	0	0	81	0.70
11710844--11710891	7	6.7	7	81	15	55	16	2	0	81	0.79
11711792--11712137	188	1.8	186	86	6	502	47	8	9	34	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11716252--11716342	28	3.2	29	79	14	84	79	0	17	3	0.87
11716260--11716355	19	4.7	20	75	14	88	81	0	14	4	0.84
11716268--11716364	49	1.9	50	87	4	142	81	0	13	5	0.85
11716291--11716371	10	8.1	10	89	6	103	81	0	12	6	0.86
11716242--11716386	39	3.7	38	77	8	123	77	0	17	4	0.94
11716264--11716364	10	9.9	10	79	14	91	81	0	13	4	0.85
11717555--11717665	46	2.4	46	92	4	179	40	12	12	34	1.81
11717555--11717667	25	5.0	22	77	12	104	40	12	13	33	1.82
11717582--11717668	22	3.9	22	78	14	97	39	11	16	33	1.84
11717838--11717889	21	2.5	21	83	0	59	38	7	19	34	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147