Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  5  of  147  ( 17591 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
857036--857101
33
2.0
33
97
2
125
40
9
12
37
1.74
860720--860749
6
4.8
6
92
8
51
16
0
0
83
0.65
860720--860749
13
2.4
13
94
5
53
16
0
0
83
0.65
860789--860836
7
6.4
7
80
20
53
16
0
2
81
0.79
860788--860838
17
3.0
16
85
8
66
17
0
1
80
0.81
860733--860836
32
3.3
31
68
10
77
23
2
2
71
1.13
860789--860836
23
2.1
23
88
11
73
16
0
2
81
0.79
860854--860930
29
2.8
26
72
7
64
24
6
0
68
1.13
861884--862280
59
6.7
59
81
7
446
47
7
11
34
1.67
862312--862345
6
5.7
6
92
0
50
17
0
8
73
1.08
863083--863181
33
2.9
34
81
3
119
48
5
2
44
1.36
863546--863575
12
2.6
11
90
10
51
60
0
0
40
0.97
863548--863573
12
2.2
12
100
0
52
53
0
0
46
1.00
869730--869768
2
19.5
2
83
0
51
2
5
51
41
1.38
870045--870071
2
13.5
2
100
0
54
0
48
0
51
1.00
870071--870115
2
23.5
2
84
8
58
42
0
0
57
0.98
870151--870236
28
3.3
27
71
26
78
55
0
0
44
0.99
870165--870235
10
7.0
10
75
12
56
56
0
0
43
0.99
870175--870224
19
2.8
17
81
9
55
60
0
0
40
0.97
870162--870228
26
2.6
27
80
15
72
59
0
0
40
0.97
870115--870234
42
2.9
40
80
10
127
54
0
0
45
1.06
872544--872580
15
2.2
17
86
13
51
2
13
2
81
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
875553--875595
22
2.0
22
90
0
68
37
16
18
27
1.92
879406--879449
22
2.0
22
90
0
70
31
11
15
40
1.83
883455--883498
22
2.0
22
90
0
70
34
11
11
43
1.77
887254--887289
18
2.0
18
88
0
54
38
0
0
61
0.96
887432--887471
20
2.0
21
90
5
64
42
7
0
50
1.30
891024--891149
40
3.2
40
64
17
98
29
13
7
49
1.70
891024--891184
80
2.0
80
92
0
268
27
12
8
50
1.69
891554--891594
20
2.1
20
86
4
57
68
0
4
26
1.10
891617--891662
10
4.8
10
78
7
51
71
0
2
26
0.97
891618--891662
19
2.4
19
88
0
63
73
0
2
24
0.95
891653--891714
18
3.5
17
78
10
70
64
1
3
30
1.19
891661--891753
35
2.5
37
81
12
100
61
4
3
31
1.31
891849--892008
19
8.4
19
65
10
67
30
1
6
61
1.31
891988--892027
19
2.1
19
85
0
53
25
2
2
70
1.13
892113--892172
19
3.2
19
79
13
61
28
0
10
61
1.28
892380--892442
22
2.9
21
83
9
72
42
6
1
49
1.37
892506--892592
22
4.0
22
73
10
79
42
11
2
43
1.53
892756--892796
11
3.7
11
80
0
55
29
2
2
65
1.18
892751--892830
22
3.6
22
82
0
97
36
5
5
53
1.44
892751--892803
11
4.8
11
76
0
52
33
1
3
60
1.26
893246--893309
26
2.5
24
76
14
67
60
4
0
34
1.17
893341--893439
46
2.1
47
81
9
123
51
4
7
37
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
893335--893572
22
10.8
22
69
8
110
49
2
8
39
1.48
893448--893530
43
1.9
43
85
4
114
44
1
8
45
1.41
893661--893763
20
5.1
20
78
3
107
51
5
4
37
1.47
893666--893766
41
2.5
42
88
4
161
51
5
4
37
1.48
901575--901605
14
2.3
13
94
5
53
45
0
16
38
1.47
902117--902170
28
2.0
27
82
10
65
40
7
5
46
1.55
902182--902223
22
2.0
22
85
4
59
35
21
0
42
1.53
905724--906095
93
4.0
93
86
3
525
47
19
13
19
1.83
906571--906677
28
3.6
28
71
16
81
38
0
4
57
1.20
906695--906719
3
8.3
3
100
0
50
32
0
0
68
0.90
909002--909058
12
4.8
11
81
14
69
54
0
1
43
1.10
909002--909058
25
2.4
23
85
5
78
54
0
1
43
1.10
909860--909992
34
3.9
33
83
10
119
49
3
6
41
1.42
909890--909984
18
5.5
17
69
20
65
49
3
7
40
1.47
909878--909992
34
3.4
33
84
11
128
50
3
6
39
1.46
909983--910039
18
3.2
17
74
20
55
45
3
1
49
1.29
909975--910053
34
2.4
33
77
12
90
45
6
1
46
1.36
910009--910099
34
2.7
32
77
14
85
42
7
3
46
1.49
910312--910345
2
17.0
2
100
0
68
50
0
0
50
1.00
915843--915882
18
2.4
18
88
12
59
17
0
7
75
1.03
915842--915879
15
2.5
15
84
16
51
15
0
7
76
1.01
915912--915987
10
8.1
9
71
20
50
32
1
1
64
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
915912--915949
20
1.9
19
89
5
58
34
0
0
65
0.93
916691--916719
15
2.0
15
93
6
51
34
0
0
65
0.93
917149--917198
24
2.0
25
84
7
66
40
0
0
60
0.97
917550--917652
42
2.4
43
79
12
104
45
1
2
49
1.28
918495--918537
14
2.8
16
79
17
54
37
4
0
58
1.19
918975--919025
15
3.4
15
75
0
57
70
1
5
21
1.18
919637--919673
18
2.0
20
89
10
60
56
0
0
43
0.99
919661--919706
16
2.8
17
90
6
76
73
0
0
26
0.83
919882--919912
16
2.0
16
93
6
55
67
12
6
12
1.40
925113--925150
15
2.6
15
80
19
53
60
2
0
36
1.11
925465--925495
10
2.9
11
90
9
55
67
0
6
25
1.14
929267--929309
4
10.8
4
100
0
86
25
0
23
51
1.49
932359--932385
2
13.5
2
100
0
54
51
0
0
48
1.00
935920--935960
20
1.9
22
85
14
59
63
0
7
29
1.21
935957--936002
20
2.5
19
80
13
60
56
0
2
41
1.11
936028--936101
32
2.3
33
81
9
91
51
1
1
45
1.18
936037--936111
39
1.9
38
84
10
98
49
2
1
46
1.24
935986--936112
37
3.5
36
72
19
97
49
1
1
47
1.20
936515--936545
16
1.9
16
93
0
53
54
0
0
45
0.99
942529--942802
143
1.9
143
91
1
451
33
11
9
45
1.72
942860--942890
14
2.2
14
94
0
53
16
6
3
74
1.16
955363--955485
61
2.0
61
98
0
237
32
17
12
37
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
956955--956989
2
17.5
2
93
0
61
2
0
45
51
1.16
959087--959126
19
2.1
19
86
9
55
35
5
5
55
1.44
959107--959186
34
2.3
32
83
12
97
40
5
3
51
1.42
981454--981634
89
2.0
89
96
0
335
41
16
8
32
1.79
982746--982903
79
2.0
79
94
0
280
31
24
10
33
1.90
991412--991455
21
2.2
21
84
8
56
45
2
2
50
1.27
992906--992939
16
2.1
17
88
5
52
52
0
0
47
1.00
993525--993565
8
5.1
8
82
11
57
53
2
0
43
1.13
993525--993565
15
2.5
17
80
11
59
53
2
0
43
1.13
993525--993587
16
4.0
16
76
14
51
46
1
1
50
1.20
993511--993586
15
4.9
14
72
18
53
42
2
2
52
1.29
996785--996824
3
13.3
3
100
0
80
67
0
0
32
0.91
1000919--1000976
20
2.8
21
89
5
91
27
10
0
62
1.28
1006184--1006235
3
17.3
3
100
0
104
67
0
0
32
0.91
1006737--1006776
22
2.0
21
85
14
57
62
0
2
35
1.09
1008696--1008854
79
2.0
79
95
0
282
30
25
10
33
1.90
1015614--1015639
4
6.5
4
100
0
52
76
0
0
23
0.78
1018303--1018343
18
2.3
18
76
19
50
26
2
2
68
1.15
1018910--1018943
16
2.1
17
88
5
52
52
0
0
47
1.00
1019513--1019545
15
2.1
16
88
5
50
48
6
3
42
1.43
1019535--1019571
16
2.3
17
81
13
51
37
0
2
59
1.12
1021937--1021989
22
2.3
23
78
21
58
35
1
3
58
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1031912--1032040
57
2.3
57
83
4
154
41
4
13
41
1.65
1032184--1032209
4
6.5
4
100
0
52
26
0
0
73
0.84
1035475--1035547
27
2.6
28
79
8
78
71
0
24
4
1.04
1035729--1035766
20
1.9
20
88
0
58
65
7
15
10
1.45
1044634--1044658
11
2.3
11
100
0
50
60
0
0
40
0.97
1045431--1045458
2
14.0
2
100
0
56
0
50
0
50
1.00
1045458--1045486
2
14.5
2
100
0
58
48
0
0
51
1.00
1046654--1046868
111
1.9
111
91
0
349
26
19
13
39
1.90
1056855--1056893
21
1.9
20
85
15
53
35
23
15
25
1.94
1061489--1061518
12
2.5
12
88
0
51
60
0
0
40
0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147