genome.fa.s445.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  98  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17999113--17999151	18	2.2	18	90	9	62	38	12	2	46	1.56
17999208--17999245	19	2.0	20	89	5	60	26	7	13	52	1.67
17999282--17999454	41	4.2	41	76	2	143	31	15	15	37	1.89
17999289--17999460	81	2.1	82	80	2	193	31	15	15	37	1.89
17999668--18000321	101	6.5	101	74	9	375	32	16	14	36	1.89
18002726--18002851	6	20.5	6	70	21	75	45	31	3	19	1.68
18002757--18002851	25	3.8	25	76	4	86	45	32	4	17	1.68
18002754--18002851	12	8.0	12	77	8	90	43	33	4	18	1.69
18002798--18002851	19	2.9	18	81	15	58	46	31	5	16	1.70
18003507--18003581	37	2.0	37	100	0	150	29	21	10	38	1.87
18006051--18006090	11	3.7	11	90	3	64	52	0	5	42	1.23
18009829--18009876	18	2.7	18	93	0	78	29	8	29	33	1.86
18010224--18010261	6	6.3	6	96	0	67	34	47	0	18	1.49
18013405--18013444	20	2.0	20	95	0	71	55	17	5	22	1.61
18013407--18013453	20	2.3	20	88	0	67	61	19	2	17	1.44
18013455--18013509	22	2.5	22	79	8	58	63	5	0	30	1.17
18024149--18024196	25	2.0	25	91	4	80	39	0	16	43	1.48
18038877--18038919	16	2.6	16	82	13	52	79	0	9	11	0.95
18039838--18039870	17	1.9	17	88	11	50	69	9	9	12	1.36
18042804--18042829	3	8.7	3	100	0	52	0	34	0	65	0.93
18049990--18050048	25	2.4	25	83	11	68	83	3	11	1	0.85
18049997--18050044	18	2.8	18	81	12	57	85	2	10	2	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18049997--18050048	7	7.7	7	84	6	56	84	1	11	1	0.78
18050715--18050757	17	2.5	18	85	11	63	67	11	6	13	1.41
18053004--18053046	21	2.2	19	87	8	59	13	2	11	72	1.22
18053488--18053673	51	3.9	45	86	6	169	50	7	15	27	1.70
18053539--18053673	51	2.7	51	94	1	227	46	7	16	29	1.74
18059740--18059951	16	13.5	16	80	11	86	72	0	8	19	1.10
18059744--18059919	8	21.6	8	85	11	99	72	0	5	22	1.06
18059743--18059951	24	8.9	23	77	10	104	72	0	8	19	1.09
18059850--18059941	8	12.7	7	83	11	73	76	0	15	8	1.02
18059861--18059919	8	7.6	8	92	7	104	77	0	10	11	0.98
18059861--18059934	23	3.2	23	81	12	89	77	0	13	9	1.00
18059857--18059963	16	7.0	15	78	16	98	76	0	15	7	1.00
18059850--18059963	24	4.7	24	72	20	80	76	0	15	7	1.01
18061296--18061757	43	10.9	43	76	9	333	25	11	15	46	1.80
18061474--18061542	33	2.1	33	86	0	93	26	14	18	40	1.89
18061388--18061605	119	1.8	119	89	0	346	26	11	16	45	1.81
18061540--18061726	44	4.1	47	73	12	140	26	12	11	49	1.74
18061540--18061757	89	2.5	87	81	4	251	27	12	12	47	1.77
18061540--18061682	47	3.2	46	73	13	143	25	10	12	51	1.72
18061780--18061826	8	5.9	8	82	9	60	85	4	0	10	0.74
18062734--18062775	9	4.6	9	82	14	50	78	0	2	19	0.86
18063164--18063251	46	2.0	44	86	4	122	46	7	14	30	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18066589--18066622	12	2.8	12	100	0	68	17	55	0	26	1.42
18072471--18072819	161	2.2	162	82	3	409	39	18	12	29	1.87
18072753--18072876	64	1.9	64	86	3	178	45	19	8	27	1.78
18073219--18073267	25	2.0	25	95	0	89	40	14	4	40	1.64
18073893--18073933	20	2.0	20	85	0	55	39	12	2	46	1.54
18073683--18074144	234	2.0	234	87	2	678	40	9	8	41	1.67
18083759--18084058	10	30.4	10	69	12	113	56	5	1	37	1.32
18084236--18084265	11	2.7	11	94	0	51	43	0	0	56	0.99
18084341--18084375	9	3.9	9	88	0	52	48	0	5	45	1.26
18084244--18084375	18	7.2	17	69	15	77	49	3	3	44	1.33
18084270--18084375	9	11.9	8	71	16	50	50	3	3	42	1.38
18084863--18085055	9	20.2	9	69	17	97	41	2	5	50	1.37
18084899--18085056	10	16.2	10	67	15	80	43	1	5	50	1.32
18084994--18085063	11	6.7	11	73	12	58	45	0	7	47	1.30
18084949--18085052	20	5.3	20	76	5	106	40	0	6	51	1.35
18085450--18085516	34	1.9	36	82	11	86	26	4	2	65	1.26
18092558--18092628	30	2.4	31	85	4	92	21	9	14	54	1.68
18097256--18097287	16	1.9	17	93	6	57	78	6	15	0	0.95
18098196--18098225	7	4.3	7	91	0	51	13	10	43	33	1.77
18102651--18102693	18	2.5	17	77	7	50	16	2	39	41	1.61
18102665--18102779	50	2.3	50	87	4	160	15	0	35	47	1.52
18102941--18102991	20	2.6	21	84	12	72	5	1	41	50	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18104034--18104075	22	1.9	22	85	9	59	54	11	14	19	1.70
18104523--18104925	144	2.9	136	79	7	366	42	14	12	30	1.83
18104816--18105075	141	1.8	143	80	6	314	36	12	17	32	1.88
18105599--18105637	18	2.1	19	85	4	53	53	0	5	41	1.23
18105536--18105720	77	2.4	78	83	13	229	44	5	8	41	1.58
18106122--18106155	18	1.9	17	94	5	59	32	0	0	67	0.91
18106201--18106248	18	2.8	18	78	18	57	37	0	2	60	1.09
18106206--18106260	23	2.3	23	75	3	56	47	0	1	50	1.11
18106301--18106364	29	2.2	30	76	18	73	57	3	3	35	1.30
18117421--18117459	20	1.9	21	84	5	53	10	15	2	71	1.23
18122828--18122854	2	13.5	2	100	0	54	48	0	0	51	1.00
18133416--18133484	12	5.8	12	82	1	50	23	5	5	65	1.37
18133424--18133523	6	16.3	6	80	4	65	23	4	7	66	1.34
18133538--18133592	21	2.7	20	75	8	56	83	5	7	3	0.89
18134635--18134706	22	3.2	23	88	7	103	11	4	15	69	1.32
18134678--18134737	17	3.5	17	76	17	54	15	1	13	70	1.26
18134702--18134737	18	2.1	17	89	5	54	13	0	11	75	1.06
18134871--18134951	24	3.4	24	87	3	119	35	3	7	53	1.47
18134948--18135107	55	3.0	55	86	6	229	28	5	10	55	1.55
18135036--18135081	23	2.0	23	88	12	69	23	4	10	60	1.47
18134981--18135082	20	5.2	20	73	20	90	28	4	9	56	1.52
18135067--18135127	30	2.0	31	84	9	81	31	6	13	49	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18135297--18135369	18	4.5	17	65	22	50	34	5	10	49	1.61
18138558--18138607	20	2.6	20	78	6	59	56	10	28	6	1.56
18140520--18140562	20	2.1	20	83	12	52	51	0	18	30	1.47
18143280--18143317	13	2.9	14	84	7	53	42	0	18	39	1.50
18143343--18143396	20	2.7	19	75	11	54	29	7	12	50	1.68
18143866--18143900	16	2.2	16	89	0	52	28	14	14	42	1.84
18144551--18144583	14	2.4	14	100	0	66	36	21	6	36	1.78
18154213--18154282	31	2.3	31	82	7	81	75	4	12	7	1.15
18154242--18154280	20	2.0	20	84	0	51	79	5	7	7	1.05
18154711--18154777	26	2.6	27	83	11	86	73	0	17	8	1.09
18154767--18154808	12	3.6	12	77	3	50	78	4	9	7	1.08
18156219--18156256	19	1.9	20	89	10	60	36	21	15	26	1.93
18157150--18157233	43	2.0	43	82	0	105	33	5	16	44	1.72
18157344--18157411	35	1.9	35	82	5	84	32	19	8	39	1.82
18157427--18157534	47	2.3	47	88	4	157	27	11	18	42	1.84
18165565--18165606	15	2.9	14	89	10	66	76	16	2	4	1.07
18165910--18165978	28	2.5	28	75	13	70	75	1	14	8	1.11
18167573--18167607	18	1.9	18	94	0	61	31	25	5	37	1.80
18167935--18168713	36	21.7	35	71	12	205	19	19	14	46	1.84
18167928--18170999	72	42.8	72	73	8	1068	19	19	14	46	1.83
18167928--18170760	108	26.3	107	73	9	1064	19	19	13	46	1.83
18167935--18168552	287	2.2	287	84	5	786	19	19	13	47	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18168118--18170948	36	78.8	36	72	9	924	19	19	14	46	1.83
18171047--18171105	19	3.1	19	81	15	61	77	13	3	5	1.05
18171064--18171093	16	1.9	15	93	6	51	80	16	3	0	0.85
18171099--18171132	13	2.7	13	90	4	52	82	0	17	0	0.67
18175517--18175561	20	2.2	20	84	7	56	44	20	4	31	1.71
18177465--18177560	49	2.0	49	85	8	133	29	19	8	42	1.80
18177584--18177621	14	2.7	14	91	0	58	47	26	0	26	1.52
18177609--18177684	19	4.0	19	76	6	91	40	44	1	13	1.51
18177612--18177701	37	2.4	39	83	9	114	43	41	2	13	1.56
18177612--18177701	19	4.7	19	76	6	85	43	41	2	13	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147