genome.fa.s445.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  104  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19067327--19067360	8	4.1	8	85	7	50	26	0	0	73	0.83
19068989--19069070	40	2.0	41	90	4	130	24	9	9	56	1.62
19073643--19073761	51	2.4	49	85	2	157	21	2	52	23	1.59
19087296--19087379	45	1.9	43	85	4	114	33	10	15	40	1.82
19087749--19087851	45	2.4	44	76	14	106	42	0	1	54	1.18
19089683--19089720	2	19.0	2	88	0	58	50	5	0	44	1.24
19096610--19096657	10	4.9	10	78	21	57	45	10	10	33	1.72
19096603--19096657	28	2.0	28	100	0	110	45	10	10	32	1.74
19104345--19104382	3	12.7	3	100	0	76	31	0	0	68	0.90
19107150--19107254	30	3.6	30	78	10	101	40	1	8	48	1.45
19114608--19114636	9	3.0	10	90	10	51	62	0	20	17	1.33
19116116--19116169	22	2.5	22	75	0	54	33	1	11	53	1.47
19116138--19116188	16	3.3	16	81	5	52	31	0	9	58	1.30
19117616--19117641	11	2.4	11	100	0	52	88	0	11	0	0.52
19118939--19119002	33	1.9	33	93	0	110	32	34	14	18	1.91
19123869--19123929	19	3.2	19	77	6	61	40	1	0	57	1.08
19125878--19125993	33	3.6	33	86	3	139	38	8	7	44	1.64
19128976--19129022	17	2.6	18	83	10	60	21	2	14	61	1.43
19129287--19129355	33	2.0	33	88	5	102	53	15	2	27	1.56
19130650--19130823	86	2.0	86	93	0	294	37	17	13	31	1.89
19133869--19133928	31	1.9	31	96	0	111	36	16	10	36	1.82
19135356--19135406	15	3.5	15	76	12	54	19	0	1	78	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19138748--19138798	25	2.0	25	100	0	102	35	11	41	11	1.78
19139424--19139466	23	1.9	23	85	4	61	39	6	18	34	1.78
19139460--19139509	24	2.1	24	96	0	91	30	4	14	52	1.59
19147947--19147988	2	21.0	2	85	0	57	47	4	2	45	1.36
19147947--19147988	14	3.0	14	92	0	66	47	4	2	45	1.36
19154856--19154891	17	2.1	17	89	0	54	47	8	0	44	1.33
19158771--19158823	14	3.7	14	75	12	54	16	0	26	56	1.41
19158666--19158882	28	7.4	30	70	17	104	19	3	29	47	1.67
19158685--19158877	87	2.2	88	80	9	214	21	3	29	46	1.68
19158917--19158973	29	2.0	28	86	6	80	33	1	17	47	1.58
19160147--19160193	20	2.2	20	82	14	51	17	2	0	80	0.80
19160472--19160726	37	6.9	37	74	8	187	50	17	18	14	1.79
19160471--19160726	74	3.4	74	76	12	238	50	17	18	14	1.79
19160897--19161224	33	9.9	33	71	10	204	31	18	17	32	1.94
19160946--19161224	99	2.8	99	76	6	294	32	18	17	32	1.94
19160896--19161228	66	5.0	66	78	1	299	31	18	17	33	1.94
19162456--19162489	11	3.0	11	95	4	59	2	8	0	88	0.62
19162456--19162489	12	2.9	12	91	4	52	2	8	0	88	0.62
19162452--19162506	20	2.7	21	77	5	60	5	14	0	80	0.89
19165323--19165353	4	7.8	4	92	0	53	45	0	25	29	1.54
19166723--19166761	19	2.0	19	85	5	51	2	17	2	76	1.01
19168695--19168752	29	2.0	29	83	6	73	27	0	22	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19168810--19168917	28	3.8	27	75	15	85	20	0	26	52	1.46
19169413--19169516	30	3.4	31	76	12	90	25	2	29	42	1.69
19169494--19169562	14	4.8	14	78	5	66	30	2	21	44	1.67
19169494--19169562	29	2.4	29	80	9	95	30	2	21	44	1.67
19169681--19169735	3	18.3	3	83	14	69	29	0	1	69	0.99
19169899--19169941	15	2.8	15	83	13	52	18	4	0	76	0.95
19169900--19169939	21	1.9	21	85	10	55	17	5	0	77	0.94
19176635--19176691	24	2.4	24	72	13	64	17	12	43	26	1.84
19177594--19177692	37	2.8	36	81	7	114	37	11	10	41	1.74
19182162--19182186	13	1.9	13	100	0	50	24	8	4	64	1.38
19183697--19183726	15	1.9	16	93	6	53	60	3	0	36	1.14
19186407--19186442	2	18.0	2	88	0	54	50	2	0	47	1.15
19187925--19188008	31	2.7	31	92	1	134	25	14	19	41	1.88
19188049--19188076	2	14.0	2	100	0	56	50	0	0	50	1.00
19189161--19189201	22	1.9	21	85	5	55	36	0	2	60	1.10
19194703--19194768	20	3.3	20	68	16	64	34	4	31	28	1.78
19194689--19194776	40	2.2	40	97	2	169	30	4	32	31	1.78
19195779--19195808	2	15.0	2	100	0	60	50	0	0	50	1.00
19199026--19199068	19	2.3	19	87	0	59	65	9	11	13	1.48
19199034--19199081	19	2.5	19	79	3	51	66	8	16	8	1.42
19199811--19199916	42	2.5	42	89	0	149	33	15	10	40	1.81
19199809--19199932	21	6.0	21	81	2	108	33	15	9	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19201996--19202052	8	7.1	8	77	0	60	38	0	1	59	1.08
19202004--19202073	30	2.3	29	78	7	77	44	0	1	54	1.09
19202042--19202094	21	2.6	21	94	5	92	49	0	0	50	1.00
19202864--19203812	240	4.0	238	81	6	1015	35	11	12	40	1.80
19202894--19203812	478	1.9	479	82	4	1147	35	11	12	40	1.80
19204921--19205258	58	5.7	58	78	12	335	36	12	6	44	1.68
19205097--19205229	65	2.0	65	89	5	205	39	9	5	45	1.60
19205270--19205328	15	3.8	15	78	14	66	76	0	3	20	0.93
19205276--19205325	5	9.8	5	77	16	50	78	0	2	20	0.86
19205277--19205338	10	6.1	10	77	17	56	75	0	4	19	0.97
19205281--19205328	6	7.7	6	79	9	51	77	0	2	20	0.88
19205866--19205902	19	1.9	19	94	0	65	43	35	5	16	1.71
19205986--19206024	19	2.0	19	85	5	51	20	33	5	41	1.74
19206245--19206275	12	2.7	11	90	9	53	80	0	0	19	0.71
19206262--19206328	21	3.2	21	70	17	59	65	4	5	23	1.34
19206328--19206425	14	7.4	14	65	17	57	64	4	4	27	1.30
19206351--19206426	25	3.0	25	78	17	77	64	3	3	27	1.29
19206446--19206498	16	3.3	15	84	12	61	73	0	0	26	0.83
19206408--19206512	22	4.5	23	72	21	85	71	2	1	23	1.10
19206447--19206513	7	9.6	7	79	14	52	73	1	0	25	0.92
19206466--19206513	15	3.2	15	85	11	55	77	2	0	20	0.88
19206703--19207034	43	7.8	43	86	4	419	39	19	16	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19206712--19207034	85	3.8	84	88	4	454	39	19	16	24	1.91
19206703--19207028	128	2.6	126	88	5	462	39	19	16	24	1.92
19208039--19208089	22	2.3	23	86	10	70	7	13	0	78	0.96
19208062--19208094	14	2.3	14	94	5	57	6	15	0	78	0.93
19218496--19218799	59	5.2	59	83	6	314	37	12	6	43	1.69
19218496--19218769	122	2.3	122	83	5	346	37	13	6	42	1.70
19218667--19218759	29	3.1	30	68	20	77	35	10	5	48	1.61
19218794--19218847	15	3.5	14	76	18	54	75	0	3	20	0.95
19218789--19218859	18	3.8	18	77	15	72	74	0	7	18	1.03
19218796--19218847	10	5.1	10	76	21	54	75	0	3	21	0.97
19218876--19218919	23	2.0	21	86	8	61	68	0	0	31	0.90
19219150--19219193	21	2.0	22	86	4	63	0	50	0	50	1.00
19219819--19219917	14	7.4	14	69	17	59	63	4	3	29	1.27
19219842--19219918	26	3.0	25	78	19	79	63	3	2	29	1.25
19219894--19220020	10	12.7	10	69	19	56	73	1	1	23	1.01
19219884--19220016	45	3.0	45	75	18	129	70	2	1	25	1.07
19219937--19220016	15	5.4	14	81	14	81	75	0	0	25	0.81
19219949--19220020	22	3.3	23	83	12	98	77	0	0	22	0.76
19219877--19219998	65	1.9	61	83	9	156	69	2	1	26	1.10
19220050--19220131	38	2.2	38	95	0	146	28	20	23	28	1.99
19220339--19220399	28	2.2	28	81	0	68	24	1	26	47	1.61
19223082--19223162	40	2.0	40	95	0	144	35	16	13	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19223634--19223704	35	2.0	35	91	0	115	38	21	9	30	1.86
19224848--19224885	19	2.1	18	90	5	58	42	15	0	42	1.47
19227843--19227895	21	2.5	22	87	6	81	18	37	13	30	1.89
19252154--19252193	20	2.0	20	100	0	80	60	5	10	25	1.49
19258576--19258661	39	2.2	40	87	6	122	43	2	10	44	1.51
19261663--19261722	21	3.1	19	79	11	68	35	6	6	51	1.54
19265462--19265504	21	2.0	21	90	0	68	30	30	20	18	1.97
19285813--19285911	45	2.2	45	92	0	162	44	15	8	32	1.75
19288532--19288576	20	2.2	20	84	7	56	13	0	11	75	1.05
19289022--19289052	13	2.4	13	94	0	53	74	0	9	16	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147