genome.fa.s445.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  116  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20918045--20918207	48	3.3	49	77	10	181	37	18	11	33	1.86
20918937--20918973	18	2.1	18	100	0	74	16	10	24	48	1.77
20918939--20918981	18	2.4	18	92	0	68	13	13	16	55	1.69
20929831--20929869	18	2.2	18	90	0	60	64	5	5	25	1.35
20929839--20929910	18	4.0	18	81	12	85	55	1	5	37	1.32
20929839--20929923	18	4.7	17	78	11	73	58	2	4	34	1.31
20930138--20930204	27	2.6	27	79	9	68	31	1	4	62	1.24
20930124--20930226	43	2.4	44	80	3	102	31	1	2	64	1.19
20930149--20930223	35	2.1	36	85	7	100	26	2	4	66	1.22
20931570--20931609	21	1.9	21	94	0	71	60	0	7	32	1.25
20939385--20939452	18	3.7	18	72	5	55	19	1	7	72	1.16
20943309--20943453	40	3.6	40	81	3	166	36	19	13	31	1.90
20943881--20944002	64	1.9	63	86	6	176	27	8	19	44	1.79
20943881--20944035	64	2.4	63	81	9	145	28	7	19	44	1.78
20944378--20944515	59	2.4	59	81	6	156	26	15	18	39	1.91
20944450--20944751	99	3.2	94	80	8	261	25	14	17	42	1.87
20944526--20944741	99	2.2	94	88	5	308	23	14	18	43	1.86
20944656--20944786	59	2.3	59	81	5	142	24	16	18	40	1.91
20945167--20945255	32	2.7	33	74	8	92	32	16	15	34	1.91
20945086--20945293	33	6.4	32	73	8	152	30	16	16	36	1.92
20945768--20945843	34	2.2	34	95	0	134	26	13	19	40	1.88
20945935--20945959	1	25.0	1	100	0	50	0	0	0	100	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20946628--20946675	19	2.8	18	82	14	57	27	2	0	70	0.98
20947645--20947678	17	1.9	18	88	5	52	52	2	2	41	1.31
20947645--20947681	16	2.2	18	90	9	60	48	2	2	45	1.30
20953867--20953944	39	2.0	38	90	2	120	44	14	11	29	1.80
20955565--20955681	62	1.9	61	89	1	180	28	12	14	44	1.82
20955629--20955734	50	2.1	49	82	5	131	29	10	14	46	1.77
20955859--20955922	13	4.8	13	79	11	67	43	35	4	15	1.68
20955896--20956048	7	23.1	7	66	19	62	47	33	2	16	1.61
20956009--20956054	19	2.4	19	85	10	58	45	39	2	13	1.55
20956800--20956833	15	2.2	16	89	5	52	38	0	0	61	0.96
20957818--20957864	21	2.2	21	88	7	69	65	2	8	23	1.31
20962692--20962717	9	2.9	9	100	0	52	88	0	11	0	0.52
20963056--20963151	33	2.8	32	75	12	86	73	0	23	2	0.93
20965145--20965698	40	14.0	40	74	8	283	37	14	11	36	1.82
20965145--20965654	80	6.4	79	77	8	315	37	14	11	36	1.82
20965929--20965973	15	2.9	15	83	6	54	84	8	4	2	0.84
20967649--20967803	13	11.7	13	72	18	81	46	34	1	17	1.56
20967649--20967825	26	6.8	25	71	18	121	46	35	1	16	1.55
20967654--20967803	7	22.7	7	71	15	88	47	34	1	17	1.56
20980398--20980445	22	2.2	22	88	0	69	58	8	0	33	1.28
20980566--20980609	12	3.4	13	82	17	56	84	6	2	6	0.86
20982841--20983122	8	35.6	8	70	5	144	22	3	26	47	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20982841--20983160	16	20.7	16	69	14	170	23	3	26	46	1.69
20982921--20983044	40	3.1	40	89	0	185	23	2	25	49	1.62
20982841--20983208	8	46.4	8	68	13	120	22	3	27	46	1.68
20983181--20983214	15	2.4	14	90	5	50	20	2	29	47	1.65
20984815--20985112	149	2.0	147	90	2	472	22	12	19	44	1.84
20985832--20985873	22	1.9	22	85	9	59	30	16	16	35	1.92
20985866--20986197	124	2.7	123	83	4	407	37	18	12	32	1.88
20986299--20986447	40	3.8	40	77	7	135	33	10	17	38	1.83
20986303--20986467	40	4.2	39	73	4	116	35	11	15	36	1.84
20986510--20986557	23	2.1	23	88	0	69	22	14	2	60	1.45
20986526--20986570	23	2.0	23	82	8	56	26	11	4	57	1.52
20988314--20988398	36	2.4	34	77	13	82	9	15	1	74	1.13
20989582--20989620	11	3.7	11	86	10	55	0	20	0	79	0.73
20991994--20992104	36	3.1	36	83	5	143	34	10	24	30	1.90
20994278--20994361	40	2.1	40	88	0	123	22	3	25	48	1.66
20994279--20994496	16	13.6	16	66	13	83	24	3	23	48	1.67
20994396--20994497	16	6.4	16	74	8	91	26	0	22	50	1.56
20994278--20994512	24	9.8	24	69	9	122	24	3	22	48	1.66
20994607--20994651	17	2.6	17	78	0	54	13	4	28	53	1.59
20994282--20994560	8	35.1	8	71	4	64	23	2	25	48	1.65
20994648--20994724	23	3.3	23	79	0	73	27	3	24	44	1.71
20994984--20995010	3	9.0	3	100	0	54	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20995309--20995372	24	2.7	24	79	18	71	31	6	4	57	1.44
20995369--20995422	22	2.4	22	84	3	72	66	5	5	22	1.34
20997472--20997510	18	2.2	18	100	0	78	46	5	5	43	1.48
20997507--20997560	22	2.4	23	84	9	76	59	1	0	38	1.08
21001179--21001314	71	1.9	71	95	0	245	27	6	10	55	1.58
21011100--21011156	25	2.3	25	75	0	60	40	29	7	22	1.80
21011145--21011472	80	4.1	80	85	4	410	42	24	9	24	1.84
21011190--21011318	40	3.2	40	66	8	109	46	24	7	20	1.77
21012150--21012489	187	1.8	186	80	3	412	40	10	12	36	1.78
21012394--21012670	146	1.9	146	86	0	392	41	10	12	35	1.78
21017378--21017402	13	1.9	13	100	0	50	44	24	8	24	1.80
21021739--21022419	235	2.9	232	82	6	764	33	8	12	45	1.73
21023289--21023363	20	3.8	20	96	0	132	32	16	6	45	1.73
21023615--21023702	46	1.9	46	80	0	104	39	5	11	43	1.64
21023950--21024001	17	2.9	17	75	10	50	42	7	3	46	1.51
21024020--21024086	35	1.9	35	84	0	89	35	11	8	43	1.73
21024167--21024224	18	3.3	18	85	2	73	34	12	13	39	1.82
21024141--21024267	35	3.6	34	76	9	121	42	13	7	37	1.71
21024124--21024282	17	9.2	17	79	5	113	40	13	6	38	1.72
21024377--21024418	17	2.5	17	81	11	52	26	11	14	47	1.78
21024472--21024626	43	3.6	43	80	0	159	31	11	12	43	1.79
21025036--21025082	19	2.5	19	92	0	76	74	6	10	8	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21025038--21025096	17	3.3	17	80	7	55	72	5	16	5	1.20
21025995--21026074	6	12.5	6	75	21	65	20	2	1	76	0.97
21026001--21026056	21	2.7	21	86	2	69	17	3	1	76	1.01
21026001--21026074	19	3.8	20	78	10	73	20	2	1	75	1.00
21026161--21026302	24	6.0	23	82	10	130	35	4	7	52	1.50
21026144--21026302	48	3.3	46	78	14	153	34	3	8	53	1.49
21026141--21026317	71	2.4	72	81	11	186	33	3	9	53	1.52
21026413--21026493	19	4.2	19	73	10	74	33	7	8	50	1.61
21026410--21026496	39	2.2	39	83	4	104	33	6	8	51	1.58
21027307--21027348	21	2.0	21	95	0	75	45	23	11	19	1.83
21028696--21028883	102	1.9	101	85	5	263	34	11	8	45	1.71
21028980--21029023	3	14.7	3	95	0	79	68	2	0	29	1.02
21029396--21029441	19	2.5	19	85	3	58	43	17	15	23	1.87
21029749--21029833	34	2.5	33	83	9	100	69	1	2	27	1.08
21035399--21035444	23	2.0	23	87	8	67	23	0	6	69	1.11
21035407--21035455	23	2.2	22	85	10	64	18	0	8	73	1.07
21037046--21037082	14	2.8	14	88	8	51	40	0	5	54	1.24
21038280--21038308	2	14.5	2	100	0	58	0	48	0	51	1.00
21041064--21041104	13	3.3	13	83	13	59	65	12	4	17	1.42
21041109--21041180	24	3.0	24	83	6	83	54	9	5	30	1.56
21041118--21041189	24	3.0	23	82	8	81	59	8	4	27	1.45
21041485--21041528	15	3.0	15	93	3	72	0	36	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21041697--21041745	21	2.5	20	77	16	57	67	4	4	24	1.26
21042133--21042163	11	2.8	11	95	0	53	64	6	0	29	1.18
21045638--21045756	3	40.3	3	79	12	122	32	5	0	61	1.24
21046663--21046725	25	2.4	27	79	10	78	19	1	4	74	1.08
21047510--21047581	35	2.1	35	94	0	126	23	9	4	62	1.43
21057602--21057871	114	2.4	114	81	5	328	26	23	13	37	1.91
21057631--21058126	114	4.4	114	76	4	390	26	23	12	37	1.91
21057910--21058322	114	3.6	113	76	5	303	25	24	12	37	1.91
21057631--21058268	342	1.9	342	79	4	723	26	23	13	37	1.91
21058610--21058668	20	2.9	21	87	10	86	35	0	13	50	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147