Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  139  of  147  ( 17591 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25429759--25429784
13
2.0
13
100
0
52
84
0
0
15
0.62
25432922--25433097
87
2.0
88
95
1
318
23
15
23
37
1.93
25441811--25441843
2
16.5
2
100
0
66
0
48
0
51
1.00
25445560--25445603
6
7.0
6
90
10
70
84
0
0
15
0.63
25445560--25445603
13
3.5
13
93
6
81
84
0
0
15
0.63
25445560--25445603
19
2.3
19
92
7
72
84
0
0
15
0.63
25446587--25446642
25
2.3
24
87
6
78
53
0
5
41
1.24
25458213--25458265
27
2.0
26
92
7
90
52
20
22
3
1.62
25459699--25459745
21
2.2
21
85
14
62
55
0
0
44
0.99
25459992--25460052
28
2.1
28
81
9
68
32
8
14
44
1.75
25460548--25460599
18
2.8
18
77
11
52
30
13
0
55
1.38
25465029--25465072
19
2.2
20
80
4
54
65
0
0
34
0.93
25470936--25470966
12
2.6
12
89
0
53
61
0
0
38
0.96
25471058--25471112
13
4.4
13
80
11
53
49
0
0
50
1.00
25471106--25471134
9
3.0
10
90
10
51
37
0
0
62
0.96
25471249--25471287
20
2.0
20
85
10
53
51
2
5
41
1.38
25478350--25478396
17
2.9
17
81
9
62
40
0
0
59
0.97
25479202--25479253
20
2.7
19
72
16
52
34
0
0
65
0.93
25479239--25479273
18
1.9
18
88
11
54
34
0
0
65
0.93
25487212--25487260
24
2.0
24
84
0
62
53
6
0
40
1.26
25488720--25488761
14
3.2
13
86
6
50
21
0
4
73
1.01
25488730--25488770
19
2.1
19
86
4
55
19
2
4
73
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25489221--25489262
16
2.6
17
81
11
61
61
0
0
38
0.96
25489221--25489269
24
2.0
24
84
7
64
63
0
0
36
0.95
25490196--25490238
22
2.0
22
86
9
61
58
0
6
34
1.25
25490396--25490463
26
2.7
25
76
13
68
39
1
5
52
1.34
25491466--25491513
22
2.2
22
92
3
80
54
0
0
45
0.99
25494281--25494316
13
2.8
13
91
4
56
44
0
0
55
0.99
25495188--25495221
16
2.1
16
88
0
50
35
0
0
64
0.94
25495198--25495259
31
1.9
33
84
12
85
37
0
1
61
1.06
25495230--25495275
23
2.0
24
86
4
67
43
0
0
56
0.99
25497138--25497167
2
15.0
2
100
0
60
50
0
0
50
1.00
25497664--25497693
10
3.0
10
100
0
60
50
10
10
30
1.69
25504126--25504184
30
2.0
30
89
0
91
52
0
0
47
1.00
25504127--25504193
30
2.2
30
84
5
82
56
0
0
43
0.99
25504184--25504219
12
3.1
11
88
11
54
66
0
0
33
0.92
25504889--25504931
21
2.0
21
82
8
52
53
6
0
39
1.28
25505648--25505691
3
14.7
3
100
0
88
0
31
0
68
0.90
25509265--25509303
16
2.4
17
87
8
55
61
0
0
38
0.96
25509270--25509303
8
4.2
8
85
14
52
58
0
0
41
0.98
25509647--25509689
23
1.9
23
90
4
70
67
2
0
30
1.03
25509961--25509992
16
2.1
16
94
5
57
37
0
0
62
0.95
25512948--25512977
8
3.8
8
100
0
60
60
0
0
40
0.97
25513200--25513254
27
2.1
26
83
10
67
49
0
3
47
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25513234--25513306
13
5.5
13
72
20
53
63
0
4
32
1.14
25517037--25517072
16
2.2
16
90
0
54
33
2
0
63
1.08
25519930--25519964
16
2.2
16
89
0
52
37
0
0
62
0.95
25524082--25524121
19
2.0
20
86
13
57
47
7
0
45
1.31
25527332--25527383
23
2.3
22
90
6
77
42
0
3
53
1.19
25527436--25527509
29
2.6
29
81
10
89
52
6
1
39
1.36
25527550--25527581
3
10.7
3
100
0
64
65
0
0
34
0.93
25528156--25528199
7
6.4
7
86
5
63
52
2
0
45
1.13
25546787--25546841
23
2.3
24
84
6
67
72
1
0
25
0.94
25555817--25555845
2
14.5
2
100
0
58
51
0
0
48
1.00
25559867--25559915
16
3.0
17
75
19
59
63
0
0
36
0.95
25561964--25561990
2
13.5
2
100
0
54
0
48
0
51
1.00
25561990--25562019
2
15.0
2
100
0
60
50
0
0
50
1.00
25571474--25571499
13
2.0
13
100
0
52
92
0
7
0
0.39
25572838--25572908
30
2.4
30
83
4
81
46
11
5
36
1.63
25577272--25577322
21
2.5
21
90
3
77
52
0
0
47
1.00
25577271--25577322
20
2.5
20
85
11
70
53
0
0
46
1.00
25577295--25577354
16
3.8
16
78
8
52
58
1
0
40
1.08
25578546--25578589
23
2.0
22
86
13
63
47
0
0
52
1.00
25584216--25584261
21
2.2
21
96
0
83
13
19
8
58
1.60
25587924--25587950
2
13.5
2
100
0
54
48
0
0
51
1.00
25588742--25588799
18
3.3
18
75
20
52
51
1
0
46
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25588772--25588814
16
2.6
17
81
7
52
53
0
2
44
1.13
25589165--25589200
14
2.5
14
90
4
54
66
0
0
33
0.92
25589275--25589317
22
2.0
22
85
0
59
65
9
6
18
1.44
25590595--25590648
25
2.2
26
77
12
60
51
1
3
42
1.30
25599789--25599865
39
2.0
39
89
0
118
24
5
37
32
1.78
25604017--25604047
14
2.2
14
100
0
62
45
6
6
41
1.55
25605694--25605739
17
2.7
17
79
0
56
30
17
23
28
1.97
25605779--25605807
3
9.7
3
100
0
58
68
0
0
31
0.89
25610845--25610908
25
2.6
24
80
11
67
45
0
1
53
1.10
25611666--25611751
27
3.0
28
77
14
79
52
0
1
46
1.08
25611665--25611734
27
2.6
27
78
14
83
54
0
1
44
1.09
25612719--25612751
13
2.6
13
85
4
50
57
0
0
42
0.98
25612716--25612776
23
2.8
21
78
14
61
59
0
0
40
0.98
25612724--25612770
17
2.7
17
80
12
60
61
0
0
38
0.96
25612797--25612837
15
2.7
15
84
0
55
46
0
0
53
1.00
25616071--25616381
153
2.0
153
96
1
570
32
10
13
43
1.78
25618626--25618653
2
14.0
2
100
0
56
0
50
0
50
1.00
25620474--25620512
18
2.2
19
86
9
55
33
0
0
66
0.92
25620482--25620519
18
2.1
18
85
9
51
31
2
0
65
1.06
25621924--25622372
222
2.0
219
85
3
614
43
7
7
42
1.59
25622202--25622256
26
2.1
26
90
6
85
54
1
0
43
1.10
25628354--25628401
22
2.1
23
84
7
62
39
0
0
60
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25628367--25628401
8
4.4
8
85
0
52
42
0
0
57
0.99
25628367--25628421
14
3.7
16
74
16
55
45
0
0
54
0.99
25628363--25628406
14
3.0
14
84
12
61
43
0
0
56
0.99
25628391--25628441
22
2.5
22
90
9
81
49
0
0
50
1.00
25629653--25629697
14
2.9
17
75
21
53
33
2
4
60
1.29
25639588--25639672
30
2.8
29
87
10
118
32
9
3
54
1.50
25662867--25662906
19
2.1
19
85
0
53
30
5
5
60
1.40
25663262--25663308
24
1.9
25
95
4
87
34
17
8
40
1.79
25669095--25669126
8
4.0
8
91
0
55
50
34
0
15
1.45
25686544--25686578
2
17.5
2
93
0
61
45
0
0
54
0.99
25686927--25687004
35
2.2
35
86
2
111
58
3
5
32
1.38
25686960--25687010
27
2.0
26
84
7
68
56
1
5
35
1.35
25687627--25687705
28
2.8
29
84
3
106
35
3
2
58
1.30
25692518--25692656
71
1.9
72
94
2
244
42
9
20
27
1.83
25695724--25695789
30
2.2
30
78
10
73
46
1
7
43
1.41
25696066--25696103
2
19.5
2
89
5
60
50
2
0
47
1.15
25703431--25703464
2
17.0
2
93
0
59
47
0
0
52
1.00
25707711--25707751
20
2.0
21
85
4
57
46
0
4
48
1.23
25707851--25707950
50
2.0
51
96
2
184
41
10
7
42
1.65
25708141--25708208
24
2.9
23
76
6
73
63
1
2
32
1.18
25708216--25708261
20
2.2
22
84
7
60
58
0
0
41
0.98
25708424--25708464
5
8.2
5
86
0
55
0
39
4
56
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25708429--25708463
10
3.5
10
96
0
61
0
34
5
60
1.21
25708411--25708464
15
3.6
15
80
5
56
1
37
5
55
1.34
25708411--25708464
10
5.4
10
82
4
56
1
37
5
55
1.34
25717588--25717628
2
20.5
2
94
0
73
51
0
2
46
1.14
25720192--25720233
11
3.8
11
84
9
59
35
0
0
64
0.94
25720191--25720250
24
2.6
23
86
5
77
33
0
3
63
1.11
25725745--25725782
18
2.1
18
90
0
58
57
13
0
28
1.36
25726594--25727132
295
1.8
296
88
2
834
47
6
7
39
1.56
25734440--25734474
2
17.0
2
94
5
61
48
0
2
48
1.16
25739808--25739832
6
4.2
6
100
0
50
16
0
32
52
1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147