genome.fa.s445.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  9  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1836438--1836480	22	2.0	22	90	0	68	34	0	2	62	1.08
1840168--1840485	176	1.8	176	94	0	564	29	12	23	34	1.92
1841307--1841346	19	2.1	19	90	0	62	25	2	7	65	1.32
1841713--1841754	21	2.0	21	90	0	66	30	11	33	23	1.91
1842211--1842277	30	2.2	30	84	5	82	41	10	4	43	1.59
1843835--1843901	19	3.7	19	69	23	63	44	0	2	52	1.16
1843941--1843987	13	3.5	13	80	11	58	27	0	2	70	0.99
1843931--1843994	28	2.4	27	87	10	96	28	0	1	70	0.97
1844970--1845024	16	3.4	16	69	20	51	38	0	3	58	1.16
1845422--1845483	30	2.1	30	96	0	115	35	8	32	24	1.85
1855640--1855685	21	2.2	21	84	3	58	28	6	0	65	1.17
1856842--1856912	25	2.8	25	79	14	83	46	15	2	35	1.61
1859096--1859159	16	3.9	16	76	13	60	42	7	10	39	1.69
1866806--1866849	19	2.3	19	92	0	70	25	2	6	65	1.28
1869421--1869478	21	2.7	21	76	10	55	29	3	1	65	1.19
1870933--1870994	30	2.1	30	96	0	115	35	8	32	24	1.85
1873103--1873142	21	1.9	21	84	0	53	65	2	0	32	1.06
1880820--1880867	11	4.6	10	80	14	53	58	2	0	39	1.10
1883482--1883523	2	21.0	2	90	0	66	0	4	45	50	1.23
1891303--1891347	24	2.0	22	86	8	63	31	4	6	57	1.44
1891883--1891912	3	9.7	3	92	7	51	66	0	33	0	0.92
1893358--1893400	22	2.0	22	90	0	68	51	6	25	16	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1896653--1896691	2	18.5	2	84	10	51	46	2	48	2	1.29
1899783--1899824	19	2.2	19	87	8	59	76	0	0	23	0.79
1899803--1899833	13	2.3	14	94	5	55	74	0	0	25	0.82
1899797--1899834	13	3.0	13	82	17	53	71	0	0	28	0.87
1904458--1904486	14	2.0	15	93	6	51	89	0	10	0	0.48
1906915--1906986	34	2.1	34	97	2	137	36	11	16	36	1.84
1913308--1913360	13	4.4	12	77	15	56	77	0	13	9	0.99
1913593--1913636	7	5.9	7	92	7	61	59	0	0	40	0.98
1920550--1920990	217	2.0	219	92	3	726	37	7	21	33	1.81
1928531--1928578	18	2.7	18	83	0	60	52	0	33	14	1.42
1931670--1931711	22	1.9	22	85	0	57	21	4	7	66	1.35
1932575--1932616	17	2.3	19	88	8	61	57	4	2	35	1.33
1936849--1936973	40	3.2	40	72	5	101	33	18	11	36	1.86
1936722--1936942	121	1.8	120	83	0	289	32	18	12	36	1.88
1937426--1937476	22	2.3	23	77	16	54	37	19	5	37	1.76
1937442--1937505	22	2.9	22	78	0	65	35	25	4	34	1.77
1937478--1937613	22	6.2	22	75	3	94	36	22	11	30	1.89
1937488--1937631	66	2.2	66	83	2	173	37	18	11	31	1.87
1937575--1937637	22	2.9	22	85	4	74	36	17	11	34	1.85
1937784--1937891	33	3.3	33	74	7	85	34	14	17	33	1.91
1937893--1938000	49	2.2	49	88	8	159	33	12	14	39	1.83
1938299--1938404	34	3.1	35	79	4	108	27	9	18	44	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1939447--1939503	6	9.5	6	80	14	55	66	0	31	1	1.02
1945192--1945219	2	14.0	2	100	0	56	50	0	0	50	1.00
1949616--1949702	44	2.1	42	89	8	133	26	16	19	37	1.92
1950403--1950445	20	2.1	21	86	4	61	25	0	20	53	1.46
1950407--1950452	20	2.3	20	80	0	56	26	0	21	52	1.47
1950792--1950976	75	2.5	74	88	3	275	40	16	14	28	1.88
1963383--1963414	13	2.6	12	90	9	55	40	0	9	50	1.35
1963617--1963705	46	1.9	47	82	11	112	43	5	8	41	1.59
1967085--1967111	13	2.1	13	100	0	54	22	22	25	29	1.99
1969270--1969298	2	14.5	2	100	0	58	48	0	0	51	1.00
1978222--1978283	23	2.7	23	74	20	65	38	0	1	59	1.07
1978255--1978308	28	1.9	28	85	7	74	31	0	1	66	1.02
1978234--1978316	28	3.1	28	78	11	70	36	0	2	61	1.09
1983861--1983906	19	2.4	20	82	17	62	60	2	0	36	1.09
1984226--1984250	7	3.6	7	100	0	50	56	0	0	44	0.99
1984613--1984647	14	2.5	14	90	0	52	62	5	0	31	1.18
1985044--1985590	15	34.3	15	67	22	203	42	2	1	53	1.23
1985148--1985214	28	2.4	28	82	5	82	41	1	1	55	1.18
1985107--1985456	61	5.7	61	72	17	242	40	2	2	54	1.27
1985384--1985527	41	3.5	40	77	12	152	43	0	1	54	1.14
1985409--1985609	35	5.9	34	69	16	116	42	0	1	54	1.18
1985323--1985590	53	5.2	52	76	12	218	43	1	1	54	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1985318--1985540	76	2.9	76	76	18	230	43	0	1	54	1.14
1985446--1985589	18	6.8	21	71	20	88	43	1	1	53	1.18
1985506--1985610	12	8.2	13	73	16	78	41	0	1	55	1.17
1985793--1985822	14	2.1	14	93	0	51	33	3	10	53	1.51
1986154--1986490	11	29.7	11	68	20	105	41	1	2	54	1.23
1986201--1986492	18	16.2	19	64	22	73	40	1	3	54	1.24
1986150--1986497	13	27.1	13	67	22	134	41	1	2	54	1.23
1986369--1986479	47	2.4	48	75	4	109	41	0	2	54	1.20
1986608--1986649	22	1.9	22	85	0	57	26	14	11	47	1.78
1987358--1987411	18	3.3	15	78	19	54	40	1	0	57	1.09
1990341--1990511	92	1.8	92	86	1	243	43	6	4	45	1.50
1991177--1991202	10	2.6	10	100	0	52	46	0	0	53	1.00
1991767--1991805	16	2.4	16	86	0	51	30	5	0	64	1.15
1997780--1997809	13	2.3	13	100	0	60	66	0	13	20	1.24
2000710--2000734	13	1.9	13	100	0	50	16	0	0	84	0.63
2001408--2001454	24	2.0	24	87	4	69	51	6	17	25	1.69
2012734--2012780	19	2.5	20	72	10	53	70	2	12	14	1.26
2012725--2012780	29	2.0	28	82	3	67	71	1	12	14	1.23
2013622--2013683	25	2.4	27	86	5	83	29	4	6	59	1.43
2016718--2016767	26	1.9	26	84	8	66	32	2	2	64	1.16
2017400--2017446	24	2.0	24	87	4	69	51	6	17	25	1.69
2031461--2031539	41	1.9	40	82	14	99	27	3	0	68	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2032519--2032563	19	2.4	18	82	10	54	31	2	2	64	1.18
2032872--2032904	17	1.9	17	100	0	66	39	12	12	36	1.80
2033503--2033541	3	13.0	3	94	0	69	33	0	2	64	1.08
2033661--2033749	45	2.0	45	81	0	106	33	19	13	33	1.90
2033979--2034076	40	2.4	40	81	1	115	39	4	17	38	1.69
2034389--2034434	14	3.2	14	82	17	51	17	2	2	78	0.96
2034374--2034454	20	3.8	21	74	19	62	18	4	1	75	1.05
2034381--2034454	29	2.6	28	75	21	73	20	4	1	74	1.06
2035537--2035582	22	2.1	22	84	8	58	13	6	43	36	1.69
2041545--2041597	16	3.7	15	69	25	51	39	5	1	52	1.36
2043995--2044030	3	11.7	3	94	5	63	36	0	0	63	0.94
2046733--2046765	2	17.0	2	93	6	59	51	0	0	48	1.00
2046857--2046912	29	2.0	28	93	6	96	57	7	1	33	1.37
2055731--2055763	13	2.3	15	90	10	52	51	12	0	36	1.39
2058824--2058856	13	2.3	15	90	10	52	51	12	0	36	1.39
2059514--2059571	4	14.5	4	96	0	62	39	0	10	50	1.37
2061357--2061390	16	2.2	15	89	5	50	52	0	0	47	1.00
2075234--2075264	15	2.1	15	93	0	53	54	0	0	45	0.99
2076157--2076217	25	2.5	24	78	5	59	44	3	0	52	1.17
2076399--2076456	26	2.3	25	85	8	73	43	3	3	50	1.36
2081306--2081363	26	2.2	25	79	8	62	46	10	1	41	1.48
2081700--2081725	3	8.7	3	100	0	52	0	30	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2085328--2085384	28	2.0	28	89	0	87	38	12	12	36	1.80
2087113--2087169	27	2.1	27	86	0	78	54	1	8	35	1.42
2093536--2093578	21	2.0	21	82	8	52	65	4	4	25	1.32
2097612--2097661	18	2.7	19	75	9	59	34	0	0	66	0.92
2097625--2097655	6	5.2	6	100	0	62	32	0	0	67	0.91
2097838--2097880	21	2.0	21	100	0	86	23	18	9	48	1.76
2100951--2100997	24	2.0	24	100	0	94	34	8	12	44	1.73
2110245--2111185	333	2.8	335	85	2	1202	36	14	11	37	1.83
2115171--2115239	36	1.9	35	88	2	102	37	18	13	30	1.89
2118176--2118209	2	17.5	2	93	6	61	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147