Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  16  of  147  ( 17591 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3458008--3458136
30
4.4
28
75
18
86
20
6
2
69
1.23
3464804--3464852
2
26.0
2
80
12
50
48
0
2
48
1.12
3466106--3466134
15
1.9
15
100
0
58
72
0
0
27
0.85
3468333--3468376
11
3.7
11
77
16
52
43
4
0
52
1.22
3473651--3473710
29
2.1
29
84
6
77
40
11
6
41
1.68
3483327--3483374
14
3.4
14
80
5
51
79
2
8
10
1.02
3484023--3484213
100
1.9
99
85
11
266
40
6
9
42
1.63
3493858--3493891
18
1.9
17
88
5
50
52
0
0
47
1.00
3499188--3499222
9
3.9
9
100
0
70
45
31
22
0
1.53
3499879--3499922
19
2.3
19
92
0
70
27
38
22
11
1.88
3507076--3507482
219
1.9
220
86
2
584
37
15
10
36
1.82
3512571--3512611
20
2.0
21
82
17
52
43
9
14
31
1.78
3514924--3514955
15
2.2
15
94
5
57
25
28
0
46
1.53
3515049--3515120
35
2.1
35
100
0
144
38
8
8
44
1.65
3519195--3519238
15
2.8
16
79
3
54
68
15
0
15
1.22
3520333--3520365
17
1.9
17
88
11
50
42
0
3
54
1.15
3528239--3528338
48
2.1
48
86
3
139
29
16
17
38
1.91
3528852--3528884
16
2.1
16
94
5
59
30
6
0
63
1.18
3529598--3529679
41
2.0
41
81
13
98
50
1
0
48
1.08
3529784--3529818
16
2.2
16
90
5
54
34
2
0
62
1.10
3530014--3530166
75
2.0
76
96
1
281
39
7
8
44
1.62
3530863--3530897
10
3.4
10
88
4
52
31
2
11
54
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3536564--3536611
2
24.0
2
82
0
60
47
6
0
45
1.27
3542012--3542055
22
2.0
22
100
0
88
50
13
4
31
1.62
3543095--3543137
22
2.0
21
90
9
68
46
0
9
44
1.35
3548547--3548743
87
2.2
88
85
1
261
42
8
5
43
1.57
3548583--3548765
87
2.1
87
88
1
267
43
7
4
44
1.52
3548719--3548765
20
2.5
19
75
6
51
40
6
6
46
1.55
3553175--3553388
113
1.9
116
86
2
308
26
15
18
38
1.91
3554963--3555009
21
2.2
21
88
0
67
51
2
2
44
1.25
3554959--3555012
21
2.7
20
80
8
65
53
1
1
42
1.22
3564149--3564217
15
4.6
15
75
20
56
15
1
4
78
0.98
3564163--3564217
17
3.6
16
79
13
62
18
1
3
76
1.02
3566543--3566603
29
2.0
30
81
6
70
54
9
8
27
1.62
3567018--3567043
9
2.9
9
100
0
52
46
7
11
34
1.69
3571573--3571619
16
2.8
17
80
6
60
46
0
0
53
1.00
3571538--3571626
17
5.4
17
73
11
51
41
0
0
58
0.98
3571570--3571667
50
2.0
49
80
6
108
50
0
1
48
1.07
3575872--3575918
6
7.8
6
90
0
76
48
2
2
46
1.25
3578759--3578820
22
3.0
20
78
19
58
12
8
3
75
1.14
3578738--3578837
30
3.4
28
77
9
85
17
7
2
74
1.14
3580135--3580186
4
13.0
4
76
8
52
21
1
7
69
1.24
3580135--3580177
16
2.7
16
88
0
59
20
0
9
69
1.15
3580195--3580233
21
1.9
21
89
5
62
56
7
5
30
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3581736--3581782
22
2.1
23
88
4
69
34
21
6
38
1.79
3585623--3585690
29
2.3
29
82
10
93
80
0
10
8
0.89
3585626--3585696
25
2.8
26
82
2
81
78
0
12
8
0.95
3588984--3589046
4
16.2
4
73
18
53
22
1
4
71
1.13
3590344--3590392
2
24.5
2
91
0
80
0
2
46
51
1.12
3591396--3591460
27
2.4
28
80
12
73
69
0
26
4
1.08
3591531--3591564
14
2.4
14
90
0
50
41
0
0
58
0.98
3591614--3591671
28
2.0
30
83
6
75
43
1
1
53
1.21
3596374--3596427
27
2.0
27
100
0
108
37
11
14
37
1.82
3598398--3598470
35
2.1
35
89
0
110
34
12
19
34
1.89
3600400--3600458
16
3.6
17
75
8
61
44
0
0
55
0.99
3600390--3600465
17
4.7
17
71
11
52
42
0
0
57
0.98
3600551--3600589
2
19.5
2
94
0
69
48
2
0
48
1.15
3606903--3606939
18
2.0
19
89
5
58
40
2
0
56
1.13
3606918--3606973
25
2.3
24
87
3
76
39
0
1
58
1.08
3606916--3606981
14
4.9
14
78
10
75
42
0
1
56
1.08
3607408--3607448
20
2.0
20
85
0
55
26
0
12
60
1.31
3607929--3607956
3
9.3
3
100
0
56
32
0
0
67
0.91
3608020--3608053
5
6.8
5
93
0
59
58
0
2
38
1.13
3609031--3609061
2
16.0
2
93
6
55
51
0
0
48
1.00
3609102--3609130
14
2.0
15
93
6
51
31
6
0
62
1.22
3609267--3609306
13
3.1
13
88
0
53
50
0
2
47
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3613160--3613202
19
2.3
19
84
4
61
69
2
0
27
1.00
3614900--3614962
31
2.0
31
93
0
108
41
6
14
38
1.71
3623805--3623863
27
2.1
28
84
3
75
25
1
3
69
1.13
3626387--3626412
2
13.0
2
100
0
52
50
0
0
50
1.00
3635514--3635682
68
2.5
68
86
1
216
30
12
14
42
1.83
3637989--3638028
9
4.9
9
82
17
52
22
0
0
77
0.77
3637996--3638025
14
2.1
14
100
0
60
20
0
0
80
0.72
3638484--3638908
120
3.6
118
81
5
454
35
8
4
50
1.55
3638907--3638941
16
2.1
17
94
5
63
20
5
0
74
1.02
3640884--3640916
15
2.1
16
88
5
50
27
0
18
54
1.44
3640955--3640991
15
2.5
15
86
0
56
21
5
35
37
1.77
3641345--3641371
4
6.8
4
100
0
54
48
0
0
51
1.00
3641374--3641420
16
2.9
16
81
12
60
38
0
2
59
1.09
3641408--3641460
21
2.6
21
88
11
83
50
0
0
49
1.00
3641408--3641459
22
2.5
22
93
6
90
51
0
0
48
1.00
3643515--3643552
18
2.1
19
90
9
62
10
0
5
84
0.77
3648892--3648944
22
2.4
22
93
6
90
49
0
0
50
1.00
3651729--3651784
29
2.0
28
82
10
69
67
7
5
19
1.34
3651720--3651790
37
1.9
36
83
8
90
67
5
5
21
1.32
3652660--3652701
19
2.2
19
86
0
57
23
0
11
64
1.27
3656143--3656217
34
2.2
34
95
0
132
57
1
26
14
1.46
3662097--3662132
18
2.0
18
88
0
54
5
22
2
69
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3662090--3662140
22
2.3
22
80
6
59
3
21
1
72
1.11
3664807--3664844
16
2.5
15
84
12
51
84
0
13
2
0.73
3671671--3671695
13
1.9
13
100
0
50
28
0
0
72
0.86
3672323--3672377
16
3.4
16
74
2
56
29
3
12
54
1.55
3672316--3672377
32
1.9
33
90
3
99
32
3
11
53
1.53
3672346--3672436
20
4.7
20
70
10
73
31
5
8
53
1.55
3672446--3672632
41
4.6
41
85
4
245
27
6
11
53
1.63
3672448--3672632
80
2.3
81
85
3
257
27
7
11
53
1.63
3673716--3673755
20
2.0
21
85
5
55
5
5
12
77
1.09
3680009--3680062
18
2.9
18
76
17
58
33
0
9
57
1.31
3682657--3682704
24
2.0
24
92
4
80
27
18
10
43
1.82
3686387--3686434
18
2.6
17
77
9
51
52
2
0
45
1.12
3686959--3686999
20
2.0
20
85
0
55
58
0
0
41
0.98
3688677--3688704
14
2.0
14
100
0
56
57
0
28
14
1.38
3688641--3688740
50
2.0
50
100
0
200
54
8
22
16
1.68
3694061--3694139
39
2.0
39
92
0
131
35
39
2
22
1.68
3707386--3707420
6
5.8
6
96
0
52
51
0
8
40
1.33
3707382--3707420
12
3.2
12
88
0
51
53
0
7
38
1.30
3707376--3707420
18
2.5
18
85
0
54
53
2
6
37
1.40
3715528--3715583
25
2.2
25
84
6
69
50
5
10
33
1.60
3719855--3719950
21
4.3
21
76
8
75
48
4
3
43
1.37
3719930--3719974
15
2.9
15
83
3
54
55
4
2
37
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3721734--3721763
6
5.2
6
96
4
53
13
16
0
70
1.18
3727327--3727406
39
2.1
39
95
0
142
36
13
10
40
1.79
3734188--3734310
43
2.8
44
93
2
212
51
13
5
30
1.63
3735664--3735705
21
2.0
22
85
4
59
42
7
2
47
1.43
3735826--3735867
16
2.6
16
85
11
50
21
4
4
69
1.26
3737499--3737603
42
2.4
43
77
16
110
49
1
0
48
1.12
3737545--3737603
24
2.6
22
77
17
68
54
0
0
45
0.99
3740448--3740472
12
2.1
12
100
0
50
48
36
16
0
1.46
3744528--3744553
4
6.5
4
100
0
52
76
0
0
23
0.78
3745210--3745259
24
2.1
24
88
7
75
56
2
14
28
1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147