Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  79  of  147  ( 17591 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14562592--14562632
21
1.9
21
85
14
57
14
2
9
73
1.19
14564754--14564789
13
2.6
13
91
8
54
77
5
0
16
0.94
14565410--14565497
23
3.7
23
76
8
97
59
12
3
25
1.49
14565398--14565463
13
5.4
12
75
21
57
62
9
1
27
1.34
14565340--14565500
48
3.3
48
80
10
150
59
11
3
25
1.47
14566701--14566753
20
2.7
19
78
18
63
47
1
1
49
1.23
14566722--14566776
26
2.1
26
83
12
69
54
1
1
41
1.21
14567916--14568051
70
1.9
71
88
2
204
50
2
8
38
1.47
14572333--14572365
17
1.9
17
100
0
66
18
12
21
48
1.80
14583186--14583263
21
3.7
21
83
6
88
33
6
3
56
1.43
14584382--14584406
13
1.9
13
100
0
50
60
0
8
32
1.26
14584677--14584712
19
1.9
19
94
5
65
55
16
5
22
1.62
14589222--14589247
11
2.4
11
100
0
52
7
7
0
84
0.77
14590147--14590190
21
2.2
20
87
4
61
0
2
13
84
0.73
14590573--14590641
15
4.3
15
70
22
50
39
0
2
57
1.13
14599209--14599295
21
4.2
20
70
21
63
35
4
10
49
1.58
14599685--14599853
22
7.7
22
74
5
117
39
5
6
47
1.54
14599687--14599874
44
4.2
44
74
6
146
40
6
6
46
1.55
14599905--14599960
22
2.5
22
79
0
67
35
10
10
42
1.74
14600531--14600853
22
14.6
22
73
13
157
37
9
4
48
1.55
14600597--14600724
46
2.8
47
80
9
129
39
7
4
47
1.53
14600661--14600788
65
1.9
67
83
9
165
35
8
5
50
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14600689--14600871
87
2.1
87
81
2
206
38
9
4
47
1.57
14600736--14600896
87
1.9
87
80
2
189
40
11
4
42
1.61
14601354--14601463
41
2.6
42
82
8
125
40
9
2
48
1.49
14601399--14601467
19
3.5
19
73
11
66
43
8
1
46
1.43
14601393--14601572
22
8.4
22
72
9
97
40
7
1
50
1.41
14601424--14601476
11
4.8
11
76
4
54
47
5
0
47
1.26
14601537--14601585
22
2.2
22
88
0
71
42
14
2
40
1.57
14601592--14601659
22
3.1
21
76
14
66
36
4
4
54
1.41
14601612--14601762
65
2.3
65
78
8
155
33
7
4
53
1.51
14601819--14601877
28
2.1
29
81
9
68
37
5
3
54
1.39
14602426--14602469
17
2.6
16
82
10
61
54
0
0
45
0.99
14602416--14602466
17
3.1
16
81
13
59
47
0
1
50
1.12
14611653--14611764
58
1.9
58
83
3
145
20
17
23
38
1.93
14618136--14618178
21
2.0
21
82
8
52
65
0
2
32
1.06
14619799--14619915
45
2.7
43
80
6
128
43
11
9
35
1.74
14619958--14620055
33
2.9
33
78
1
115
46
12
18
22
1.82
14619967--14620070
33
3.2
32
79
8
102
47
9
20
23
1.79
14620189--14620280
44
2.1
45
87
2
132
32
15
16
35
1.90
14620203--14620306
44
2.4
44
81
3
120
34
11
15
38
1.83
14624573--14624781
104
2.0
104
94
0
364
41
11
7
39
1.70
14625261--14625295
18
1.9
18
88
11
54
65
0
0
34
0.93
14628630--14628659
2
15.0
2
100
0
60
0
50
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14630117--14630211
46
2.1
46
87
0
136
31
4
16
47
1.66
14630206--14630238
16
2.1
16
88
11
50
6
15
0
78
0.93
14632458--14632519
31
2.0
31
87
6
90
22
4
33
38
1.76
14632483--14632534
18
2.8
18
74
5
50
15
1
36
46
1.57
14632716--14632782
35
1.9
35
88
8
102
14
2
37
44
1.61
14633767--14633805
14
2.7
15
84
4
53
5
15
0
79
0.90
14648175--14648208
15
2.3
15
90
10
52
61
0
0
38
0.96
14648240--14648274
17
1.9
19
88
11
56
65
0
0
34
0.93
14648373--14648438
20
3.2
20
77
12
55
33
4
6
56
1.44
14648391--14648438
10
4.7
10
77
12
53
33
4
4
58
1.36
14649233--14649257
13
1.9
13
100
0
50
36
16
32
16
1.90
14653602--14653677
13
6.4
11
76
16
64
65
9
2
22
1.34
14653601--14653677
14
6.2
13
78
14
67
66
9
2
22
1.33
14653637--14653766
24
5.3
24
81
4
118
57
11
6
24
1.56
14653602--14653766
13
13.7
12
68
22
53
58
11
4
24
1.52
14653846--14653906
25
2.4
25
75
2
59
68
4
1
24
1.18
14658520--14658552
5
6.6
5
89
10
50
78
0
3
18
0.87
14658817--14658931
39
3.0
38
79
9
103
46
10
9
33
1.70
14659010--14659104
18
5.3
18
75
7
86
46
10
18
24
1.81
14659108--14659164
18
3.2
18
76
0
60
56
12
5
26
1.57
14659116--14659188
18
3.9
18
78
3
65
50
8
8
32
1.62
14659220--14659327
20
5.5
20
68
16
75
45
14
8
31
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14659233--14659284
17
2.9
17
83
11
52
44
11
7
36
1.70
14659214--14659284
37
1.9
36
88
2
106
46
11
8
33
1.70
14659390--14659578
100
1.9
99
86
3
238
39
17
8
33
1.81
14660834--14660867
14
2.3
15
85
5
52
8
17
0
73
1.08
14661132--14661199
20
3.5
19
81
16
70
4
8
2
83
0.87
14661145--14661204
21
3.0
20
83
7
68
5
5
3
86
0.77
14661166--14661215
22
2.2
24
82
7
59
2
6
6
86
0.79
14661146--14661207
1
62.0
1
77
0
61
3
4
3
88
0.68
14661580--14661625
22
2.1
22
95
0
83
41
19
8
30
1.82
14663364--14663415
19
2.7
19
93
3
86
44
13
23
19
1.86
14664234--14664283
13
3.8
13
86
0
64
10
8
8
74
1.24
14666410--14666441
11
2.6
13
90
9
50
75
6
3
15
1.14
14667057--14667131
12
6.2
12
73
23
68
61
10
2
25
1.42
14667058--14667147
35
2.5
35
82
10
112
58
11
3
26
1.47
14667052--14667130
25
3.2
25
73
23
69
60
10
2
26
1.41
14667093--14667147
24
2.3
25
87
9
87
58
12
3
25
1.51
14667093--14667144
23
2.2
24
89
3
79
59
13
3
23
1.50
14668252--14668325
38
1.9
38
81
10
89
43
1
8
47
1.41
14669479--14669615
71
1.9
72
86
2
197
50
3
8
37
1.50
14670480--14670504
1
25.0
1
100
0
50
100
0
0
0
0.00
14673931--14673963
17
1.9
17
100
0
66
18
12
21
48
1.80
14681353--14681423
34
2.1
34
82
10
83
59
8
4
28
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14684796--14684862
30
2.3
28
92
5
107
34
7
2
55
1.43
14684765--14684863
21
4.9
21
69
15
57
33
7
3
56
1.42
14685991--14686017
14
1.9
14
100
0
54
62
0
7
29
1.22
14686290--14686325
19
1.9
19
94
5
65
55
16
5
22
1.62
14686694--14686757
30
2.1
30
82
0
74
35
10
29
23
1.89
14690864--14690889
11
2.4
11
100
0
52
7
7
0
84
0.77
14693716--14693772
3
19.3
3
96
3
107
35
0
0
64
0.93
14694367--14694399
2
16.5
2
100
0
66
48
0
0
51
1.00
14695692--14695726
16
2.2
16
89
0
52
42
0
0
57
0.99
14696496--14696541
20
2.3
20
92
0
74
39
4
13
43
1.63
14696504--14696543
20
2.0
20
100
0
80
40
5
15
40
1.68
14698633--14698793
86
1.9
86
89
2
252
29
14
15
40
1.87
14702057--14702082
11
2.4
11
100
0
52
26
7
23
42
1.81
14711576--14711618
3
14.3
3
100
0
86
67
0
0
32
0.91
14712874--14712904
14
2.2
14
94
0
53
54
3
0
41
1.16
14714025--14714068
22
2.0
22
95
0
79
38
0
4
56
1.20
14714035--14714086
22
2.3
22
83
3
59
40
0
3
55
1.18
14714120--14714165
24
1.9
24
86
0
65
50
0
4
45
1.21
14715807--14715885
41
1.9
41
89
5
124
29
16
10
44
1.80
14717247--14717281
14
2.5
14
100
0
70
40
17
31
11
1.85
14722308--14722359
6
8.3
6
82
16
52
21
1
0
76
0.87
14722331--14722379
19
2.6
20
84
9
59
10
6
4
79
1.03
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14722811--14722853
19
2.3
19
87
0
59
25
0
23
51
1.49
14724210--14724250
19
2.2
19
86
4
57
12
2
4
80
0.97
14724208--14724289
28
2.9
27
79
15
78
13
3
4
78
1.06
14724209--14724294
20
4.4
19
75
17
70
12
2
4
80
0.97
14735286--14735414
63
2.0
63
85
2
170
17
19
12
50
1.77
14735332--14735428
32
3.1
32
71
12
92
18
20
12
48
1.80
14735350--14735603
108
2.3
107
83
9
318
17
24
14
42
1.87
14735890--14735920
14
2.3
14
94
5
55
22
0
0
77
0.77
14736755--14736799
18
2.5
18
85
0
54
11
6
4
77
1.09
14741808--14741841
16
2.1
17
88
5
52
50
2
0
47
1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147