genome.fa.s445.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  82  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15130557--15131943	690	2.0	698	87	4	1981	36	13	12	37	1.83
15135852--15135927	29	2.6	29	81	10	84	53	2	7	35	1.44
15136073--15136122	21	2.3	22	80	12	59	40	6	6	48	1.52
15137501--15137618	44	2.7	43	75	10	116	47	6	11	34	1.65
15137489--15137645	22	7.2	22	70	7	95	47	6	9	36	1.62
15137713--15137775	22	2.9	22	85	0	81	47	9	6	36	1.62
15137715--15137799	44	1.9	44	83	4	109	47	9	7	36	1.63
15137913--15137990	39	2.0	38	80	9	86	42	3	14	39	1.63
15137933--15138076	22	6.9	22	67	16	74	45	5	10	38	1.62
15137932--15137995	17	3.3	19	72	16	60	42	3	12	42	1.58
15137969--15138008	19	2.1	19	85	0	53	45	5	10	40	1.60
15138144--15138267	66	1.9	66	82	0	158	49	6	6	37	1.54
15138210--15138282	22	3.3	22	79	7	76	46	6	8	38	1.60
15138555--15138695	22	6.4	22	76	4	115	51	4	6	37	1.49
15138555--15138675	11	11.1	11	67	4	66	52	4	4	38	1.45
15138678--15138717	18	2.2	18	86	8	55	50	5	10	35	1.58
15139009--15139115	22	4.9	22	75	10	94	49	8	4	37	1.54
15139009--15139226	44	5.0	43	76	10	149	47	6	7	38	1.58
15139071--15139231	66	2.4	66	79	2	162	45	6	8	39	1.60
15139070--15139228	22	7.2	22	77	0	138	45	6	8	39	1.59
15141302--15141356	20	2.7	21	78	13	62	29	1	0	69	0.99
15148816--15148930	22	5.2	22	76	0	86	33	9	8	48	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15149002--15149340	178	1.9	179	91	1	565	35	10	6	47	1.63
15149306--15149852	207	2.6	207	82	4	634	24	11	9	55	1.65
15152217--15152374	58	2.8	57	82	3	201	36	15	6	41	1.74
15152404--15152430	5	5.4	5	100	0	54	81	0	0	18	0.69
15152864--15152918	21	2.7	21	78	13	62	38	16	18	27	1.92
15153228--15153252	13	1.9	13	100	0	50	64	4	0	32	1.12
15153212--15153334	48	2.7	43	83	14	140	59	1	4	34	1.26
15153838--15153869	3	11.0	3	93	6	57	68	0	0	31	0.90
15159746--15159825	37	2.1	38	88	6	119	55	8	25	11	1.64
15160629--15160969	59	5.7	58	80	11	363	45	6	13	34	1.70
15160629--15160971	119	2.9	118	84	8	428	44	6	13	34	1.71
15160855--15160883	15	1.9	15	100	0	58	58	0	0	41	0.98
15161002--15161028	6	4.5	6	100	0	54	14	0	0	85	0.61
15162085--15162136	21	2.5	21	100	0	104	36	15	11	36	1.84
15164216--15164255	21	1.9	21	89	0	62	85	0	15	0	0.61
15164218--15164255	10	3.6	10	92	7	58	86	0	13	0	0.56
15164220--15164273	20	2.8	19	78	8	56	81	0	14	3	0.82
15166087--15166543	41	11.1	41	83	11	571	23	17	22	36	1.95
15166087--15166543	84	5.6	82	83	11	526	23	17	22	36	1.95
15166243--15166299	29	2.0	29	100	0	114	21	17	17	43	1.88
15166272--15166543	42	6.4	42	83	9	354	23	18	22	35	1.96
15166326--15166504	91	2.0	89	91	2	286	25	18	22	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15166550--15166595	13	3.5	13	82	5	65	89	6	0	4	0.60
15166552--15166595	22	2.0	23	90	4	72	88	6	0	4	0.62
15166678--15166725	12	3.9	12	78	10	53	87	8	2	2	0.70
15166484--15166829	129	2.8	123	84	10	379	45	12	15	27	1.81
15166677--15166726	16	2.9	16	80	13	55	88	8	2	2	0.68
15166550--15166849	129	2.3	131	87	6	421	51	11	13	24	1.73
15168154--15168233	37	2.1	38	90	2	126	53	8	26	11	1.65
15169038--15169546	59	8.7	58	79	7	512	44	7	13	34	1.72
15169038--15169548	116	4.4	117	88	4	710	43	7	13	34	1.73
15169425--15169463	15	2.4	17	83	12	55	48	5	0	46	1.24
15169578--15169606	12	2.4	12	100	0	58	13	6	0	79	0.93
15171224--15171746	58	9.0	58	82	5	569	43	7	13	35	1.74
15171454--15171486	14	2.3	15	89	5	50	54	0	3	42	1.15
15171223--15171744	117	4.5	116	82	5	581	43	7	13	35	1.73
15171233--15171744	175	2.9	173	89	2	774	42	8	13	35	1.74
15172209--15173578	632	2.2	631	98	0	2623	33	11	17	37	1.87
15179934--15179977	4	11.0	4	80	0	52	54	20	2	22	1.56
15179934--15179975	16	2.6	16	92	0	66	54	19	2	23	1.55
15180649--15180901	67	3.8	66	79	6	255	56	6	10	26	1.56
15180649--15180916	65	4.1	65	78	12	228	56	7	10	25	1.59
15182472--15182525	22	2.5	22	84	0	63	29	11	3	55	1.52
15182800--15182869	22	3.2	22	81	0	77	35	10	5	48	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15183148--15183355	22	9.5	22	73	8	129	36	8	9	45	1.67
15183154--15183355	66	3.1	66	74	7	169	36	8	9	46	1.67
15183151--15183376	44	5.2	44	73	9	142	36	7	10	46	1.66
15183475--15183543	21	3.4	20	70	25	56	37	11	1	49	1.48
15183691--15183760	22	3.2	22	77	4	79	35	12	2	48	1.56
15183779--15183819	22	1.9	22	85	5	57	46	21	2	29	1.64
15184018--15184053	11	3.3	11	84	0	54	36	5	2	55	1.38
15183992--15184148	22	7.3	22	73	9	110	35	9	7	47	1.65
15183992--15184138	44	3.4	43	79	7	129	36	9	7	46	1.65
15184025--15184171	63	2.3	65	83	5	174	36	8	6	48	1.60
15188319--15188422	28	3.8	28	87	3	140	24	0	29	46	1.53
15193765--15193794	15	1.9	15	93	6	51	6	30	6	56	1.51
15197055--15197105	5	10.6	5	89	8	79	43	1	0	54	1.11
15197476--15197718	115	2.1	115	78	10	264	37	13	27	22	1.91
15198142--15198390	115	2.2	114	80	4	268	34	12	28	24	1.92
15208841--15208930	47	1.9	46	86	6	128	64	5	10	20	1.44
15209910--15209959	18	2.9	18	83	16	63	80	4	4	12	1.00
15210820--15210863	3	14.7	3	90	0	61	63	0	6	29	1.20
15210902--15210940	13	2.8	13	88	7	51	46	2	0	51	1.14
15213590--15213627	12	3.3	12	89	7	53	73	5	0	21	1.02
15214643--15214678	18	2.0	19	89	10	58	52	2	0	44	1.15
15215589--15215619	15	2.1	14	94	5	53	77	0	0	22	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15219635--15219664	15	1.9	16	93	6	53	33	0	13	53	1.40
15220635--15220730	46	2.1	46	84	3	122	71	10	1	16	1.18
15222614--15222654	16	2.6	16	88	7	57	41	0	14	43	1.45
15224459--15224489	15	2.1	15	93	0	53	38	0	25	35	1.56
15232912--15232951	20	2.0	21	85	5	55	5	10	2	82	0.91
15233024--15233087	18	3.5	19	77	10	53	71	1	3	23	1.08
15233065--15233107	13	3.2	13	83	3	50	81	2	6	9	0.95
15233060--15233107	19	2.6	18	83	12	53	81	2	6	10	0.95
15233482--15233529	21	2.2	21	85	3	60	62	12	2	22	1.40
15233482--15233532	20	2.5	20	83	6	57	58	13	1	25	1.46
15233957--15234010	3	18.0	3	100	0	108	66	0	0	33	0.92
15234507--15234652	69	2.1	69	83	3	177	30	25	15	28	1.96
15248797--15248839	19	2.3	19	88	8	61	58	0	2	39	1.11
15249682--15249749	32	2.1	32	83	0	82	54	1	1	42	1.18
15250993--15251018	3	8.7	3	100	0	52	30	0	0	69	0.89
15254720--15254759	21	1.9	21	84	0	53	62	12	5	20	1.48
15255770--15256167	146	2.7	145	84	1	494	40	10	16	33	1.82
15256463--15256496	13	2.6	13	100	0	68	23	0	26	50	1.50
15256834--15257063	127	1.8	124	85	4	327	33	11	19	35	1.88
15256970--15257392	87	4.9	87	86	2	530	29	13	21	35	1.91
15257670--15257719	18	2.8	18	84	0	55	38	12	24	26	1.90
15257863--15257947	41	2.1	41	90	0	134	34	10	18	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15257828--15257915	26	3.6	26	71	20	89	36	14	17	31	1.90
15257904--15258151	133	1.9	133	84	1	336	30	14	20	33	1.93
15259197--15259238	21	2.1	20	86	8	59	2	16	2	78	0.96
15261021--15261061	21	2.0	21	85	0	55	17	9	12	60	1.57
15264605--15264630	11	2.4	11	100	0	52	57	0	0	42	0.98
15264728--15264780	19	2.9	18	83	5	63	22	7	9	60	1.53
15264750--15264822	28	2.6	28	80	2	74	31	8	8	52	1.61
15266588--15266765	90	2.0	90	91	2	288	45	3	8	42	1.53
15268844--15268892	21	2.4	22	83	13	68	20	34	12	32	1.90
15273310--15273454	71	2.0	71	98	0	281	48	14	15	20	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147