genome.fa.s445.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  85  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15702292--15702447	5	29.4	5	75	13	95	56	3	4	35	1.36
15702295--15702459	3	59.3	3	70	18	90	57	3	4	34	1.36
15702300--15702434	52	2.7	49	81	14	150	55	3	5	35	1.40
15703023--15703126	24	4.4	23	76	12	86	35	11	7	45	1.69
15704585--15704656	19	3.5	19	72	27	58	25	16	16	41	1.89
15708776--15708817	18	2.3	19	84	12	52	47	0	0	52	1.00
15711264--15711306	2	21.5	2	95	0	77	0	46	2	51	1.13
15711496--15711527	16	2.0	16	93	0	55	46	6	21	25	1.74
15715819--15715853	6	5.8	6	86	0	52	0	20	0	80	0.72
15717258--15717316	29	2.0	29	86	0	82	49	5	3	42	1.41
15723811--15723848	17	2.1	18	85	9	51	50	0	0	50	1.00
15724232--15724266	17	2.0	18	88	5	54	74	2	2	20	1.08
15724747--15724812	21	3.2	21	80	8	82	43	16	7	31	1.76
15725531--15725573	13	3.3	13	78	12	52	65	0	0	34	0.93
15725528--15725588	26	2.5	24	82	10	77	59	0	0	40	0.98
15731147--15731178	6	5.7	6	92	7	50	0	15	0	84	0.63
15731145--15731178	11	3.1	11	87	12	52	0	17	0	82	0.67
15731145--15731177	16	2.1	16	100	0	66	0	18	0	81	0.68
15735519--15735582	26	2.5	24	78	11	74	45	1	0	53	1.10
15735519--15735583	27	2.6	25	76	16	71	46	1	0	52	1.10
15736873--15736951	40	2.0	41	82	2	97	39	6	20	34	1.78
15739040--15739150	18	5.8	19	66	19	70	37	2	1	57	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15739087--15739124	17	2.1	18	85	9	51	47	2	0	50	1.15
15739505--15739547	22	2.0	21	86	8	61	76	2	0	20	0.89
15739856--15739905	23	2.2	23	85	7	66	58	0	4	38	1.17
15740046--15740090	21	2.1	21	83	0	54	44	17	8	28	1.79
15741905--15741934	12	2.5	12	88	0	51	73	16	0	10	1.09
15745412--15745446	15	2.4	15	95	4	63	51	25	8	14	1.70
15747621--15747649	12	2.3	13	94	5	51	3	0	48	48	1.18
15747689--15747758	19	3.7	20	81	14	94	10	0	41	48	1.36
15747658--15747758	12	8.1	12	69	18	55	11	0	37	49	1.46
15748052--15748124	36	2.0	36	94	0	128	54	15	10	19	1.69
15750442--15750543	46	2.2	46	77	3	107	33	25	12	28	1.93
15756948--15757140	106	1.8	106	80	6	230	25	21	16	36	1.94
15763459--15763512	3	18.0	3	100	0	108	66	0	0	33	0.92
15763511--15763554	3	14.7	3	100	0	88	34	0	0	65	0.93
15765707--15765745	2	21.5	2	80	19	50	51	0	0	48	1.00
15765702--15765745	8	5.2	9	81	18	51	50	2	0	47	1.13
15765708--15765745	13	2.7	14	84	12	51	50	0	0	50	1.00
15765967--15766002	15	2.5	15	90	4	56	50	0	2	47	1.15
15766206--15766237	15	2.1	15	94	0	55	50	0	0	50	1.00
15766243--15766299	22	2.7	20	71	15	51	38	1	1	57	1.19
15766481--15766588	54	2.0	54	83	3	137	18	9	12	60	1.58
15766944--15767334	125	3.0	128	84	7	472	43	5	3	47	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15768392--15768449	23	2.5	23	77	5	55	37	6	3	51	1.46
15777583--15777624	15	2.6	16	81	7	50	57	4	2	35	1.33
15777730--15777761	11	3.0	11	95	4	57	75	0	0	25	0.81
15778973--15779025	21	2.4	22	84	6	72	18	7	1	71	1.19
15780460--15780492	12	2.8	12	100	0	66	21	0	9	69	1.15
15780490--15780542	21	2.4	22	81	6	63	18	7	3	69	1.28
15780517--15780602	35	2.4	37	82	3	104	19	5	4	69	1.27
15780773--15780822	25	2.1	24	82	14	59	38	2	10	50	1.48
15788582--15788612	9	3.4	9	100	0	62	45	19	9	25	1.81
15791141--15791195	14	3.9	14	80	2	56	3	12	1	81	0.89
15791141--15791189	26	1.9	25	84	12	64	4	12	0	83	0.77
15792369--15792625	56	4.5	56	68	18	179	57	11	3	27	1.52
15792455--15792492	20	1.9	20	88	0	58	52	18	7	21	1.70
15792628--15792688	20	3.0	20	70	13	61	52	6	6	34	1.53
15792799--15792871	20	3.6	20	86	1	83	56	9	4	30	1.50
15792817--15792871	21	2.7	20	88	2	83	56	12	1	29	1.47
15792864--15792946	20	4.6	20	70	20	65	50	9	7	32	1.62
15792859--15792912	16	3.3	16	78	2	63	53	11	5	29	1.59
15792895--15792952	20	3.0	19	75	9	55	51	8	6	32	1.59
15792864--15792961	52	1.9	50	82	12	119	52	10	7	30	1.62
15793778--15794130	43	8.2	43	82	1	395	38	20	13	27	1.90
15793778--15794174	86	4.6	84	78	6	361	38	19	14	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15793778--15794174	43	9.3	42	79	7	306	38	19	14	27	1.91
15794378--15794402	13	1.9	13	100	0	50	40	12	24	24	1.88
15796923--15796965	5	8.2	5	82	14	52	37	2	0	60	1.10
15796908--15796960	27	2.0	27	85	7	72	33	3	1	60	1.26
15796923--15796965	16	2.7	16	86	10	61	37	2	0	60	1.10
15796924--15796965	8	5.2	8	78	21	52	35	2	0	61	1.09
15799230--15799270	18	2.2	20	87	12	61	12	7	4	75	1.16
15802817--15802849	11	3.2	11	91	8	52	87	6	6	0	0.65
15803160--15803215	26	2.2	25	84	9	69	78	3	14	3	1.02
15803168--15803228	26	2.4	25	84	12	81	81	1	9	6	0.92
15804171--15804304	69	2.0	68	86	4	189	26	18	13	41	1.88
15804426--15805365	120	7.9	120	78	5	760	18	22	14	44	1.86
15804426--15805235	239	3.4	234	82	6	817	18	22	14	44	1.86
15804426--15805235	236	3.4	237	80	5	839	18	22	14	44	1.86
15804426--15805358	475	2.0	477	79	5	1035	18	22	14	44	1.86
15805553--15805625	5	14.2	5	79	11	60	41	1	4	53	1.28
15805541--15805610	3	25.3	3	73	16	53	40	2	1	55	1.23
15807938--15807978	18	2.2	20	87	12	61	12	7	4	75	1.16
15813229--15813290	18	3.5	18	76	10	65	51	12	3	32	1.56
15813418--15813465	24	2.0	24	84	8	62	47	14	4	33	1.63
15813527--15813596	20	3.5	20	83	13	90	57	8	4	30	1.48
15813527--15813594	21	3.3	21	82	11	88	57	8	4	29	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15813732--15813867	41	3.3	41	83	4	123	55	11	5	27	1.58
15813743--15813825	21	4.0	21	72	10	71	55	10	4	28	1.55
15813801--15813890	41	2.2	41	97	0	171	56	10	4	28	1.51
15813991--15814028	20	1.9	20	94	0	67	47	10	10	31	1.72
15813984--15814041	20	3.0	19	80	9	64	48	10	8	32	1.68
15816523--15816579	29	2.0	29	89	0	87	56	3	24	15	1.56
15818826--15818866	21	2.0	21	85	4	57	31	0	4	63	1.15
15819004--15819056	21	2.5	22	79	14	58	15	15	0	69	1.19
15821050--15821105	18	3.1	17	78	17	51	57	7	1	33	1.37
15821014--15821105	37	2.5	36	79	13	100	53	9	3	33	1.50
15821409--15821474	33	2.1	33	88	11	102	60	9	3	27	1.42
15821251--15821619	185	2.0	183	83	7	471	55	10	4	29	1.54
15821535--15821623	41	2.2	41	83	4	108	51	12	5	30	1.62
15821546--15821622	21	3.7	22	72	11	56	51	10	5	32	1.58
15821574--15821702	52	2.5	53	84	2	170	55	8	4	31	1.50
15821521--15821691	93	1.8	94	83	1	227	53	11	5	29	1.59
15821717--15821769	20	2.4	24	84	12	69	54	13	7	24	1.64
15821732--15821813	40	2.0	41	83	2	103	52	10	6	30	1.61
15821732--15821795	20	3.2	20	93	0	101	51	9	7	31	1.62
15822799--15822911	56	2.1	55	93	3	192	44	4	9	41	1.57
15823478--15823538	29	2.1	29	87	0	86	54	4	26	14	1.61
15829680--15829706	14	1.9	14	100	0	54	22	0	0	77	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15829858--15829897	20	2.0	20	90	0	62	10	12	0	77	0.99
15830183--15830233	25	2.1	24	82	7	59	15	5	3	74	1.16
15834679--15834709	11	2.8	11	90	0	53	0	22	9	67	1.19
15835049--15835083	16	2.1	17	94	5	63	25	11	17	45	1.81
15835431--15835499	34	2.0	34	88	5	104	28	18	15	36	1.92
15841050--15841122	32	2.3	32	95	4	132	32	8	17	41	1.79
15849151--15849621	71	6.6	71	74	9	309	43	6	9	39	1.64
15849151--15849491	72	4.8	71	76	10	304	43	6	9	39	1.63
15852347--15852372	2	13.0	2	100	0	52	50	0	0	50	1.00
15860675--15860717	21	2.0	21	95	0	77	34	23	11	30	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147